Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:13:52 (1806375): wrapper (7.7.26015): starting
00:13:52 (1806375): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:13:52] Arguments: --nthreads 8
[2025-11-26 00:13:52] Threads: 8
[2025-11-26 00:13:52] Checking for CVMFS
[2025-11-26 00:13:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:13:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:13:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:13:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:13:54] 2.13.3.0 13122 29617 357436 153310 3 173 29342968 32935936 44226 16776704 0 147542317 99.573 163018703 36137 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:13:54] CVMFS is ok
[2025-11-26 00:13:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:13:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:13:55] Further information can be found at the LHC@home message board.
[2025-11-26 00:13:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:13:55] Checking for apptainer binary...
[2025-11-26 00:13:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:13:55] Running /usr/bin/apptainer --version
[2025-11-26 00:13:55] apptainer version 1.4.4-1.el9
[2025-11-26 00:13:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:13:55] c6-8-25-2.aglt2.org
[2025-11-26 00:13:55] apptainer works
[2025-11-26 00:13:55] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:13:55] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:13:55] Starting ATLAS job with PandaID=6896714627
[2025-11-26 00:13:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:44:02]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:44:02] 2025-11-26 21:43:11,541 | INFO     | monitor loop #2999: job 0:6896714627 is in state 'finished'
[2025-11-26 16:44:02] 2025-11-26 21:43:11,542 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:44:02] 2025-11-26 21:43:13,092 | INFO     | time since job start (59291s) is within the limit (172800.0s)
[2025-11-26 16:44:02] 2025-11-26 21:43:14,046 | INFO     | monitor loop #3000: job 0:6896714627 is in state 'finished'
[2025-11-26 16:44:02] 2025-11-26 21:43:14,047 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:44:02] 2025-11-26 21:43:15,657 | INFO     | PID=1813561 has CPU usage=11.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 16:44:02] 2025-11-26 21:43:15,657 | INFO     | .. there are 60 such processes running
[2025-11-26 16:44:02] 2025-11-26 21:43:16,563 | INFO     | monitor loop #3001: job 0:6896714627 is in state 'finished'
[2025-11-26 16:44:02] 2025-11-26 21:43:16,564 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:44:02] 2025-11-26 21:43:16,669 | INFO     | time since job start (59294s) is within the limit (172800.0s)
[2025-11-26 16:44:02] 2025-11-26 21:43:18,676 | INFO     | time since job start (59296s) is within the limit (172800.0s)
[2025-11-26 16:44:02] 2025-11-26 21:43:19,069 | INFO     | monitor loop #3002: job 0:6896714627 is in state 'finished'
[2025-11-26 16:44:02] 2025-11-26 21:43:19,070 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:44:02] 2025-11-26 21:43:20,683 | INFO     | time since job start (59298s) is within the limit (172800.0s)
[2025-11-26 16:44:02] 2025-11-26 21:43:21,579 | INFO     | monitor loop #3003: job 0:6896714627 is in state 'finished'
[2025-11-26 16:44:02] 2025-11-26 21:43:21,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:44:02] 2025-11-26 21:43:22,690 | INFO     | time since job start (59300s) is within the limit (172800.0s)
[2025-11-26 16:44:02] 2025-11-26 21:43:23,925 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 16:44:02] 2025-11-26 21:43:23,963 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2611.465604166667
[2025-11-26 16:44:02] 2025-11-26 21:43:23,980 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6896714627/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:44:02] 2025-11-26 21:43:23,980 | INFO     | extracted standard info from prmon json
[2025-11-26 16:44:02] 2025-11-26 21:43:23,981 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:44:02] 2025-11-26 21:43:23,981 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:44:02] 2025-11-26 21:43:24,000 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:44:02] 2025-11-26 21:43:24,001 | INFO     | sum of square deviations: 282994751183.55133
[2025-11-26 16:44:02] 2025-11-26 21:43:24,020 | INFO     | sum of deviations: 2150209972934.3762
[2025-11-26 16:44:02] 2025-11-26 21:43:24,021 | INFO     | mean x: 1764163804.0876288
[2025-11-26 16:44:02] 2025-11-26 21:43:24,021 | INFO     | mean y: 2825256.889690722
[2025-11-26 16:44:02] 2025-11-26 21:43:24,021 | INFO     | intersect: -13401390155.496899
[2025-11-26 16:44:02] 2025-11-26 21:43:24,022 | INFO     | chi2: 18.685443335368962
[2025-11-26 16:44:02] 2025-11-26 21:43:24,023 | INFO     | sum of square deviations: 278641381098.3834
[2025-11-26 16:44:02] 2025-11-26 21:43:24,042 | INFO     | sum of deviations: 2474825893779.643
[2025-11-26 16:44:02] 2025-11-26 21:43:24,042 | INFO     | mean x: 1764163651.595855
[2025-11-26 16:44:02] 2025-11-26 21:43:24,042 | INFO     | mean y: 2836623.5119170984
[2025-11-26 16:44:02] 2025-11-26 21:43:24,042 | INFO     | intersect: -15666041662.347256
[2025-11-26 16:44:02] 2025-11-26 21:43:24,043 | INFO     | chi2: 15.40868242959799
[2025-11-26 16:44:02] 2025-11-26 21:43:24,044 | INFO     | current chi2=15.40868242959799 (change=17.53643650278566 %)
[2025-11-26 16:44:02] 2025-11-26 21:43:24,044 | INFO     | right removable region: 964
[2025-11-26 16:44:02] 2025-11-26 21:43:24,045 | INFO     | sum of square deviations: 278640441698.3834
[2025-11-26 16:44:02] 2025-11-26 21:43:24,063 | INFO     | sum of deviations: 1759219215583.9683
[2025-11-26 16:44:02] 2025-11-26 21:43:24,064 | INFO     | mean x: 1764163956.595855
[2025-11-26 16:44:02] 2025-11-26 21:43:24,064 | INFO     | mean y: 2838949.1409326424
[2025-11-26 16:44:02] 2025-11-26 21:43:24,064 | INFO     | intersect: -11135354462.29334
[2025-11-26 16:44:02] 2025-11-26 21:43:24,065 | INFO     | chi2: 14.195558932459535
[2025-11-26 16:44:02] 2025-11-26 21:43:24,065 | INFO     | current chi2=14.195558932459535 (change=24.02878177586879 %)
[2025-11-26 16:44:02] 2025-11-26 21:43:24,065 | INFO     | left removable region: 10
[2025-11-26 16:44:02] 2025-11-26 21:43:24,067 | INFO     | sum of square deviations: 269219754322.54593
[2025-11-26 16:44:02] 2025-11-26 21:43:24,085 | INFO     | sum of deviations: 1797953148249.608
[2025-11-26 16:44:02] 2025-11-26 21:43:24,085 | INFO     | mean x: 1764163926.1142557
[2025-11-26 16:44:02] 2025-11-26 21:43:24,085 | INFO     | mean y: 2864983.278825996
[2025-11-26 16:44:02] 2025-11-26 21:43:24,086 | INFO     | intersect: -11778900782.636532
[2025-11-26 16:44:02] 2025-11-26 21:43:24,087 | INFO     | chi2: 6.895466170754791
[2025-11-26 16:44:02] 2025-11-26 21:43:24,087 | INFO     | current memory leak: 6.68 B/s (using 954 data points, chi2=6.90)
[2025-11-26 16:44:02] 2025-11-26 21:43:24,088 | INFO     | could have reported an average CPU frequency of 2678 MHz (36 samples)
[2025-11-26 16:44:02] 2025-11-26 21:43:24,088 | INFO     | ..............................
[2025-11-26 16:44:02] 2025-11-26 21:43:24,088 | INFO     | . Timing measurements:
[2025-11-26 16:44:02] 2025-11-26 21:43:24,088 | INFO     | . get job = 0 s
[2025-11-26 16:44:02] 2025-11-26 21:43:24,088 | INFO     | . initial setup = 6 s
[2025-11-26 16:44:02] 2025-11-26 21:43:24,089 | INFO     | . payload setup = 48 s
[2025-11-26 16:44:02] 2025-11-26 21:43:24,089 | INFO     | . stage-in = 0 s
[2025-11-26 16:44:02] 2025-11-26 21:43:24,089 | INFO     | . payload execution = 59146 s
[2025-11-26 16:44:02] 2025-11-26 21:43:24,089 | INFO     | . stage-out = 8 s
[2025-11-26 16:44:02] 2025-11-26 21:43:24,089 | INFO     | . log creation = 2 s
[2025-11-26 16:44:02] 2025-11-26 21:43:24,089 | INFO     | ..............................
[2025-11-26 16:44:02] 2025-11-26 21:43:24,267 | INFO     | 
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | job summary report
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | --------------------------------------------------
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | PanDA job id: 6896714627
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | task id: 47556161
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | errors: (none)
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | pilot state: finished 
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | transexitcode: 0
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | exeerrorcode: 0
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | exeerrordiag: 
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | exitcode: 0
[2025-11-26 16:44:02] 2025-11-26 21:43:24,268 | INFO     | exitmsg: OK
[2025-11-26 16:44:02] 2025-11-26 21:43:24,269 | INFO     | cpuconsumptiontime: 258892 s
[2025-11-26 16:44:02] 2025-11-26 21:43:24,269 | INFO     | nevents: 1000
[2025-11-26 16:44:02] 2025-11-26 21:43:24,269 | INFO     | neventsw: 0
[2025-11-26 16:44:02] 2025-11-26 21:43:24,269 | INFO     | pid: 1825940
[2025-11-26 16:44:02] 2025-11-26 21:43:24,269 | INFO     | pgrp: 1825940
[2025-11-26 16:44:02] 2025-11-26 21:43:24,269 | INFO     | corecount: 8
[2025-11-26 16:44:02] 2025-11-26 21:43:24,269 | INFO     | event service: False
[2025-11-26 16:44:02] 2025-11-26 21:43:24,269 | INFO     | sizes: {0: 2284093, 2: 2284292, 3: 2284292, 14: 2284320, 24: 2284348, 33: 2284638, 35: 2284822, 59198: 2336207, 59199: 2336206, 59209: 2345258, 59210: 2345314, 592
[2025-11-26 16:44:02] 2025-11-26 21:43:24,269 | INFO     | --------------------------------------------------
[2025-11-26 16:44:02] 2025-11-26 21:43:24,269 | INFO     | 
[2025-11-26 16:44:02] 2025-11-26 21:43:24,269 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-26 16:44:02] 2025-11-26 21:43:24,365 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,365 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,365 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,365 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,365 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,365 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,365 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,365 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,366 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:44:02] 2025-11-26 21:43:24,367 | INFO     | job 6896714627 has completed (purged errors)
[2025-11-26 16:44:02] 2025-11-26 21:43:24,367 | INFO     | overall cleanup function is called
[2025-11-26 16:44:02] 2025-11-26 21:43:25,388 | INFO     | --- collectZombieJob: --- 10, [1825940]
[2025-11-26 16:44:02] 2025-11-26 21:43:25,389 | INFO     | zombie collector waiting for pid 1825940
[2025-11-26 16:44:02] 2025-11-26 21:43:25,389 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:44:02] 2025-11-26 21:43:25,389 | INFO     | collected zombie processes
[2025-11-26 16:44:02] 2025-11-26 21:43:25,389 | INFO     | will attempt to kill all subprocesses of pid=1825940
[2025-11-26 16:44:02] 2025-11-26 21:43:26,602 | INFO     | process IDs to be killed: [1825940] (in reverse order)
[2025-11-26 16:44:02] 2025-11-26 21:43:26,988 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:44:02] 2025-11-26 21:43:26,988 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:44:02] 2025-11-26 21:43:27,121 | INFO     | did not find any defunct processes belonging to 1825940
[2025-11-26 16:44:02] 2025-11-26 21:43:27,250 | INFO     | did not find any defunct processes belonging to 1825940
[2025-11-26 16:44:02] 2025-11-26 21:43:27,252 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:44:02] 2025-11-26 21:43:27,255 | INFO     | ready for new job
[2025-11-26 16:44:02] 2025-11-26 21:43:27,256 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:44:02] 2025-11-26 21:43:27,262 | INFO     | ***************************************
[2025-11-26 16:44:02] 2025-11-26 21:43:27,262 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:44:02] 2025-11-26 21:43:27,263 | INFO     | ***************************************
[2025-11-26 16:44:02] 2025-11-26 21:43:27,263 | INFO     | 
[2025-11-26 16:44:02] 2025-11-26 21:43:27,269 | INFO     | architecture information:
[2025-11-26 16:44:02] 2025-11-26 21:43:27,270 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:44:02] 2025-11-26 21:43:27,323 | INFO     | cat /etc/os-release:
[2025-11-26 16:44:02] NAME="CentOS Linux"
[2025-11-26 16:44:02] VERSION="7 (Core)"
[2025-11-26 16:44:02] ID="centos"
[2025-11-26 16:44:02] ID_LIKE="rhel fedora"
[2025-11-26 16:44:02] VERSION_ID="7"
[2025-11-26 16:44:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:44:02] ANSI_COLOR="0;31"
[2025-11-26 16:44:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:44:02] HOME_URL="https://www.centos.org/"
[2025-11-26 16:44:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:44:02] 
[2025-11-26 16:44:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:44:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:44:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:44:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:44:02] 
[2025-11-26 16:44:02] 2025-11-26 21:43:27,323 | INFO     | ***************************************
[2025-11-26 16:44:02] 2025-11-26 21:43:27,827 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-26 16:44:02] 2025-11-26 21:43:27,874 | INFO     | sufficient remaining disk space (67144515584 B)
[2025-11-26 16:44:02] 2025-11-26 21:43:27,874 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:44:02] 2025-11-26 21:43:27,874 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:44:02] 2025-11-26 21:43:27,874 | INFO     | update_server=False
[2025-11-26 16:44:02] 2025-11-26 21:43:27,875 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:44:02] 2025-11-26 21:43:27,875 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:44:02] 2025-11-26 21:43:27,875 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:44:02] 2025-11-26 21:43:27,875 | INFO     | aborting loop
[2025-11-26 16:44:02] 2025-11-26 21:43:28,159 | INFO     | all data control threads have been joined
[2025-11-26 16:44:02] 2025-11-26 21:43:28,760 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:44:02] 2025-11-26 21:43:28,868 | INFO     | all payload control threads have been joined
[2025-11-26 16:44:02] 2025-11-26 21:43:28,880 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:28,880 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:28,996 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:29,081 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:29,162 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:29,165 | INFO     | [data] control thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:29,171 | INFO     | all job control threads have been joined
[2025-11-26 16:44:02] 2025-11-26 21:43:29,293 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:44:02] 2025-11-26 21:43:29,874 | INFO     | [payload] control thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:30,185 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:30,188 | INFO     | [job] control thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:30,207 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:30,236 | INFO     | [job] validate thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:30,237 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:30,304 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:30,305 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:30,768 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:31,883 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:44:02] 2025-11-26 21:43:53,690 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:44:02] 2025-11-26 21:43:55,436 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140591294498624)>', '<ExcThread(monitor, started 140590939346688)>']
[2025-11-26 16:44:02] 2025-11-26 21:43:56,878 | INFO     | PID=1813561 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:44:02] 2025-11-26 21:43:56,879 | INFO     | .. there are 60 such processes running
[2025-11-26 16:44:02] 2025-11-26 21:43:56,885 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:44:02] 2025-11-26 21:43:56,886 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:44:02] 2025-11-26 21:43:56,886 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:44:02] 2025-11-26 21:43:56,886 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:44:02] 2025-11-26 21:43:56,886 | INFO     | [monitor] control thread has ended
[2025-11-26 16:44:02] 2025-11-26 21:44:00,481 | INFO     | all workflow threads have been joined
[2025-11-26 16:44:02] 2025-11-26 21:44:00,481 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:44:02] 2025-11-26 21:44:00,481 | INFO     | traces error code: 0
[2025-11-26 16:44:02] 2025-11-26 21:44:00,481 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:44:02] 2025-11-26 21:44:01,693 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:44:02] 2025-11-26 21:44:01,712 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:44:02] 2025-11-26 21:44:01,727 [wrapper] pilotpid: 1813561
[2025-11-26 16:44:02] 2025-11-26 21:44:01,736 [wrapper] Pilot exit status: 0
[2025-11-26 16:44:02] 2025-11-26 21:44:01,811 [wrapper] pandaids: 6896714627
[2025-11-26 16:44:02] 2025-11-26 21:44:02,104 [wrapper] cleanup supervisor_pilot 2904848 1813562
[2025-11-26 16:44:02] 2025-11-26 21:44:02,128 [wrapper] Test setup, not cleaning
[2025-11-26 16:44:02] 2025-11-26 21:44:02,151 [wrapper] apfmon messages muted
[2025-11-26 16:44:02] 2025-11-26 21:44:02,190 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:44:02] 2025-11-26 21:44:02,210 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:44:02]  *** Error codes and diagnostics ***
[2025-11-26 16:44:02]     "exeErrorCode": 0,
[2025-11-26 16:44:02]     "exeErrorDiag": "",
[2025-11-26 16:44:02]     "pilotErrorCode": 0,
[2025-11-26 16:44:02]     "pilotErrorDiag": "",
[2025-11-26 16:44:02]  *** Listing of results directory ***
[2025-11-26 16:44:02] total 1317172
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:41 queuedata.json
[2025-11-26 16:44:02] -rwx------. 1 boincer umatlas     36292 Nov 25 01:44 runpilot2-wrapper.sh
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:44:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:13 run_atlas
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:13 job.xml
[2025-11-26 16:44:02] -rw-r--r--. 2 boincer umatlas 411664993 Nov 26 00:13 EVNT.47483658._002125.pool.root.1
[2025-11-26 16:44:02] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:13 input.tar.gz
[2025-11-26 16:44:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:13 start_atlas.sh
[2025-11-26 16:44:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:13 shared
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:13 boinc_lockfile
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:13 pandaJob.out
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas        57 Nov 26 00:13 setup.sh.local
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas    991877 Nov 26 00:14 agis_schedconf.cvmfs.json
[2025-11-26 16:44:02] drwx------. 5 boincer umatlas      4096 Nov 26 00:15 pilot3
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas       533 Nov 26 16:23 boinc_task_state.xml
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas      6880 Nov 26 16:41 init_data.xml
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas 915513637 Nov 26 16:41 HITS.47556161._001090.pool.root.1
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas      1059 Nov 26 16:42 memory_monitor_summary.json
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas   1516240 Nov 26 16:42 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas   2072090 Nov 26 16:42 log.47556161._001090.job.log.tgz.1
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas      8620 Nov 26 16:43 heartbeat.json
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas        95 Nov 26 16:43 pilot_heartbeat.json
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas        29 Nov 26 16:43 wrapper_checkpoint.txt
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 16:43 boinc_mmap_file
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas      4825 Nov 26 16:44 pilotlog.txt
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas   6767282 Nov 26 16:44 log.47556161._001090.job.log.1
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas       353 Nov 26 16:44 output.list
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas       620 Nov 26 16:44 runtime_log
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas   8857600 Nov 26 16:44 result.tar.gz
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas      9366 Nov 26 16:44 runtime_log.err
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas       661 Nov 26 16:44 igxKDmex1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmXDMKDmgBdzCo.diag
[2025-11-26 16:44:02] -rw-r--r--. 1 boincer umatlas     21900 Nov 26 16:44 stderr.txt
[2025-11-26 16:44:02] HITS file was successfully produced:
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas 915513637 Nov 26 16:41 shared/HITS.pool.root.1
[2025-11-26 16:44:02]  *** Contents of shared directory: ***
[2025-11-26 16:44:02] total 1305336
[2025-11-26 16:44:02] -rw-r--r--. 2 boincer umatlas 411664993 Nov 26 00:13 ATLAS.root_0
[2025-11-26 16:44:02] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:13 input.tar.gz
[2025-11-26 16:44:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:13 start_atlas.sh
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas 915513637 Nov 26 16:41 HITS.pool.root.1
[2025-11-26 16:44:02] -rw-------. 1 boincer umatlas   8857600 Nov 26 16:44 result.tar.gz
16:44:04 (1806375): run_atlas exited; CPU time 261524.745122
16:44:04 (1806375): called boinc_finish(0)

</stderr_txt>
]]>

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