Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:48:44 (153036): wrapper (7.7.26015): starting
14:48:44 (153036): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 14:48:44] Arguments: --nthreads 10
[2025-11-26 14:48:44] Threads: 10
[2025-11-26 14:48:44] Checking for CVMFS
[2025-11-26 14:48:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 14:48:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 14:48:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 14:48:47] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 14:48:47] 2.13.3.0 12257 30441 416404 153333 3 804 31656555 32935937 50933 16776704 0 290101418 99.785 154718790 29482 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 14:48:47] CVMFS is ok
[2025-11-26 14:48:47] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 14:48:47] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 14:48:47] Further information can be found at the LHC@home message board.
[2025-11-26 14:48:47] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 14:48:47] Checking for apptainer binary...
[2025-11-26 14:48:47] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 14:48:47] Running /usr/bin/apptainer --version
[2025-11-26 14:48:47] apptainer version 1.4.4-1.el9
[2025-11-26 14:48:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 14:48:48] c-1-3.aglt2.org
[2025-11-26 14:48:48] apptainer works
[2025-11-26 14:48:48] Set ATHENA_PROC_NUMBER=10
[2025-11-26 14:48:48] Set ATHENA_CORE_NUMBER=10
[2025-11-26 14:48:48] Starting ATLAS job with PandaID=6891106413
[2025-11-26 14:48:48] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
16:27:26 (950215): wrapper (7.7.26015): starting
16:27:26 (950215): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 16:27:26] Arguments: --nthreads 10
[2025-11-26 16:27:26] Threads: 10
[2025-11-26 16:27:26] This job has been restarted, cleaning up previous attempt
[2025-11-26 16:27:26] Checking for CVMFS
[2025-11-26 16:27:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 16:27:26] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 16:27:26] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 16:27:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 16:27:27] 2.13.3.0 12257 30540 397544 153335 1 543 20772440 32935936 48019 16776704 0 292059844 99.784 156717556 29487 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 16:27:27] CVMFS is ok
[2025-11-26 16:27:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 16:27:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 16:27:27] Further information can be found at the LHC@home message board.
[2025-11-26 16:27:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 16:27:27] Checking for apptainer binary...
[2025-11-26 16:27:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 16:27:27] Running /usr/bin/apptainer --version
[2025-11-26 16:27:27] apptainer version 1.4.4-1.el9
[2025-11-26 16:27:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 16:27:27] c-1-3.aglt2.org
[2025-11-26 16:27:27] apptainer works
[2025-11-26 16:27:27] Set ATHENA_PROC_NUMBER=10
[2025-11-26 16:27:27] Set ATHENA_CORE_NUMBER=10
[2025-11-26 16:27:27] Starting ATLAS job with PandaID=6891106413
[2025-11-26 16:27:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:02:05]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:02:05] 2025-11-27 19:56:36,853 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:02:05] 2025-11-27 19:56:38,534 | INFO     | time since job start (80938s) is within the limit (172800.0s)
[2025-11-27 15:02:05] 2025-11-27 19:56:39,360 | INFO     | monitor loop #3879: job 0:6891106413 is in state 'finished'
[2025-11-27 15:02:05] 2025-11-27 19:56:39,360 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:02:05] 2025-11-27 19:56:40,540 | INFO     | time since job start (80940s) is within the limit (172800.0s)
[2025-11-27 15:02:05] 2025-11-27 19:56:41,864 | INFO     | monitor loop #3880: job 0:6891106413 is in state 'finished'
[2025-11-27 15:02:05] 2025-11-27 19:56:41,864 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:02:05] 2025-11-27 19:56:42,546 | INFO     | time since job start (80942s) is within the limit (172800.0s)
[2025-11-27 15:02:05] 2025-11-27 19:56:44,384 | INFO     | monitor loop #3881: job 0:6891106413 is in state 'finished'
[2025-11-27 15:02:05] 2025-11-27 19:56:44,384 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:02:05] 2025-11-27 19:56:44,662 | INFO     | PID=971259 has CPU usage=15.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:02:05] 2025-11-27 19:56:44,662 | INFO     | .. there are 75 such processes running
[2025-11-27 15:02:05] 2025-11-27 19:56:45,663 | INFO     | time since job start (80945s) is within the limit (172800.0s)
[2025-11-27 15:02:05] 2025-11-27 19:56:46,890 | INFO     | monitor loop #3882: job 0:6891106413 is in state 'finished'
[2025-11-27 15:02:05] 2025-11-27 19:56:46,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:02:05] 2025-11-27 19:56:47,130 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 15:02:05] 2025-11-27 19:56:47,136 | INFO     | found 40 cores (20 cores per socket, 2 sockets) HT, CPU MHz: 2761.522900000001
[2025-11-27 15:02:05] 2025-11-27 19:56:47,150 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891106413/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:02:05] 2025-11-27 19:56:47,163 | INFO     | extracted standard info from prmon json
[2025-11-27 15:02:05] 2025-11-27 19:56:47,163 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:02:05] 2025-11-27 19:56:47,163 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:02:05] 2025-11-27 19:56:47,200 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:02:05] 2025-11-27 19:56:47,202 | INFO     | sum of square deviations: 723005701793.9357
[2025-11-27 15:02:05] 2025-11-27 19:56:47,235 | INFO     | sum of deviations: 3108002581934.64
[2025-11-27 15:02:05] 2025-11-27 19:56:47,235 | INFO     | mean x: 1764232909.1199095
[2025-11-27 15:02:05] 2025-11-27 19:56:47,236 | INFO     | mean y: 3241250.354449472
[2025-11-27 15:02:05] 2025-11-27 19:56:47,237 | INFO     | intersect: -7580710609.324691
[2025-11-27 15:02:05] 2025-11-27 19:56:47,238 | INFO     | chi2: 18.161600752817108
[2025-11-27 15:02:05] 2025-11-27 19:56:47,240 | INFO     | sum of square deviations: 714859623787.1991
[2025-11-27 15:02:05] 2025-11-27 19:56:47,296 | INFO     | sum of deviations: 3587071313218.5664
[2025-11-27 15:02:05] 2025-11-27 19:56:47,296 | INFO     | mean x: 1764232756.632097
[2025-11-27 15:02:05] 2025-11-27 19:56:47,297 | INFO     | mean y: 3250217.925056775
[2025-11-27 15:02:05] 2025-11-27 19:56:47,297 | INFO     | intersect: -8849437079.797283
[2025-11-27 15:02:05] 2025-11-27 19:56:47,307 | INFO     | chi2: 15.069838578423257
[2025-11-27 15:02:05] 2025-11-27 19:56:47,307 | INFO     | current chi2=15.069838578423257 (change=17.023621521435974 %)
[2025-11-27 15:02:05] 2025-11-27 19:56:47,308 | INFO     | right removable region: 1320
[2025-11-27 15:02:05] 2025-11-27 19:56:47,309 | INFO     | sum of square deviations: 714857018479.1982
[2025-11-27 15:02:05] 2025-11-27 19:56:47,354 | INFO     | sum of deviations: 2719019190188.1655
[2025-11-27 15:02:05] 2025-11-27 19:56:47,355 | INFO     | mean x: 1764233061.632097
[2025-11-27 15:02:05] 2025-11-27 19:56:47,355 | INFO     | mean y: 3248522.9962149886
[2025-11-27 15:02:05] 2025-11-27 19:56:47,355 | INFO     | intersect: -6707161288.3913765
[2025-11-27 15:02:05] 2025-11-27 19:56:47,356 | INFO     | chi2: 16.1418975557388
[2025-11-27 15:02:05] 2025-11-27 19:56:47,356 | INFO     | current chi2=16.1418975557388 (change=11.120733378994824 %)
[2025-11-27 15:02:05] 2025-11-27 19:56:47,356 | INFO     | left removable region: 10
[2025-11-27 15:02:05] 2025-11-27 19:56:47,358 | INFO     | sum of square deviations: 697149266429.6062
[2025-11-27 15:02:05] 2025-11-27 19:56:47,392 | INFO     | sum of deviations: 3143805676320.914
[2025-11-27 15:02:05] 2025-11-27 19:56:47,392 | INFO     | mean x: 1764233031.1572518
[2025-11-27 15:02:05] 2025-11-27 19:56:47,392 | INFO     | mean y: 3262207.5877862596
[2025-11-27 15:02:05] 2025-11-27 19:56:47,392 | INFO     | intersect: -7952574633.653531
[2025-11-27 15:02:05] 2025-11-27 19:56:47,404 | INFO     | chi2: 12.289369396189999
[2025-11-27 15:02:05] 2025-11-27 19:56:47,404 | INFO     | current memory leak: 4.51 B/s (using 1310 data points, chi2=12.29)
[2025-11-27 15:02:05] 2025-11-27 19:56:47,406 | INFO     | could have reported an average CPU frequency of 2769 MHz (47 samples)
[2025-11-27 15:02:05] 2025-11-27 19:56:47,406 | INFO     | ..............................
[2025-11-27 15:02:05] 2025-11-27 19:56:47,406 | INFO     | . Timing measurements:
[2025-11-27 15:02:05] 2025-11-27 19:56:47,406 | INFO     | . get job = 0 s
[2025-11-27 15:02:05] 2025-11-27 19:56:47,407 | INFO     | . initial setup = 1 s
[2025-11-27 15:02:05] 2025-11-27 19:56:47,407 | INFO     | . payload setup = 8 s
[2025-11-27 15:02:05] 2025-11-27 19:56:47,407 | INFO     | . stage-in = 0 s
[2025-11-27 15:02:05] 2025-11-27 19:56:47,407 | INFO     | . payload execution = 80893 s
[2025-11-27 15:02:05] 2025-11-27 19:56:47,407 | INFO     | . stage-out = 4 s
[2025-11-27 15:02:05] 2025-11-27 19:56:47,407 | INFO     | . log creation = 1 s
[2025-11-27 15:02:05] 2025-11-27 19:56:47,407 | INFO     | ..............................
[2025-11-27 15:02:05] 2025-11-27 19:56:47,669 | INFO     | time since job start (80947s) is within the limit (172800.0s)
[2025-11-27 15:02:05] 2025-11-27 19:56:47,958 | INFO     | 
[2025-11-27 15:02:05] 2025-11-27 19:56:47,958 | INFO     | job summary report
[2025-11-27 15:02:05] 2025-11-27 19:56:47,958 | INFO     | --------------------------------------------------
[2025-11-27 15:02:05] 2025-11-27 19:56:47,958 | INFO     | PanDA job id: 6891106413
[2025-11-27 15:02:05] 2025-11-27 19:56:47,958 | INFO     | task id: 47483661
[2025-11-27 15:02:05] 2025-11-27 19:56:47,958 | INFO     | errors: (none)
[2025-11-27 15:02:05] 2025-11-27 19:56:47,958 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:02:05] 2025-11-27 19:56:47,958 | INFO     | pilot state: finished 
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | transexitcode: 0
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | exeerrorcode: 0
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | exeerrordiag: 
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | exitcode: 0
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | exitmsg: OK
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | cpuconsumptiontime: 267846 s
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | nevents: 1000
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | neventsw: 0
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | pid: 1004521
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | pgrp: 1004521
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | corecount: 10
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | event service: False
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | sizes: {0: 2284304, 1: 2284304, 7: 2284594, 11: 2284622, 80904: 2345496, 80905: 2345495, 80909: 2354673, 80911: 2354729, 80930: 2354975}
[2025-11-27 15:02:05] 2025-11-27 19:56:47,959 | INFO     | --------------------------------------------------
[2025-11-27 15:02:05] 2025-11-27 19:56:47,960 | INFO     | 
[2025-11-27 15:02:05] 2025-11-27 19:56:47,960 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 15:02:05] 2025-11-27 19:56:48,076 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,077 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,077 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,077 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,077 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,077 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,077 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,077 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,077 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,077 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,077 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,077 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,078 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,078 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,078 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,078 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,078 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,078 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:02:05] 2025-11-27 19:56:48,078 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,078 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:02:05] 2025-11-27 19:56:48,078 | INFO     | job 6891106413 has completed (purged errors)
[2025-11-27 15:02:05] 2025-11-27 19:56:48,078 | INFO     | overall cleanup function is called
[2025-11-27 15:02:05] 2025-11-27 19:56:49,109 | INFO     | --- collectZombieJob: --- 10, [1004521]
[2025-11-27 15:02:05] 2025-11-27 19:56:49,110 | INFO     | zombie collector waiting for pid 1004521
[2025-11-27 15:02:05] 2025-11-27 19:56:49,110 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:02:05] 2025-11-27 19:56:49,110 | INFO     | collected zombie processes
[2025-11-27 15:02:05] 2025-11-27 19:56:49,110 | INFO     | will attempt to kill all subprocesses of pid=1004521
[2025-11-27 15:02:05] 2025-11-27 19:56:50,188 | INFO     | process IDs to be killed: [1004521] (in reverse order)
[2025-11-27 15:02:05] 2025-11-27 19:56:50,449 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:02:05] 2025-11-27 19:56:50,450 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:02:05] 2025-11-27 19:56:50,508 | INFO     | did not find any defunct processes belonging to 1004521
[2025-11-27 15:02:05] 2025-11-27 19:56:50,539 | INFO     | did not find any defunct processes belonging to 1004521
[2025-11-27 15:02:05] 2025-11-27 19:56:50,548 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:02:05] 2025-11-27 19:56:50,548 | INFO     | ready for new job
[2025-11-27 15:02:05] 2025-11-27 19:56:50,549 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:02:05] 2025-11-27 19:56:50,554 | INFO     | ***************************************
[2025-11-27 15:02:05] 2025-11-27 19:56:50,555 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:02:05] 2025-11-27 19:56:50,555 | INFO     | ***************************************
[2025-11-27 15:02:05] 2025-11-27 19:56:50,555 | INFO     | 
[2025-11-27 15:02:05] 2025-11-27 19:56:50,561 | INFO     | architecture information:
[2025-11-27 15:02:05] 2025-11-27 19:56:50,564 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:02:05] 2025-11-27 19:56:50,640 | INFO     | cat /etc/os-release:
[2025-11-27 15:02:05] NAME="CentOS Linux"
[2025-11-27 15:02:05] VERSION="7 (Core)"
[2025-11-27 15:02:05] ID="centos"
[2025-11-27 15:02:05] ID_LIKE="rhel fedora"
[2025-11-27 15:02:05] VERSION_ID="7"
[2025-11-27 15:02:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:02:05] ANSI_COLOR="0;31"
[2025-11-27 15:02:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:02:05] HOME_URL="https://www.centos.org/"
[2025-11-27 15:02:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:02:05] 
[2025-11-27 15:02:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:02:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:02:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:02:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:02:05] 
[2025-11-27 15:02:05] 2025-11-27 19:56:50,640 | INFO     | ***************************************
[2025-11-27 15:02:05] 2025-11-27 19:56:51,144 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 15:02:05] 2025-11-27 19:56:51,198 | INFO     | sufficient remaining disk space (67329064960 B)
[2025-11-27 15:02:05] 2025-11-27 19:56:51,198 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:02:05] 2025-11-27 19:56:51,199 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:02:05] 2025-11-27 19:56:51,199 | INFO     | update_server=False
[2025-11-27 15:02:05] 2025-11-27 19:56:51,199 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:02:05] 2025-11-27 19:56:51,200 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:02:05] 2025-11-27 19:56:51,200 | INFO     | aborting loop
[2025-11-27 15:02:05] 2025-11-27 19:56:51,204 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:02:05] 2025-11-27 19:56:51,594 | INFO     | all job control threads have been joined
[2025-11-27 15:02:05] 2025-11-27 19:56:52,147 | INFO     | all data control threads have been joined
[2025-11-27 15:02:05] 2025-11-27 19:56:52,205 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:52,206 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:52,240 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:52,470 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:52,495 | INFO     | all payload control threads have been joined
[2025-11-27 15:02:05] 2025-11-27 19:56:52,534 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:52,558 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:02:05] 2025-11-27 19:56:52,600 | INFO     | [job] control thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:52,972 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:52,999 | INFO     | [job] validate thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:53,000 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:02:05] 2025-11-27 19:56:53,152 | INFO     | [data] control thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:53,214 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:53,357 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:53,472 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:53,501 | INFO     | [payload] control thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:53,565 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:56:57,009 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:57:01,620 | INFO     | job.realtimelogging is not enabled
[2025-11-27 15:02:05] 2025-11-27 19:57:02,632 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:02:05] 2025-11-27 19:57:16,021 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:02:05] 2025-11-27 19:57:18,047 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139672633829184)>', '<ExcThread(monitor, started 139671925417728)>']
[2025-11-27 15:02:05] 2025-11-27 19:57:21,977 | INFO     | PID=971259 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 15:02:05] 2025-11-27 19:57:21,978 | INFO     | .. there are 73 such processes running
[2025-11-27 15:02:05] 2025-11-27 19:57:21,979 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:02:05] 2025-11-27 19:57:21,979 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:02:05] 2025-11-27 19:57:21,979 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:02:05] 2025-11-27 19:57:21,980 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:02:05] 2025-11-27 19:57:21,980 | INFO     | [monitor] control thread has ended
[2025-11-27 15:02:05] 2025-11-27 19:57:23,073 | INFO     | all workflow threads have been joined
[2025-11-27 15:02:05] 2025-11-27 19:57:23,073 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:02:05] 2025-11-27 19:57:23,073 | INFO     | traces error code: 0
[2025-11-27 15:02:05] 2025-11-27 19:57:23,074 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:02:05] 2025-11-27 19:57:23,514 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:02:05] 2025-11-27 19:57:23,539 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:02:05] 2025-11-27 19:57:23,554 [wrapper] pilotpid: 971259
[2025-11-27 15:02:05] 2025-11-27 19:57:23,573 [wrapper] Pilot exit status: 0
[2025-11-27 15:02:05] 2025-11-27 19:57:23,648 [wrapper] pandaids: 6891106413 6891106413
[2025-11-27 15:02:05] 2025-11-27 19:57:24,140 [wrapper] cleanup supervisor_pilot  724480 971260
[2025-11-27 15:02:05] 2025-11-27 19:57:24,166 [wrapper] Test setup, not cleaning
[2025-11-27 15:02:05] 2025-11-27 19:57:24,177 [wrapper] apfmon messages muted
[2025-11-27 15:02:05] 2025-11-27 19:57:24,182 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:02:05] 2025-11-27 19:57:24,195 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:02:05]  *** Error codes and diagnostics ***
[2025-11-27 15:02:05]     "exeErrorCode": 0,
[2025-11-27 15:02:05]     "exeErrorDiag": "",
[2025-11-27 15:02:05]     "pilotErrorCode": 0,
[2025-11-27 15:02:05]     "pilotErrorDiag": "",
[2025-11-27 15:02:05]  *** Listing of results directory ***
[2025-11-27 15:02:05] total 1726692
[2025-11-27 15:02:05] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 15:02:05] -rwx------. 1 boincer umatlas     36292 Nov 18 02:00 runpilot2-wrapper.sh
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas       100 Nov 26 14:48 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:02:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 14:48 run_atlas
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas       105 Nov 26 14:48 job.xml
[2025-11-27 15:02:05] -rw-r--r--. 3 boincer umatlas 409575943 Nov 26 14:48 EVNT.47483658._000261.pool.root.1
[2025-11-27 15:02:05] -rw-r--r--. 3 boincer umatlas 409575943 Nov 26 14:48 ATLAS.root_0
[2025-11-27 15:02:05] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 14:48 start_atlas.sh
[2025-11-27 15:02:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 14:48 shared
[2025-11-27 15:02:05] -rw-r--r--. 2 boincer umatlas    590096 Nov 26 14:48 input.tar.gz
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas         0 Nov 26 14:48 boinc_lockfile
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 16:27 pandaJob.out
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas    991538 Nov 26 16:27 agis_schedconf.cvmfs.json
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:15 boinc_task_state.xml
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas 922053545 Nov 27 14:55 HITS.47483661._002303.pool.root.1
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas      6840 Nov 27 14:56 init_data.xml
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas      1058 Nov 27 14:56 memory_monitor_summary.json
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:56 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas   2506833 Nov 27 14:56 log.47483661._002303.job.log.tgz.1
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas      8614 Nov 27 14:56 heartbeat.json
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas        96 Nov 27 14:57 pilot_heartbeat.json
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas      4895 Nov 27 14:57 pilotlog.txt
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas   8990525 Nov 27 14:57 log.47483661._002303.job.log.1
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas       353 Nov 27 14:57 output.list
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:57 runtime_log
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas  11520000 Nov 27 14:57 result.tar.gz
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas       782 Nov 27 14:57 WFHKDmQsUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmhQKODmnMxgFm.diag
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas      8776 Nov 27 14:57 runtime_log.err
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:02 boinc_mmap_file
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:02 wrapper_checkpoint.txt
[2025-11-27 15:02:05] -rw-r--r--. 1 boincer umatlas     24007 Nov 27 15:02 stderr.txt
[2025-11-27 15:02:05] HITS file was successfully produced:
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas 922053545 Nov 27 14:55 shared/HITS.pool.root.1
[2025-11-27 15:02:05]  *** Contents of shared directory: ***
[2025-11-27 15:02:05] total 1312280
[2025-11-27 15:02:05] -rw-r--r--. 3 boincer umatlas 409575943 Nov 26 14:48 ATLAS.root_0
[2025-11-27 15:02:05] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 14:48 start_atlas.sh
[2025-11-27 15:02:05] -rw-r--r--. 2 boincer umatlas    590096 Nov 26 14:48 input.tar.gz
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas 922053545 Nov 27 14:55 HITS.pool.root.1
[2025-11-27 15:02:05] -rw-------. 1 boincer umatlas  11520000 Nov 27 14:57 result.tar.gz
15:02:07 (950215): run_atlas exited; CPU time 271289.340739
15:02:07 (950215): called boinc_finish(0)

</stderr_txt>
]]>

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