Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:22 (537619): wrapper (7.7.26015): starting
00:03:22 (537619): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:22] Arguments: --nthreads 9
[2025-11-26 00:03:22] Threads: 9
[2025-11-26 00:03:22] Checking for CVMFS
[2025-11-26 00:03:23] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:24] 2.13.2.0 5678 32457 180260 153309 3 268 36571014 39288833 5825 16776704 0 24522789 99.752 15255254 34166 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:03:24] CVMFS is ok
[2025-11-26 00:03:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:24] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:24] Checking for apptainer binary...
[2025-11-26 00:03:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:24] Running /usr/bin/apptainer --version
[2025-11-26 00:03:24] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:25] c-210-21.aglt2.org
[2025-11-26 00:03:25] apptainer works
[2025-11-26 00:03:25] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:25] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:25] Starting ATLAS job with PandaID=6891106412
[2025-11-26 00:03:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:15:55]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:15:55] 2025-11-27 18:33:36,518 | INFO     | time since job start (134941s) is within the limit (172800.0s)
[2025-11-27 18:15:55] 2025-11-27 18:33:38,538 | INFO     | time since job start (134943s) is within the limit (172800.0s)
[2025-11-27 18:15:55] 2025-11-27 18:33:38,618 | INFO     | monitor loop #8033: job 0:6891106412 is in state 'finished'
[2025-11-27 18:15:55] 2025-11-27 18:33:38,618 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:15:55] 2025-11-27 18:33:40,545 | INFO     | time since job start (134945s) is within the limit (172800.0s)
[2025-11-27 18:15:55] 2025-11-27 18:33:41,158 | INFO     | monitor loop #8034: job 0:6891106412 is in state 'finished'
[2025-11-27 18:15:55] 2025-11-27 18:33:41,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:15:55] 2025-11-27 18:33:42,552 | INFO     | time since job start (134947s) is within the limit (172800.0s)
[2025-11-27 18:15:55] 2025-11-27 18:33:43,693 | INFO     | monitor loop #8035: job 0:6891106412 is in state 'finished'
[2025-11-27 18:15:55] 2025-11-27 18:33:43,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:15:55] 2025-11-27 18:33:45,585 | INFO     | PID=544963 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 18:15:55] 2025-11-27 18:33:45,585 | INFO     | .. there are 8 such processes running
[2025-11-27 18:15:55] 2025-11-27 18:33:46,340 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 18:15:55] 2025-11-27 18:33:46,431 | INFO     | monitor loop #8036: job 0:6891106412 is in state 'finished'
[2025-11-27 18:15:55] 2025-11-27 18:33:46,431 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:15:55] 2025-11-27 18:33:46,447 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2578.2661749999997
[2025-11-27 18:15:55] 2025-11-27 18:33:46,545 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891106412/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:15:55] 2025-11-27 18:33:46,546 | INFO     | extracted standard info from prmon json
[2025-11-27 18:15:55] 2025-11-27 18:33:46,546 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:15:55] 2025-11-27 18:33:46,546 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:15:55] 2025-11-27 18:33:46,726 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:15:55] 2025-11-27 18:33:46,734 | INFO     | sum of square deviations: 3346967989232.6934
[2025-11-27 18:15:55] 2025-11-27 18:33:46,740 | INFO     | time since job start (134951s) is within the limit (172800.0s)
[2025-11-27 18:15:55] 2025-11-27 18:33:47,000 | INFO     | sum of deviations: 16475718269299.447
[2025-11-27 18:15:55] 2025-11-27 18:33:47,001 | INFO     | mean x: 1764200977.2294118
[2025-11-27 18:15:55] 2025-11-27 18:33:47,001 | INFO     | mean y: 3077830.5751131224
[2025-11-27 18:15:55] 2025-11-27 18:33:47,001 | INFO     | intersect: -8681342924.198277
[2025-11-27 18:15:55] 2025-11-27 18:33:47,009 | INFO     | chi2: 29.6144291556043
[2025-11-27 18:15:55] 2025-11-27 18:33:47,017 | INFO     | sum of square deviations: 3324305365958.0894
[2025-11-27 18:15:55] 2025-11-27 18:33:47,265 | INFO     | sum of deviations: 17294834516242.996
[2025-11-27 18:15:55] 2025-11-27 18:33:47,265 | INFO     | mean x: 1764200824.7401361
[2025-11-27 18:15:55] 2025-11-27 18:33:47,265 | INFO     | mean y: 3083341.3210884356
[2025-11-27 18:15:55] 2025-11-27 18:33:47,265 | INFO     | intersect: -9175243544.574488
[2025-11-27 18:15:55] 2025-11-27 18:33:47,273 | INFO     | chi2: 26.166512360501944
[2025-11-27 18:15:55] 2025-11-27 18:33:47,273 | INFO     | current chi2=26.166512360501944 (change=11.642692070766671 %)
[2025-11-27 18:15:55] 2025-11-27 18:33:47,273 | INFO     | right removable region: 2204
[2025-11-27 18:15:55] 2025-11-27 18:33:47,280 | INFO     | sum of square deviations: 3324298990238.1045
[2025-11-27 18:15:55] 2025-11-27 18:33:47,579 | INFO     | sum of deviations: 15476794001113.71
[2025-11-27 18:15:55] 2025-11-27 18:33:47,580 | INFO     | mean x: 1764201129.7401361
[2025-11-27 18:15:55] 2025-11-27 18:33:47,580 | INFO     | mean y: 3084550.8040816328
[2025-11-27 18:15:55] 2025-11-27 18:33:47,580 | INFO     | intersect: -8210429799.649845
[2025-11-27 18:15:55] 2025-11-27 18:33:47,587 | INFO     | chi2: 24.955273073386493
[2025-11-27 18:15:55] 2025-11-27 18:33:47,588 | INFO     | current chi2=24.955273073386493 (change=15.732722916038705 %)
[2025-11-27 18:15:55] 2025-11-27 18:33:47,588 | INFO     | left removable region: 10
[2025-11-27 18:15:55] 2025-11-27 18:33:47,595 | INFO     | sum of square deviations: 3274795661187.727
[2025-11-27 18:15:55] 2025-11-27 18:33:48,221 | INFO     | sum of deviations: 15587159857299.365
[2025-11-27 18:15:55] 2025-11-27 18:33:48,221 | INFO     | mean x: 1764201099.2634459
[2025-11-27 18:15:55] 2025-11-27 18:33:48,226 | INFO     | mean y: 3096892.1221513217
[2025-11-27 18:15:55] 2025-11-27 18:33:48,226 | INFO     | intersect: -8394033005.341161
[2025-11-27 18:15:55] 2025-11-27 18:33:48,234 | INFO     | chi2: 17.639249644685812
[2025-11-27 18:15:55] 2025-11-27 18:33:48,234 | INFO     | current memory leak: 4.76 B/s (using 2194 data points, chi2=17.64)
[2025-11-27 18:15:55] 2025-11-27 18:33:48,236 | INFO     | could have reported an average CPU frequency of 2588 MHz (76 samples)
[2025-11-27 18:15:55] 2025-11-27 18:33:48,237 | INFO     | ..............................
[2025-11-27 18:15:55] 2025-11-27 18:33:48,237 | INFO     | . Timing measurements:
[2025-11-27 18:15:55] 2025-11-27 18:33:48,237 | INFO     | . get job = 0 s
[2025-11-27 18:15:55] 2025-11-27 18:33:48,237 | INFO     | . initial setup = 7 s
[2025-11-27 18:15:55] 2025-11-27 18:33:48,237 | INFO     | . payload setup = 43 s
[2025-11-27 18:15:55] 2025-11-27 18:33:48,237 | INFO     | . stage-in = 0 s
[2025-11-27 18:15:55] 2025-11-27 18:33:48,242 | INFO     | . payload execution = 134790 s
[2025-11-27 18:15:55] 2025-11-27 18:33:48,242 | INFO     | . stage-out = 14 s
[2025-11-27 18:15:55] 2025-11-27 18:33:48,242 | INFO     | . log creation = 3 s
[2025-11-27 18:15:55] 2025-11-27 18:33:48,242 | INFO     | ..............................
[2025-11-27 18:15:55] 2025-11-27 18:33:48,593 | INFO     | 
[2025-11-27 18:15:55] 2025-11-27 18:33:48,593 | INFO     | job summary report
[2025-11-27 18:15:55] 2025-11-27 18:33:48,593 | INFO     | --------------------------------------------------
[2025-11-27 18:15:55] 2025-11-27 18:33:48,593 | INFO     | PanDA job id: 6891106412
[2025-11-27 18:15:55] 2025-11-27 18:33:48,593 | INFO     | task id: 47483661
[2025-11-27 18:15:55] 2025-11-27 18:33:48,593 | INFO     | errors: (none)
[2025-11-27 18:15:55] 2025-11-27 18:33:48,594 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:15:55] 2025-11-27 18:33:48,594 | INFO     | pilot state: finished 
[2025-11-27 18:15:55] 2025-11-27 18:33:48,594 | INFO     | transexitcode: 0
[2025-11-27 18:15:55] 2025-11-27 18:33:48,594 | INFO     | exeerrorcode: 0
[2025-11-27 18:15:55] 2025-11-27 18:33:48,594 | INFO     | exeerrordiag: 
[2025-11-27 18:15:55] 2025-11-27 18:33:48,594 | INFO     | exitcode: 0
[2025-11-27 18:15:55] 2025-11-27 18:33:48,594 | INFO     | exitmsg: OK
[2025-11-27 18:15:55] 2025-11-27 18:33:48,594 | INFO     | cpuconsumptiontime: 305298 s
[2025-11-27 18:15:55] 2025-11-27 18:33:48,594 | INFO     | nevents: 1000
[2025-11-27 18:15:55] 2025-11-27 18:33:48,594 | INFO     | neventsw: 0
[2025-11-27 18:15:55] 2025-11-27 18:33:48,595 | INFO     | pid: 561718
[2025-11-27 18:15:55] 2025-11-27 18:33:48,595 | INFO     | pgrp: 561718
[2025-11-27 18:15:55] 2025-11-27 18:33:48,595 | INFO     | corecount: 9
[2025-11-27 18:15:55] 2025-11-27 18:33:48,595 | INFO     | event service: False
[2025-11-27 18:15:55] 2025-11-27 18:33:48,595 | INFO     | sizes: {0: 2284133, 1: 2284332, 2: 2284332, 12: 2284360, 21: 2284650, 23: 2284678, 134838: 2372529, 134839: 2372528, 134855: 2381578, 134857: 2381634, 134901: 2381
[2025-11-27 18:15:55] 2025-11-27 18:33:48,595 | INFO     | --------------------------------------------------
[2025-11-27 18:15:55] 2025-11-27 18:33:48,595 | INFO     | 
[2025-11-27 18:15:55] 2025-11-27 18:33:48,595 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 18:15:55] 2025-11-27 18:33:48,779 | INFO     | time since job start (134953s) is within the limit (172800.0s)
[2025-11-27 18:15:55] 2025-11-27 18:33:48,851 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,851 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,851 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,852 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,852 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,852 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,852 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,852 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,852 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,852 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,852 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,853 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,853 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,853 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,853 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,853 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,853 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,853 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:15:55] 2025-11-27 18:33:48,853 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,853 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:15:55] 2025-11-27 18:33:48,854 | INFO     | job 6891106412 has completed (purged errors)
[2025-11-27 18:15:55] 2025-11-27 18:33:48,854 | INFO     | overall cleanup function is called
[2025-11-27 18:15:55] 2025-11-27 18:33:50,015 | INFO     | --- collectZombieJob: --- 10, [561718]
[2025-11-27 18:15:55] 2025-11-27 18:33:50,015 | INFO     | zombie collector waiting for pid 561718
[2025-11-27 18:15:55] 2025-11-27 18:33:50,015 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:15:55] 2025-11-27 18:33:50,015 | INFO     | collected zombie processes
[2025-11-27 18:15:55] 2025-11-27 18:33:50,015 | INFO     | will attempt to kill all subprocesses of pid=561718
[2025-11-27 18:15:55] 2025-11-27 18:33:51,111 | INFO     | process IDs to be killed: [561718] (in reverse order)
[2025-11-27 18:15:55] 2025-11-27 18:33:51,660 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:15:55] 2025-11-27 18:33:51,660 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:15:55] 2025-11-27 18:33:51,677 | INFO     | did not find any defunct processes belonging to 561718
[2025-11-27 18:15:55] 2025-11-27 18:33:51,698 | INFO     | did not find any defunct processes belonging to 561718
[2025-11-27 18:15:55] 2025-11-27 18:33:51,700 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:15:55] 2025-11-27 18:33:51,700 | INFO     | ready for new job
[2025-11-27 18:15:55] 2025-11-27 18:33:51,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:15:55] 2025-11-27 18:33:51,718 | INFO     | ***************************************
[2025-11-27 18:15:55] 2025-11-27 18:33:51,718 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:15:55] 2025-11-27 18:33:51,718 | INFO     | ***************************************
[2025-11-27 18:15:55] 2025-11-27 18:33:51,719 | INFO     | 
[2025-11-27 18:15:55] 2025-11-27 18:33:51,725 | INFO     | architecture information:
[2025-11-27 18:15:55] 2025-11-27 18:33:51,725 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:15:55] 2025-11-27 18:33:51,769 | INFO     | cat /etc/os-release:
[2025-11-27 18:15:55] NAME="CentOS Linux"
[2025-11-27 18:15:55] VERSION="7 (Core)"
[2025-11-27 18:15:55] ID="centos"
[2025-11-27 18:15:55] ID_LIKE="rhel fedora"
[2025-11-27 18:15:55] VERSION_ID="7"
[2025-11-27 18:15:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:15:55] ANSI_COLOR="0;31"
[2025-11-27 18:15:55] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:15:55] HOME_URL="https://www.centos.org/"
[2025-11-27 18:15:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:15:55] 
[2025-11-27 18:15:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:15:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:15:55] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:15:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:15:55] 
[2025-11-27 18:15:55] 2025-11-27 18:33:51,769 | INFO     | ***************************************
[2025-11-27 18:15:55] 2025-11-27 18:33:52,273 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 18:15:55] 2025-11-27 18:33:52,335 | INFO     | sufficient remaining disk space (49137319936 B)
[2025-11-27 18:15:55] 2025-11-27 18:33:52,335 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:15:55] 2025-11-27 18:33:52,335 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:15:55] 2025-11-27 18:33:52,336 | INFO     | update_server=False
[2025-11-27 18:15:55] 2025-11-27 18:33:52,336 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:15:55] 2025-11-27 18:33:52,485 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:15:55] 2025-11-27 18:33:52,485 | INFO     | aborting loop
[2025-11-27 18:15:55] 2025-11-27 18:33:52,706 | INFO     | all data control threads have been joined
[2025-11-27 18:15:55] 2025-11-27 18:33:53,240 | INFO     | all job control threads have been joined
[2025-11-27 18:15:55] 2025-11-27 18:33:53,342 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:53,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:15:55] 2025-11-27 18:33:53,492 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:53,561 | INFO     | all payload control threads have been joined
[2025-11-27 18:15:55] 2025-11-27 18:33:53,568 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:15:55] 2025-11-27 18:33:53,689 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:53,700 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:53,712 | INFO     | [data] control thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:54,048 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:54,246 | INFO     | [job] control thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:54,254 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:54,358 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:54,567 | INFO     | [payload] control thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:54,576 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:54,715 | INFO     | [job] validate thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:54,726 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:54,737 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:55,365 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:33:55,504 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:15:55] 2025-11-27 18:33:59,521 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:15:55] 2025-11-27 18:34:29,101 | INFO     | PID=544963 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 18:15:55] 2025-11-27 18:34:29,101 | INFO     | .. there are 8 such processes running
[2025-11-27 18:15:55] 2025-11-27 18:34:29,117 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:15:55] 2025-11-27 18:34:29,118 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:15:55] 2025-11-27 18:34:29,118 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:15:55] 2025-11-27 18:34:47,982 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:15:55] 2025-11-27 18:34:48,524 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139944235595584)>', '<ExcThread(monitor, started 139943431096064)>']
[2025-11-27 18:15:55] 2025-11-27 18:34:49,382 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:15:55] 2025-11-27 18:34:49,382 | INFO     | [monitor] control thread has ended
[2025-11-27 18:15:55] 2025-11-27 18:34:50,512 [wrapper] supervise_pilot (15 min periods counter: 151)
[2025-11-27 18:15:55] 2025-11-27 18:34:53,550 | INFO     | all workflow threads have been joined
[2025-11-27 18:15:55] 2025-11-27 18:34:53,550 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:15:55] 2025-11-27 18:34:53,550 | INFO     | traces error code: 0
[2025-11-27 18:15:55] 2025-11-27 18:34:53,551 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:15:55] 2025-11-27 18:34:55,681 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:15:55] 2025-11-27 18:34:55,823 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:15:55] 2025-11-27 18:34:55,914 [wrapper] pilotpid: 544963
[2025-11-27 18:15:55] 2025-11-27 18:34:55,998 [wrapper] Pilot exit status: 0
[2025-11-27 18:15:55] 2025-11-27 18:34:56,204 [wrapper] pandaids: 6891106412
[2025-11-27 18:15:55] 2025-11-27 18:34:56,955 [wrapper] cleanup supervisor_pilot  640603 544964
[2025-11-27 18:15:55] 2025-11-27 18:34:57,034 [wrapper] Test setup, not cleaning
[2025-11-27 18:15:55] 2025-11-27 18:34:57,129 [wrapper] apfmon messages muted
[2025-11-27 18:15:55] 2025-11-27 18:34:57,195 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:15:55] 2025-11-27 18:34:57,273 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:15:55]  *** Error codes and diagnostics ***
[2025-11-27 18:15:55]     "exeErrorCode": 0,
[2025-11-27 18:15:55]     "exeErrorDiag": "",
[2025-11-27 18:15:55]     "pilotErrorCode": 0,
[2025-11-27 18:15:55]     "pilotErrorDiag": "",
[2025-11-27 18:15:55]  *** Listing of results directory ***
[2025-11-27 18:15:55] total 1338188
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 18:15:55] -rwx------. 1 boincer umatlas     36292 Nov 18 02:00 runpilot2-wrapper.sh
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:15:55] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-27 18:15:55] -rw-r--r--. 2 boincer umatlas 409575943 Nov 26 00:03 EVNT.47483658._000261.pool.root.1
[2025-11-27 18:15:55] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:03 start_atlas.sh
[2025-11-27 18:15:55] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-27 18:15:55] -rw-r--r--. 2 boincer umatlas    590093 Nov 26 00:03 input.tar.gz
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:03 pandaJob.out
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-27 18:15:55] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:00 boinc_task_state.xml
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas 916513493 Nov 27 13:30 HITS.47483661._002302.pool.root.1
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas      1057 Nov 27 13:32 memory_monitor_summary.json
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:32 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas   3134597 Nov 27 13:32 log.47483661._002302.job.log.tgz.1
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas      8621 Nov 27 13:33 heartbeat.json
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas        95 Nov 27 13:34 pilot_heartbeat.json
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas      4822 Nov 27 13:34 pilotlog.txt
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas  17013241 Nov 27 13:34 log.47483661._002302.job.log.1
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas       353 Nov 27 13:34 output.list
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:34 runtime_log
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas  20162560 Nov 27 13:34 result.tar.gz
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas      8705 Nov 27 13:34 runtime_log.err
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas       663 Nov 27 13:34 6CGKDmQsUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmgQKODmoVDuNo.diag
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas      6661 Nov 27 18:09 init_data.xml
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:15 boinc_mmap_file
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:15 wrapper_checkpoint.txt
[2025-11-27 18:15:55] -rw-r--r--. 1 boincer umatlas     21860 Nov 27 18:15 stderr.txt
[2025-11-27 18:15:55] HITS file was successfully produced:
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas 916513493 Nov 27 13:30 shared/HITS.pool.root.1
[2025-11-27 18:15:55]  *** Contents of shared directory: ***
[2025-11-27 18:15:55] total 1315312
[2025-11-27 18:15:55] -rw-r--r--. 2 boincer umatlas 409575943 Nov 26 00:03 ATLAS.root_0
[2025-11-27 18:15:55] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:03 start_atlas.sh
[2025-11-27 18:15:55] -rw-r--r--. 2 boincer umatlas    590093 Nov 26 00:03 input.tar.gz
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas 916513493 Nov 27 13:30 HITS.pool.root.1
[2025-11-27 18:15:55] -rw-------. 1 boincer umatlas  20162560 Nov 27 13:34 result.tar.gz
18:15:57 (537619): run_atlas exited; CPU time 307788.351127
18:15:57 (537619): called boinc_finish(0)

</stderr_txt>
]]>

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