Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:12 (3735151): wrapper (7.7.26015): starting
00:02:12 (3735151): wrapper: running run_atlas (--nthreads 9)
[2025-11-27 00:02:12] Arguments: --nthreads 9
[2025-11-27 00:02:12] Threads: 9
[2025-11-27 00:02:12] Checking for CVMFS
[2025-11-27 00:02:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:15] 2.13.3.0 11393 31045 343720 153347 2 589 32818431 32935937 21644 16776704 0 95318156 99.390 150624911 41074 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:02:15] CVMFS is ok
[2025-11-27 00:02:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:15] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:15] Checking for apptainer binary...
[2025-11-27 00:02:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:15] Running /usr/bin/apptainer --version
[2025-11-27 00:02:15] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:16] c6-5-37-2.aglt2.org
[2025-11-27 00:02:16] apptainer works
[2025-11-27 00:02:16] Set ATHENA_PROC_NUMBER=9
[2025-11-27 00:02:16] Set ATHENA_CORE_NUMBER=9
[2025-11-27 00:02:16] Starting ATLAS job with PandaID=6891106083
[2025-11-27 00:02:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 00:22:21]  *** The last 200 lines of the pilot log: ***
[2025-11-28 00:22:21] 2025-11-28 05:21:11,300 | INFO     | time since job start (87460s) is within the limit (172800.0s)
[2025-11-28 00:22:21] 2025-11-28 05:21:12,075 | INFO     | monitor loop #4904: job 0:6891106083 is in state 'finished'
[2025-11-28 00:22:21] 2025-11-28 05:21:12,081 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:22:21] 2025-11-28 05:21:14,776 | INFO     | monitor loop #4905: job 0:6891106083 is in state 'finished'
[2025-11-28 00:22:21] 2025-11-28 05:21:14,776 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:22:21] 2025-11-28 05:21:15,657 | INFO     | PID=3744239 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:22:21] 2025-11-28 05:21:15,657 | INFO     | .. there are 27 such processes running
[2025-11-28 00:22:21] 2025-11-28 05:21:16,681 | INFO     | time since job start (87465s) is within the limit (172800.0s)
[2025-11-28 00:22:21] 2025-11-28 05:21:17,283 | INFO     | monitor loop #4906: job 0:6891106083 is in state 'finished'
[2025-11-28 00:22:21] 2025-11-28 05:21:17,284 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:22:21] 2025-11-28 05:21:18,699 | INFO     | time since job start (87467s) is within the limit (172800.0s)
[2025-11-28 00:22:21] 2025-11-28 05:21:19,792 | INFO     | monitor loop #4907: job 0:6891106083 is in state 'finished'
[2025-11-28 00:22:21] 2025-11-28 05:21:19,792 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:22:21] 2025-11-28 05:21:20,706 | INFO     | time since job start (87469s) is within the limit (172800.0s)
[2025-11-28 00:22:21] 2025-11-28 05:21:21,486 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 00:22:21] 2025-11-28 05:21:21,571 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2930.867446428572
[2025-11-28 00:22:21] 2025-11-28 05:21:21,672 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891106083/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 00:22:21] 2025-11-28 05:21:21,673 | INFO     | extracted standard info from prmon json
[2025-11-28 00:22:21] 2025-11-28 05:21:21,673 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 00:22:21] 2025-11-28 05:21:21,673 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 00:22:21] 2025-11-28 05:21:21,871 | INFO     | fitting pss+swap vs Time
[2025-11-28 00:22:21] 2025-11-28 05:21:21,873 | INFO     | sum of square deviations: 906694448046.5515
[2025-11-28 00:22:21] 2025-11-28 05:21:22,001 | INFO     | sum of deviations: 6109366996789.817
[2025-11-28 00:22:21] 2025-11-28 05:21:22,001 | INFO     | mean x: 1764263576.1195805
[2025-11-28 00:22:21] 2025-11-28 05:21:22,001 | INFO     | mean y: 3068675.702797203
[2025-11-28 00:22:21] 2025-11-28 05:21:22,001 | INFO     | intersect: -11884655671.573622
[2025-11-28 00:22:21] 2025-11-28 05:21:22,011 | INFO     | chi2: 18.15647598731121
[2025-11-28 00:22:21] 2025-11-28 05:21:22,013 | INFO     | sum of square deviations: 897217643086.1027
[2025-11-28 00:22:21] 2025-11-28 05:21:22,160 | INFO     | sum of deviations: 6667899594355.445
[2025-11-28 00:22:21] 2025-11-28 05:21:22,160 | INFO     | mean x: 1764263423.6301754
[2025-11-28 00:22:21] 2025-11-28 05:21:22,160 | INFO     | mean y: 3077661.380350877
[2025-11-28 00:22:21] 2025-11-28 05:21:22,160 | INFO     | intersect: -13108491708.004927
[2025-11-28 00:22:21] 2025-11-28 05:21:22,162 | INFO     | chi2: 14.3551513434702
[2025-11-28 00:22:21] 2025-11-28 05:21:22,162 | INFO     | current chi2=14.3551513434702 (change=20.936467222480815 %)
[2025-11-28 00:22:21] 2025-11-28 05:21:22,162 | INFO     | right removable region: 1424
[2025-11-28 00:22:21] 2025-11-28 05:21:22,169 | INFO     | sum of square deviations: 897214921629.8414
[2025-11-28 00:22:21] 2025-11-28 05:21:22,335 | INFO     | sum of deviations: 5494817887132.169
[2025-11-28 00:22:21] 2025-11-28 05:21:22,335 | INFO     | mean x: 1764263728.6308773
[2025-11-28 00:22:21] 2025-11-28 05:21:22,335 | INFO     | mean y: 3078561.487017544
[2025-11-28 00:22:21] 2025-11-28 05:21:22,336 | INFO     | intersect: -10801810724.225245
[2025-11-28 00:22:21] 2025-11-28 05:21:22,359 | INFO     | monitor loop #4908: job 0:6891106083 is in state 'finished'
[2025-11-28 00:22:21] 2025-11-28 05:21:22,359 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 00:22:21] 2025-11-28 05:21:22,360 | INFO     | chi2: 14.007328757882279
[2025-11-28 00:22:21] 2025-11-28 05:21:22,360 | INFO     | current chi2=14.007328757882279 (change=22.85216157765744 %)
[2025-11-28 00:22:21] 2025-11-28 05:21:22,360 | INFO     | left removable region: 10
[2025-11-28 00:22:21] 2025-11-28 05:21:22,362 | INFO     | sum of square deviations: 876596174954.4595
[2025-11-28 00:22:21] 2025-11-28 05:21:22,631 | INFO     | sum of deviations: 5639263612589.408
[2025-11-28 00:22:21] 2025-11-28 05:21:22,631 | INFO     | mean x: 1764263698.156294
[2025-11-28 00:22:21] 2025-11-28 05:21:22,632 | INFO     | mean y: 3097704.550212164
[2025-11-28 00:22:21] 2025-11-28 05:21:22,632 | INFO     | intersect: -11346653024.788853
[2025-11-28 00:22:21] 2025-11-28 05:21:22,670 | INFO     | chi2: 6.721729482569799
[2025-11-28 00:22:21] 2025-11-28 05:21:22,670 | INFO     | current memory leak: 6.43 B/s (using 1414 data points, chi2=6.72)
[2025-11-28 00:22:21] 2025-11-28 05:21:22,672 | INFO     | could have reported an average CPU frequency of 2829 MHz (51 samples)
[2025-11-28 00:22:21] 2025-11-28 05:21:22,672 | INFO     | ..............................
[2025-11-28 00:22:21] 2025-11-28 05:21:22,672 | INFO     | . Timing measurements:
[2025-11-28 00:22:21] 2025-11-28 05:21:22,672 | INFO     | . get job = 0 s
[2025-11-28 00:22:21] 2025-11-28 05:21:22,672 | INFO     | . initial setup = 9 s
[2025-11-28 00:22:21] 2025-11-28 05:21:22,672 | INFO     | . payload setup = 51 s
[2025-11-28 00:22:21] 2025-11-28 05:21:22,672 | INFO     | . stage-in = 0 s
[2025-11-28 00:22:21] 2025-11-28 05:21:22,722 | INFO     | . payload execution = 87251 s
[2025-11-28 00:22:21] 2025-11-28 05:21:22,722 | INFO     | . stage-out = 27 s
[2025-11-28 00:22:21] 2025-11-28 05:21:22,722 | INFO     | . log creation = 19 s
[2025-11-28 00:22:21] 2025-11-28 05:21:22,722 | INFO     | ..............................
[2025-11-28 00:22:21] 2025-11-28 05:21:22,880 | INFO     | time since job start (87471s) is within the limit (172800.0s)
[2025-11-28 00:22:21] 2025-11-28 05:21:23,383 | INFO     | 
[2025-11-28 00:22:21] 2025-11-28 05:21:23,383 | INFO     | job summary report
[2025-11-28 00:22:21] 2025-11-28 05:21:23,383 | INFO     | --------------------------------------------------
[2025-11-28 00:22:21] 2025-11-28 05:21:23,383 | INFO     | PanDA job id: 6891106083
[2025-11-28 00:22:21] 2025-11-28 05:21:23,383 | INFO     | task id: 47483661
[2025-11-28 00:22:21] 2025-11-28 05:21:23,383 | INFO     | errors: (none)
[2025-11-28 00:22:21] 2025-11-28 05:21:23,383 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 00:22:21] 2025-11-28 05:21:23,383 | INFO     | pilot state: finished 
[2025-11-28 00:22:21] 2025-11-28 05:21:23,383 | INFO     | transexitcode: 0
[2025-11-28 00:22:21] 2025-11-28 05:21:23,383 | INFO     | exeerrorcode: 0
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | exeerrordiag: 
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | exitcode: 0
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | exitmsg: OK
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | cpuconsumptiontime: 244717 s
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | nevents: 1000
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | neventsw: 0
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | pid: 3783186
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | pgrp: 3783186
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | corecount: 9
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | event service: False
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | sizes: {0: 2284077, 1: 2284161, 2: 2284332, 3: 2284388, 15: 2284388, 26: 2284416, 37: 2284572, 41: 2284862, 48: 2284890, 87305: 2349097, 87334: 2358091, 87338: 235
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | --------------------------------------------------
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | 
[2025-11-28 00:22:21] 2025-11-28 05:21:23,384 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-28 00:22:21] 2025-11-28 05:21:23,462 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,462 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,463 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,463 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,463 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,463 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,463 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,463 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,463 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,463 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,464 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,464 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,464 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,464 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,464 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,464 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,464 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,464 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 00:22:21] 2025-11-28 05:21:23,464 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,465 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 00:22:21] 2025-11-28 05:21:23,465 | INFO     | job 6891106083 has completed (purged errors)
[2025-11-28 00:22:21] 2025-11-28 05:21:23,465 | INFO     | overall cleanup function is called
[2025-11-28 00:22:21] 2025-11-28 05:21:24,499 | INFO     | --- collectZombieJob: --- 10, [3783186]
[2025-11-28 00:22:21] 2025-11-28 05:21:24,499 | INFO     | zombie collector waiting for pid 3783186
[2025-11-28 00:22:21] 2025-11-28 05:21:24,499 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 00:22:21] 2025-11-28 05:21:24,499 | INFO     | collected zombie processes
[2025-11-28 00:22:21] 2025-11-28 05:21:24,499 | INFO     | will attempt to kill all subprocesses of pid=3783186
[2025-11-28 00:22:21] 2025-11-28 05:21:29,117 | INFO     | process IDs to be killed: [3783186] (in reverse order)
[2025-11-28 00:22:21] 2025-11-28 05:21:29,354 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 00:22:21] 2025-11-28 05:21:29,355 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 00:22:21] 2025-11-28 05:21:29,404 | INFO     | did not find any defunct processes belonging to 3783186
[2025-11-28 00:22:21] 2025-11-28 05:21:29,436 | INFO     | did not find any defunct processes belonging to 3783186
[2025-11-28 00:22:21] 2025-11-28 05:21:29,443 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 00:22:21] 2025-11-28 05:21:29,443 | INFO     | ready for new job
[2025-11-28 00:22:21] 2025-11-28 05:21:29,443 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 00:22:21] 2025-11-28 05:21:29,453 | INFO     | ***************************************
[2025-11-28 00:22:21] 2025-11-28 05:21:29,453 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 00:22:21] 2025-11-28 05:21:29,453 | INFO     | ***************************************
[2025-11-28 00:22:21] 2025-11-28 05:21:29,453 | INFO     | 
[2025-11-28 00:22:21] 2025-11-28 05:21:29,456 | INFO     | architecture information:
[2025-11-28 00:22:21] 2025-11-28 05:21:29,469 | INFO     | executing command: cat /etc/os-release
[2025-11-28 00:22:21] 2025-11-28 05:21:29,516 | INFO     | cat /etc/os-release:
[2025-11-28 00:22:21] NAME="CentOS Linux"
[2025-11-28 00:22:21] VERSION="7 (Core)"
[2025-11-28 00:22:21] ID="centos"
[2025-11-28 00:22:21] ID_LIKE="rhel fedora"
[2025-11-28 00:22:21] VERSION_ID="7"
[2025-11-28 00:22:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 00:22:21] ANSI_COLOR="0;31"
[2025-11-28 00:22:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 00:22:21] HOME_URL="https://www.centos.org/"
[2025-11-28 00:22:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 00:22:21] 
[2025-11-28 00:22:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 00:22:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 00:22:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 00:22:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 00:22:21] 
[2025-11-28 00:22:21] 2025-11-28 05:21:29,517 | INFO     | ***************************************
[2025-11-28 00:22:21] 2025-11-28 05:21:30,025 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-28 00:22:21] 2025-11-28 05:21:30,126 | INFO     | sufficient remaining disk space (69128421376 B)
[2025-11-28 00:22:21] 2025-11-28 05:21:30,126 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 00:22:21] 2025-11-28 05:21:30,127 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 00:22:21] 2025-11-28 05:21:30,127 | INFO     | update_server=False
[2025-11-28 00:22:21] 2025-11-28 05:21:30,127 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 00:22:21] 2025-11-28 05:21:30,216 | INFO     | all payload control threads have been joined
[2025-11-28 00:22:21] 2025-11-28 05:21:30,343 | INFO     | all data control threads have been joined
[2025-11-28 00:22:21] 2025-11-28 05:21:30,418 | INFO     | all job control threads have been joined
[2025-11-28 00:22:21] 2025-11-28 05:21:31,093 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 00:22:21] 2025-11-28 05:21:31,117 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:22:21] 2025-11-28 05:21:31,117 | INFO     | aborting loop
[2025-11-28 00:22:21] 2025-11-28 05:21:31,132 | INFO     | [job] retrieve thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:31,188 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:31,195 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:31,224 | INFO     | [payload] control thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:31,270 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 00:22:21] 2025-11-28 05:21:31,350 | INFO     | [data] control thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:31,426 | INFO     | [job] control thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:31,541 | INFO     | [payload] failed_post thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:32,123 | INFO     | [job] job monitor thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:32,134 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:32,134 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:32,142 | INFO     | [job] validate thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:32,194 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 00:22:21] 2025-11-28 05:21:32,285 | INFO     | [data] copytool_in thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:32,501 | INFO     | [payload] validate_post thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:33,115 | INFO     | [data] copytool_out thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:33,201 | INFO     | [job] queue monitor thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:21:35,292 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 00:22:21] 2025-11-28 05:22:00,788 | INFO     | PID=3744239 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 00:22:21] 2025-11-28 05:22:00,788 | INFO     | .. there are 27 such processes running
[2025-11-28 00:22:21] 2025-11-28 05:22:00,797 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 00:22:21] 2025-11-28 05:22:00,797 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 00:22:21] 2025-11-28 05:22:00,797 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 00:22:21] 2025-11-28 05:22:14,057 | INFO     | [monitor] cgroup control has ended
[2025-11-28 00:22:21] 2025-11-28 05:22:15,086 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140478685644608)>', '<ExcThread(monitor, started 140477961590528)>']
[2025-11-28 00:22:21] 2025-11-28 05:22:15,990 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 00:22:21] 2025-11-28 05:22:15,991 | INFO     | [monitor] control thread has ended
[2025-11-28 00:22:21] 2025-11-28 05:22:20,124 | INFO     | all workflow threads have been joined
[2025-11-28 00:22:21] 2025-11-28 05:22:20,125 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 00:22:21] 2025-11-28 05:22:20,125 | INFO     | traces error code: 0
[2025-11-28 00:22:21] 2025-11-28 05:22:20,126 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 00:22:21] 2025-11-28 05:22:20,855 [wrapper] ==== pilot stdout END ====
[2025-11-28 00:22:21] 2025-11-28 05:22:20,881 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 00:22:21] 2025-11-28 05:22:20,891 [wrapper] pilotpid: 3744239
[2025-11-28 00:22:21] 2025-11-28 05:22:20,909 [wrapper] Pilot exit status: 0
[2025-11-28 00:22:21] 2025-11-28 05:22:21,001 [wrapper] pandaids: 6891106083
[2025-11-28 00:22:21] 2025-11-28 05:22:21,096 [wrapper] cleanup supervisor_pilot 3668050 3744240
[2025-11-28 00:22:21] 2025-11-28 05:22:21,125 [wrapper] Test setup, not cleaning
[2025-11-28 00:22:21] 2025-11-28 05:22:21,141 [wrapper] apfmon messages muted
[2025-11-28 00:22:21] 2025-11-28 05:22:21,157 [wrapper] ==== wrapper stdout END ====
[2025-11-28 00:22:21] 2025-11-28 05:22:21,173 [wrapper] ==== wrapper stderr END ====
[2025-11-28 00:22:21]  *** Error codes and diagnostics ***
[2025-11-28 00:22:21]     "exeErrorCode": 0,
[2025-11-28 00:22:21]     "exeErrorDiag": "",
[2025-11-28 00:22:21]     "pilotErrorCode": 0,
[2025-11-28 00:22:21]     "pilotErrorDiag": "",
[2025-11-28 00:22:21]  *** Listing of results directory ***
[2025-11-28 00:22:21] total 1320308
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:58 queuedata.json
[2025-11-28 00:22:21] -rwx------. 1 boincer umatlas     36292 Nov 18 01:59 runpilot2-wrapper.sh
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 00:22:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-28 00:22:21] -rw-r--r--. 2 boincer umatlas 409002234 Nov 27 00:02 EVNT.47483658._000252.pool.root.1
[2025-11-28 00:22:21] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:02 start_atlas.sh
[2025-11-28 00:22:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-28 00:22:21] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 00:02 input.tar.gz
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas      2773 Nov 27 00:02 pandaJob.out
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas    991570 Nov 27 00:03 agis_schedconf.cvmfs.json
[2025-11-28 00:22:21] drwx------. 5 boincer umatlas      4096 Nov 27 00:03 pilot3
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas       533 Nov 27 23:57 boinc_task_state.xml
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas 912838180 Nov 28 00:18 HITS.47483661._002216.pool.root.1
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas      1058 Nov 28 00:19 memory_monitor_summary.json
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas   1516240 Nov 28 00:20 agis_ddmendpoints.agis.ALL.json
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas      6842 Nov 28 00:20 init_data.xml
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas   2541304 Nov 28 00:20 log.47483661._002216.job.log.tgz.1
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas      8623 Nov 28 00:21 heartbeat.json
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas        95 Nov 28 00:22 pilot_heartbeat.json
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas      4824 Nov 28 00:22 pilotlog.txt
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 00:22 boinc_mmap_file
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas  10572773 Nov 28 00:22 log.47483661._002216.job.log.1
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas       353 Nov 28 00:22 output.list
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas       620 Nov 28 00:22 runtime_log
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas  13137920 Nov 28 00:22 result.tar.gz
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas       662 Nov 28 00:22 sJ4KDmqrUf8n9Rq4apOajLDm4fhM0noT9bVof3QYDmz8qMDm6bUCOo.diag
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas      8709 Nov 28 00:22 runtime_log.err
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas        29 Nov 28 00:22 wrapper_checkpoint.txt
[2025-11-28 00:22:21] -rw-r--r--. 1 boincer umatlas     21893 Nov 28 00:22 stderr.txt
[2025-11-28 00:22:21] HITS file was successfully produced:
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas 912838180 Nov 28 00:18 shared/HITS.pool.root.1
[2025-11-28 00:22:21]  *** Contents of shared directory: ***
[2025-11-28 00:22:21] total 1304300
[2025-11-28 00:22:21] -rw-r--r--. 2 boincer umatlas 409002234 Nov 27 00:02 ATLAS.root_0
[2025-11-28 00:22:21] -rw-r--r--. 2 boincer umatlas     15120 Nov 27 00:02 start_atlas.sh
[2025-11-28 00:22:21] -rw-r--r--. 2 boincer umatlas    590102 Nov 27 00:02 input.tar.gz
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas 912838180 Nov 28 00:18 HITS.pool.root.1
[2025-11-28 00:22:21] -rw-------. 1 boincer umatlas  13137920 Nov 28 00:22 result.tar.gz
00:22:23 (3735151): run_atlas exited; CPU time 246589.628485
00:22:23 (3735151): called boinc_finish(0)

</stderr_txt>
]]>

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