Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:15 (2086033): wrapper (7.7.26015): starting
00:03:15 (2086033): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:15] Arguments: --nthreads 9
[2025-11-26 00:03:15] Threads: 9
[2025-11-26 00:03:15] Checking for CVMFS
[2025-11-26 00:03:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:16] 2.13.3.0 15397 29466 220972 153309 2 254 16913124 32935936 42680 16776704 0 298789603 99.624 285169225 36406 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:16] CVMFS is ok
[2025-11-26 00:03:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:16] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:16] Checking for apptainer binary...
[2025-11-26 00:03:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:16] Running /usr/bin/apptainer --version
[2025-11-26 00:03:16] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:16] c7-16-8.aglt2.org
[2025-11-26 00:03:16] apptainer works
[2025-11-26 00:03:16] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:16] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:16] Starting ATLAS job with PandaID=6891105204
[2025-11-26 00:03:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:36:38]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:36:38] 2025-11-26 21:35:31,187 | INFO     | monitor loop #3429: job 0:6891105204 is in state 'finished'
[2025-11-26 16:36:38] 2025-11-26 21:35:31,187 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,488 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 16:36:38] 2025-11-26 21:35:31,494 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3218.5821874999997
[2025-11-26 16:36:38] 2025-11-26 21:35:31,510 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6891105204/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,511 | INFO     | extracted standard info from prmon json
[2025-11-26 16:36:38] 2025-11-26 21:35:31,511 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:36:38] 2025-11-26 21:35:31,511 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:36:38] 2025-11-26 21:35:31,526 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:36:38] 2025-11-26 21:35:31,527 | INFO     | sum of square deviations: 287387875722.769
[2025-11-26 16:36:38] 2025-11-26 21:35:31,546 | INFO     | sum of deviations: 2003434699156.6897
[2025-11-26 16:36:38] 2025-11-26 21:35:31,546 | INFO     | mean x: 1764163204.3846154
[2025-11-26 16:36:38] 2025-11-26 21:35:31,546 | INFO     | mean y: 3321091.366153846
[2025-11-26 16:36:38] 2025-11-26 21:35:31,547 | INFO     | intersect: -12294990971.210443
[2025-11-26 16:36:38] 2025-11-26 21:35:31,547 | INFO     | chi2: 8.001409864088723
[2025-11-26 16:36:38] 2025-11-26 21:35:31,548 | INFO     | sum of square deviations: 282989330565.6343
[2025-11-26 16:36:38] 2025-11-26 21:35:31,565 | INFO     | sum of deviations: 2423966129122.8936
[2025-11-26 16:36:38] 2025-11-26 21:35:31,565 | INFO     | mean x: 1764163051.8917525
[2025-11-26 16:36:38] 2025-11-26 21:35:31,565 | INFO     | mean y: 3335671.437113402
[2025-11-26 16:36:38] 2025-11-26 21:35:31,565 | INFO     | intersect: -15107733977.33142
[2025-11-26 16:36:38] 2025-11-26 21:35:31,566 | INFO     | chi2: 4.205622413570788
[2025-11-26 16:36:38] 2025-11-26 21:35:31,566 | INFO     | current chi2=4.205622413570788 (change=47.43898281668933 %)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,567 | INFO     | sum of square deviations: 278635843487.1959
[2025-11-26 16:36:38] 2025-11-26 21:35:31,584 | INFO     | sum of deviations: 2544081709393.3096
[2025-11-26 16:36:38] 2025-11-26 21:35:31,584 | INFO     | mean x: 1764162899.3979275
[2025-11-26 16:36:38] 2025-11-26 21:35:31,584 | INFO     | mean y: 3339870.9575129533
[2025-11-26 16:36:38] 2025-11-26 21:35:31,585 | INFO     | intersect: -16104331376.854437
[2025-11-26 16:36:38] 2025-11-26 21:35:31,585 | INFO     | chi2: 3.6530833796505005
[2025-11-26 16:36:38] 2025-11-26 21:35:31,586 | INFO     | current chi2=3.6530833796505005 (change=13.138103699879085 %)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,586 | INFO     | right removable region: 964
[2025-11-26 16:36:38] 2025-11-26 21:35:31,586 | INFO     | sum of square deviations: 282988566298.4162
[2025-11-26 16:36:38] 2025-11-26 21:35:31,606 | INFO     | sum of deviations: 1651985717688.8296
[2025-11-26 16:36:38] 2025-11-26 21:35:31,606 | INFO     | mean x: 1764163356.8907216
[2025-11-26 16:36:38] 2025-11-26 21:35:31,607 | INFO     | mean y: 3333263.6587628867
[2025-11-26 16:36:38] 2025-11-26 21:35:31,607 | INFO     | intersect: -10295219456.595663
[2025-11-26 16:36:38] 2025-11-26 21:35:31,607 | INFO     | chi2: 5.292170398179493
[2025-11-26 16:36:38] 2025-11-26 21:35:31,608 | INFO     | current chi2=5.292170398179493 (change=33.85952615761652 %)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,608 | INFO     | sum of square deviations: 278634906649.0509
[2025-11-26 16:36:38] 2025-11-26 21:35:31,625 | INFO     | sum of deviations: 1504367857843.9817
[2025-11-26 16:36:38] 2025-11-26 21:35:31,626 | INFO     | mean x: 1764163509.3875647
[2025-11-26 16:36:38] 2025-11-26 21:35:31,626 | INFO     | mean y: 3338433.898445596
[2025-11-26 16:36:38] 2025-11-26 21:35:31,626 | INFO     | intersect: -9521494299.44829
[2025-11-26 16:36:38] 2025-11-26 21:35:31,627 | INFO     | chi2: 4.964661167710354
[2025-11-26 16:36:38] 2025-11-26 21:35:31,627 | INFO     | current chi2=4.964661167710354 (change=6.188561702053339 %)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,627 | INFO     | left removable region: 20
[2025-11-26 16:36:38] 2025-11-26 21:35:31,628 | INFO     | sum of square deviations: 260836931124.64014
[2025-11-26 16:36:38] 2025-11-26 21:35:31,645 | INFO     | sum of deviations: 1800923438763.5989
[2025-11-26 16:36:38] 2025-11-26 21:35:31,645 | INFO     | mean x: 1764163478.9004238
[2025-11-26 16:36:38] 2025-11-26 21:35:31,645 | INFO     | mean y: 3366571.251059322
[2025-11-26 16:36:38] 2025-11-26 21:35:31,645 | INFO     | intersect: -12177130052.68877
[2025-11-26 16:36:38] 2025-11-26 21:35:31,646 | INFO     | chi2: 0.1619506261451633
[2025-11-26 16:36:38] 2025-11-26 21:35:31,646 | INFO     | current memory leak: 6.90 B/s (using 944 data points, chi2=0.16)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,648 | INFO     | time since job start (59506s) is within the limit (172800.0s)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,648 | INFO     | could have reported an average CPU frequency of 3200 MHz (36 samples)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,656 | INFO     | ..............................
[2025-11-26 16:36:38] 2025-11-26 21:35:31,656 | INFO     | . Timing measurements:
[2025-11-26 16:36:38] 2025-11-26 21:35:31,656 | INFO     | . get job = 0 s
[2025-11-26 16:36:38] 2025-11-26 21:35:31,656 | INFO     | . initial setup = 3 s
[2025-11-26 16:36:38] 2025-11-26 21:35:31,656 | INFO     | . payload setup = 19 s
[2025-11-26 16:36:38] 2025-11-26 21:35:31,656 | INFO     | . stage-in = 0 s
[2025-11-26 16:36:38] 2025-11-26 21:35:31,656 | INFO     | . payload execution = 59435 s
[2025-11-26 16:36:38] 2025-11-26 21:35:31,656 | INFO     | . stage-out = 3 s
[2025-11-26 16:36:38] 2025-11-26 21:35:31,656 | INFO     | . log creation = 0 s
[2025-11-26 16:36:38] 2025-11-26 21:35:31,656 | INFO     | ..............................
[2025-11-26 16:36:38] 2025-11-26 21:35:31,732 | INFO     | 
[2025-11-26 16:36:38] 2025-11-26 21:35:31,732 | INFO     | job summary report
[2025-11-26 16:36:38] 2025-11-26 21:35:31,732 | INFO     | --------------------------------------------------
[2025-11-26 16:36:38] 2025-11-26 21:35:31,732 | INFO     | PanDA job id: 6891105204
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | task id: 47483661
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | errors: (none)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | pilot state: finished 
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | transexitcode: 0
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | exeerrorcode: 0
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | exeerrordiag: 
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | exitcode: 0
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | exitmsg: OK
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | cpuconsumptiontime: 201195 s
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | nevents: 1000
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | neventsw: 0
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | pid: 2129957
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | pgrp: 2129957
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | corecount: 9
[2025-11-26 16:36:38] 2025-11-26 21:35:31,733 | INFO     | event service: False
[2025-11-26 16:36:38] 2025-11-26 21:35:31,734 | INFO     | sizes: {0: 2284077, 1: 2284332, 12: 2284332, 14: 2284622, 23: 2284650, 59458: 2337006, 59462: 2346056, 59471: 2346246}
[2025-11-26 16:36:38] 2025-11-26 21:35:31,734 | INFO     | --------------------------------------------------
[2025-11-26 16:36:38] 2025-11-26 21:35:31,734 | INFO     | 
[2025-11-26 16:36:38] 2025-11-26 21:35:31,734 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-26 16:36:38] 2025-11-26 21:35:31,767 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,768 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,768 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,768 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,768 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,768 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,768 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,768 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,768 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,768 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,768 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,768 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,769 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,769 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,769 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,769 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,769 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,769 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,769 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,769 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:36:38] 2025-11-26 21:35:31,769 | INFO     | job 6891105204 has completed (purged errors)
[2025-11-26 16:36:38] 2025-11-26 21:35:31,769 | INFO     | overall cleanup function is called
[2025-11-26 16:36:38] 2025-11-26 21:35:32,789 | INFO     | --- collectZombieJob: --- 10, [2129957]
[2025-11-26 16:36:38] 2025-11-26 21:35:32,790 | INFO     | zombie collector waiting for pid 2129957
[2025-11-26 16:36:38] 2025-11-26 21:35:32,790 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:36:38] 2025-11-26 21:35:32,790 | INFO     | collected zombie processes
[2025-11-26 16:36:38] 2025-11-26 21:35:32,790 | INFO     | will attempt to kill all subprocesses of pid=2129957
[2025-11-26 16:36:38] 2025-11-26 21:35:33,620 | INFO     | process IDs to be killed: [2129957] (in reverse order)
[2025-11-26 16:36:38] 2025-11-26 21:35:33,844 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:36:38] 2025-11-26 21:35:33,845 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:36:38] 2025-11-26 21:35:33,876 | INFO     | did not find any defunct processes belonging to 2129957
[2025-11-26 16:36:38] 2025-11-26 21:35:33,912 | INFO     | did not find any defunct processes belonging to 2129957
[2025-11-26 16:36:38] 2025-11-26 21:35:33,917 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:36:38] 2025-11-26 21:35:33,917 | INFO     | ready for new job
[2025-11-26 16:36:38] 2025-11-26 21:35:33,917 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:36:38] 2025-11-26 21:35:33,922 | INFO     | ***************************************
[2025-11-26 16:36:38] 2025-11-26 21:35:33,922 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:36:38] 2025-11-26 21:35:33,922 | INFO     | ***************************************
[2025-11-26 16:36:38] 2025-11-26 21:35:33,922 | INFO     | 
[2025-11-26 16:36:38] 2025-11-26 21:35:33,927 | INFO     | architecture information:
[2025-11-26 16:36:38] 2025-11-26 21:35:33,927 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:36:38] 2025-11-26 21:35:33,948 | INFO     | cat /etc/os-release:
[2025-11-26 16:36:38] NAME="CentOS Linux"
[2025-11-26 16:36:38] VERSION="7 (Core)"
[2025-11-26 16:36:38] ID="centos"
[2025-11-26 16:36:38] ID_LIKE="rhel fedora"
[2025-11-26 16:36:38] VERSION_ID="7"
[2025-11-26 16:36:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:36:38] ANSI_COLOR="0;31"
[2025-11-26 16:36:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:36:38] HOME_URL="https://www.centos.org/"
[2025-11-26 16:36:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:36:38] 
[2025-11-26 16:36:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:36:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:36:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:36:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:36:38] 
[2025-11-26 16:36:38] 2025-11-26 21:35:33,948 | INFO     | ***************************************
[2025-11-26 16:36:38] 2025-11-26 21:35:34,450 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-26 16:36:38] 2025-11-26 21:35:34,520 | INFO     | sufficient remaining disk space (60914925568 B)
[2025-11-26 16:36:38] 2025-11-26 21:35:34,520 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:36:38] 2025-11-26 21:35:34,521 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:36:38] 2025-11-26 21:35:34,521 | INFO     | update_server=False
[2025-11-26 16:36:38] 2025-11-26 21:35:34,521 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:36:38] 2025-11-26 21:35:34,700 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:36:38] 2025-11-26 21:35:34,700 | INFO     | aborting loop
[2025-11-26 16:36:38] 2025-11-26 21:35:35,083 | INFO     | all payload control threads have been joined
[2025-11-26 16:36:38] 2025-11-26 21:35:35,120 | INFO     | all data control threads have been joined
[2025-11-26 16:36:38] 2025-11-26 21:35:35,495 | INFO     | all job control threads have been joined
[2025-11-26 16:36:38] 2025-11-26 21:35:35,526 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:35,705 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:35,765 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:35,766 | INFO     | [job] validate thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:35,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:36:38] 2025-11-26 21:35:35,944 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:36,089 | INFO     | [payload] control thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:36,126 | INFO     | [data] control thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:36,188 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:36,342 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:36,447 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:36,501 | INFO     | [job] control thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:36,655 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:36,758 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:36:38] 2025-11-26 21:35:37,066 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:37,765 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:37,796 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:35:37,927 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:36:38] 2025-11-26 21:35:41,939 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:36:38] 2025-11-26 21:36:05,604 | INFO     | PID=2094667 has CPU usage=10.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 16:36:38] 2025-11-26 21:36:05,604 | INFO     | .. there are 69 such processes running
[2025-11-26 16:36:38] 2025-11-26 21:36:05,604 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:36:38] 2025-11-26 21:36:05,604 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:36:38] 2025-11-26 21:36:05,604 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:36:38] 2025-11-26 21:36:30,565 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:36:38] 2025-11-26 21:36:32,436 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139622127146816)>', '<ExcThread(monitor, started 139621753132800)>']
[2025-11-26 16:36:38] 2025-11-26 21:36:32,806 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:36:38] 2025-11-26 21:36:32,806 | INFO     | [monitor] control thread has ended
[2025-11-26 16:36:38] 2025-11-26 21:36:37,466 | INFO     | all workflow threads have been joined
[2025-11-26 16:36:38] 2025-11-26 21:36:37,466 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:36:38] 2025-11-26 21:36:37,467 | INFO     | traces error code: 0
[2025-11-26 16:36:38] 2025-11-26 21:36:37,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:36:38] 2025-11-26 21:36:37,781 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:36:38] 2025-11-26 21:36:37,787 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:36:38] 2025-11-26 21:36:37,791 [wrapper] pilotpid: 2094667
[2025-11-26 16:36:38] 2025-11-26 21:36:37,793 [wrapper] Pilot exit status: 0
[2025-11-26 16:36:38] 2025-11-26 21:36:37,826 [wrapper] pandaids: 6891105204
[2025-11-26 16:36:38] 2025-11-26 21:36:38,014 [wrapper] cleanup supervisor_pilot 1381962 2094668
[2025-11-26 16:36:38] 2025-11-26 21:36:38,018 [wrapper] Test setup, not cleaning
[2025-11-26 16:36:38] 2025-11-26 21:36:38,034 [wrapper] apfmon messages muted
[2025-11-26 16:36:38] 2025-11-26 21:36:38,044 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:36:38] 2025-11-26 21:36:38,051 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:36:38]  *** Error codes and diagnostics ***
[2025-11-26 16:36:38]     "exeErrorCode": 0,
[2025-11-26 16:36:38]     "exeErrorDiag": "",
[2025-11-26 16:36:38]     "pilotErrorCode": 0,
[2025-11-26 16:36:38]     "pilotErrorDiag": "",
[2025-11-26 16:36:38]  *** Listing of results directory ***
[2025-11-26 16:36:38] total 1345540
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 01:58 queuedata.json
[2025-11-26 16:36:38] -rwx------. 1 boincer umatlas     36292 Nov 18 01:59 runpilot2-wrapper.sh
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:36:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-26 16:36:38] -rw-r--r--. 2 boincer umatlas 411318937 Nov 26 00:03 EVNT.47483658._000236.pool.root.1
[2025-11-26 16:36:38] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:03 start_atlas.sh
[2025-11-26 16:36:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-26 16:36:38] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:03 input.tar.gz
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:03 pandaJob.out
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-26 16:36:38] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas       533 Nov 26 16:24 boinc_task_state.xml
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 16:29 init_data.xml
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas 943405567 Nov 26 16:34 HITS.47483661._002058.pool.root.1
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas      1073 Nov 26 16:35 memory_monitor_summary.json
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas   1516240 Nov 26 16:35 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas   2220881 Nov 26 16:35 log.47483661._002058.job.log.tgz.1
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas        95 Nov 26 16:35 pilot_heartbeat.json
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas      8628 Nov 26 16:35 heartbeat.json
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas        29 Nov 26 16:36 wrapper_checkpoint.txt
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas      4825 Nov 26 16:36 pilotlog.txt
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas   7370180 Nov 26 16:36 log.47483661._002058.job.log.1
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas       353 Nov 26 16:36 output.list
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas       620 Nov 26 16:36 runtime_log
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas   9615360 Nov 26 16:36 result.tar.gz
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas      8699 Nov 26 16:36 runtime_log.err
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas       664 Nov 26 16:36 IEhLDmfrUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmLOKODmdXf8Vo.diag
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 16:36 boinc_mmap_file
[2025-11-26 16:36:38] -rw-r--r--. 1 boincer umatlas     21339 Nov 26 16:36 stderr.txt
[2025-11-26 16:36:38] HITS file was successfully produced:
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas 943405567 Nov 26 16:34 shared/HITS.pool.root.1
[2025-11-26 16:36:38]  *** Contents of shared directory: ***
[2025-11-26 16:36:38] total 1332972
[2025-11-26 16:36:38] -rw-r--r--. 2 boincer umatlas 411318937 Nov 26 00:03 ATLAS.root_0
[2025-11-26 16:36:38] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:03 start_atlas.sh
[2025-11-26 16:36:38] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:03 input.tar.gz
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas 943405567 Nov 26 16:34 HITS.pool.root.1
[2025-11-26 16:36:38] -rw-------. 1 boincer umatlas   9615360 Nov 26 16:36 result.tar.gz
16:36:39 (2086033): run_atlas exited; CPU time 202826.911387
16:36:39 (2086033): called boinc_finish(0)

</stderr_txt>
]]>

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