Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:37 (2074454): wrapper (7.7.26015): starting
00:01:37 (2074454): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:01:37] Arguments: --nthreads 8
[2025-11-26 00:01:37] Threads: 8
[2025-11-26 00:01:37] Checking for CVMFS
[2025-11-26 00:01:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:39] 2.13.3.0 12531 29601 439384 153309 2 141 34561889 40960000 28111 16776704 0 148941526 99.688 135280395 39511 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:39] CVMFS is ok
[2025-11-26 00:01:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:39] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:39] Checking for apptainer binary...
[2025-11-26 00:01:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:39] Running /usr/bin/apptainer --version
[2025-11-26 00:01:39] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:40] c7-13-33.aglt2.org
[2025-11-26 00:01:40] apptainer works
[2025-11-26 00:01:40] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:01:40] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:01:40] Starting ATLAS job with PandaID=6891106312
[2025-11-26 00:01:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:25:05]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:25:05] 2025-11-26 21:24:23,014 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 16:25:05] 2025-11-26 21:24:23,018 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3290.9791562499995
[2025-11-26 16:25:05] 2025-11-26 21:24:23,028 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6891106312/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:25:05] 2025-11-26 21:24:23,029 | INFO     | extracted standard info from prmon json
[2025-11-26 16:25:05] 2025-11-26 21:24:23,029 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:25:05] 2025-11-26 21:24:23,029 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:25:05] 2025-11-26 21:24:23,042 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:25:05] 2025-11-26 21:24:23,043 | INFO     | sum of square deviations: 278653791345.3224
[2025-11-26 16:25:05] 2025-11-26 21:24:23,060 | INFO     | sum of deviations: 2839771479596.1675
[2025-11-26 16:25:05] 2025-11-26 21:24:23,060 | INFO     | mean x: 1764162814.727461
[2025-11-26 16:25:05] 2025-11-26 21:24:23,060 | INFO     | mean y: 2834251.0880829017
[2025-11-26 16:25:05] 2025-11-26 21:24:23,060 | INFO     | intersect: -17975816685.04331
[2025-11-26 16:25:05] 2025-11-26 21:24:23,061 | INFO     | chi2: 8.866796395680563
[2025-11-26 16:25:05] 2025-11-26 21:24:23,062 | INFO     | sum of square deviations: 274345050242.66254
[2025-11-26 16:25:05] 2025-11-26 21:24:23,078 | INFO     | sum of deviations: 3069199678164.021
[2025-11-26 16:25:05] 2025-11-26 21:24:23,079 | INFO     | mean x: 1764162662.23125
[2025-11-26 16:25:05] 2025-11-26 21:24:23,079 | INFO     | mean y: 2842363.279166667
[2025-11-26 16:25:05] 2025-11-26 21:24:23,079 | INFO     | intersect: -19733498680.0889
[2025-11-26 16:25:05] 2025-11-26 21:24:23,080 | INFO     | chi2: 6.889989235591817
[2025-11-26 16:25:05] 2025-11-26 21:24:23,080 | INFO     | current chi2=6.889989235591817 (change=22.294491402235675 %)
[2025-11-26 16:25:05] 2025-11-26 21:24:23,080 | INFO     | right removable region: 959
[2025-11-26 16:25:05] 2025-11-26 21:24:23,081 | INFO     | sum of square deviations: 274344622022.66263
[2025-11-26 16:25:05] 2025-11-26 21:24:23,099 | INFO     | sum of deviations: 2479749660474.823
[2025-11-26 16:25:05] 2025-11-26 21:24:23,099 | INFO     | mean x: 1764162967.23125
[2025-11-26 16:25:05] 2025-11-26 21:24:23,099 | INFO     | mean y: 2846991.379166667
[2025-11-26 16:25:05] 2025-11-26 21:24:23,099 | INFO     | intersect: -15943091685.168217
[2025-11-26 16:25:05] 2025-11-26 21:24:23,100 | INFO     | chi2: 5.1227155426733075
[2025-11-26 16:25:05] 2025-11-26 21:24:23,100 | INFO     | current chi2=5.1227155426733075 (change=42.225857975392046 %)
[2025-11-26 16:25:05] 2025-11-26 21:24:23,101 | INFO     | sum of square deviations: 270080104699.97495
[2025-11-26 16:25:05] 2025-11-26 21:24:23,117 | INFO     | sum of deviations: 2174980094373.5847
[2025-11-26 16:25:05] 2025-11-26 21:24:23,117 | INFO     | mean x: 1764163119.7350786
[2025-11-26 16:25:05] 2025-11-26 21:24:23,117 | INFO     | mean y: 2857885.9706806284
[2025-11-26 16:25:05] 2025-11-26 21:24:23,117 | INFO     | intersect: -14204111090.56406
[2025-11-26 16:25:05] 2025-11-26 21:24:23,118 | INFO     | chi2: 2.5656969188400014
[2025-11-26 16:25:05] 2025-11-26 21:24:23,118 | INFO     | current chi2=2.5656969188400014 (change=49.91529595061054 %)
[2025-11-26 16:25:05] 2025-11-26 21:24:23,119 | INFO     | sum of square deviations: 265860181459.1832
[2025-11-26 16:25:05] 2025-11-26 21:24:23,134 | INFO     | sum of deviations: 2062294075620.3157
[2025-11-26 16:25:05] 2025-11-26 21:24:23,135 | INFO     | mean x: 1764163272.2357895
[2025-11-26 16:25:05] 2025-11-26 21:24:23,135 | INFO     | mean y: 2861954.2084210524
[2025-11-26 16:25:05] 2025-11-26 21:24:23,135 | INFO     | intersect: -13681863019.611645
[2025-11-26 16:25:05] 2025-11-26 21:24:23,135 | INFO     | chi2: 2.261856537866676
[2025-11-26 16:25:05] 2025-11-26 21:24:23,136 | INFO     | current chi2=2.261856537866676 (change=11.842411266202761 %)
[2025-11-26 16:25:05] 2025-11-26 21:24:23,136 | INFO     | left removable region: 30
[2025-11-26 16:25:05] 2025-11-26 21:24:23,136 | INFO     | sum of square deviations: 248616503293.51355
[2025-11-26 16:25:05] 2025-11-26 21:24:23,152 | INFO     | sum of deviations: 2084214395512.7983
[2025-11-26 16:25:05] 2025-11-26 21:24:23,152 | INFO     | mean x: 1764163546.7427342
[2025-11-26 16:25:05] 2025-11-26 21:24:23,152 | INFO     | mean y: 2877766.488697524
[2025-11-26 16:25:05] 2025-11-26 21:24:23,152 | INFO     | intersect: -14786546955.727856
[2025-11-26 16:25:05] 2025-11-26 21:24:23,153 | INFO     | chi2: 0.12156676868152072
[2025-11-26 16:25:05] 2025-11-26 21:24:23,153 | INFO     | current memory leak: 8.38 B/s (using 929 data points, chi2=0.12)
[2025-11-26 16:25:05] 2025-11-26 21:24:23,154 | INFO     | could have reported an average CPU frequency of 3289 MHz (36 samples)
[2025-11-26 16:25:05] 2025-11-26 21:24:23,154 | INFO     | ..............................
[2025-11-26 16:25:05] 2025-11-26 21:24:23,154 | INFO     | . Timing measurements:
[2025-11-26 16:25:05] 2025-11-26 21:24:23,154 | INFO     | . get job = 0 s
[2025-11-26 16:25:05] 2025-11-26 21:24:23,154 | INFO     | . initial setup = 3 s
[2025-11-26 16:25:05] 2025-11-26 21:24:23,154 | INFO     | . payload setup = 27 s
[2025-11-26 16:25:05] 2025-11-26 21:24:23,154 | INFO     | . stage-in = 0 s
[2025-11-26 16:25:05] 2025-11-26 21:24:23,154 | INFO     | . payload execution = 58850 s
[2025-11-26 16:25:05] 2025-11-26 21:24:23,154 | INFO     | . stage-out = 3 s
[2025-11-26 16:25:05] 2025-11-26 21:24:23,154 | INFO     | . log creation = 0 s
[2025-11-26 16:25:05] 2025-11-26 21:24:23,154 | INFO     | ..............................
[2025-11-26 16:25:05] 2025-11-26 21:24:23,228 | INFO     | 
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | job summary report
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | --------------------------------------------------
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | PanDA job id: 6891106312
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | task id: 47483661
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | errors: (none)
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | pilot state: finished 
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | transexitcode: 0
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | exeerrorcode: 0
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | exeerrordiag: 
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | exitcode: 0
[2025-11-26 16:25:05] 2025-11-26 21:24:23,229 | INFO     | exitmsg: OK
[2025-11-26 16:25:05] 2025-11-26 21:24:23,230 | INFO     | cpuconsumptiontime: 197707 s
[2025-11-26 16:25:05] 2025-11-26 21:24:23,230 | INFO     | nevents: 1000
[2025-11-26 16:25:05] 2025-11-26 21:24:23,230 | INFO     | neventsw: 0
[2025-11-26 16:25:05] 2025-11-26 21:24:23,230 | INFO     | pid: 2114398
[2025-11-26 16:25:05] 2025-11-26 21:24:23,230 | INFO     | pgrp: 2114398
[2025-11-26 16:25:05] 2025-11-26 21:24:23,230 | INFO     | corecount: 8
[2025-11-26 16:25:05] 2025-11-26 21:24:23,230 | INFO     | event service: False
[2025-11-26 16:25:05] 2025-11-26 21:24:23,230 | INFO     | sizes: {0: 2284077, 1: 2284332, 2: 2284332, 12: 2284360, 16: 2284650, 23: 2284678, 58881: 2337390, 58884: 2346384, 58885: 2346440, 58890: 2346686}
[2025-11-26 16:25:05] 2025-11-26 21:24:23,230 | INFO     | --------------------------------------------------
[2025-11-26 16:25:05] 2025-11-26 21:24:23,230 | INFO     | 
[2025-11-26 16:25:05] 2025-11-26 21:24:23,230 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 16:25:05] 2025-11-26 21:24:23,252 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,252 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,252 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,252 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,252 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,252 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,252 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,252 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,252 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,252 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,252 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,253 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,253 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,253 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,253 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,253 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,253 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,253 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:25:05] 2025-11-26 21:24:23,253 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,253 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:25:05] 2025-11-26 21:24:23,253 | INFO     | job 6891106312 has completed (purged errors)
[2025-11-26 16:25:05] 2025-11-26 21:24:23,253 | INFO     | overall cleanup function is called
[2025-11-26 16:25:05] 2025-11-26 21:24:24,270 | INFO     | --- collectZombieJob: --- 10, [2114398]
[2025-11-26 16:25:05] 2025-11-26 21:24:24,270 | INFO     | zombie collector waiting for pid 2114398
[2025-11-26 16:25:05] 2025-11-26 21:24:24,270 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:25:05] 2025-11-26 21:24:24,270 | INFO     | collected zombie processes
[2025-11-26 16:25:05] 2025-11-26 21:24:24,270 | INFO     | will attempt to kill all subprocesses of pid=2114398
[2025-11-26 16:25:05] 2025-11-26 21:24:24,698 | INFO     | process IDs to be killed: [2114398] (in reverse order)
[2025-11-26 16:25:05] 2025-11-26 21:24:24,865 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:25:05] 2025-11-26 21:24:24,865 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:25:05] 2025-11-26 21:24:24,882 | INFO     | did not find any defunct processes belonging to 2114398
[2025-11-26 16:25:05] 2025-11-26 21:24:24,897 | INFO     | did not find any defunct processes belonging to 2114398
[2025-11-26 16:25:05] 2025-11-26 21:24:24,898 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:25:05] 2025-11-26 21:24:24,898 | INFO     | ready for new job
[2025-11-26 16:25:05] 2025-11-26 21:24:24,898 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:25:05] 2025-11-26 21:24:24,902 | INFO     | ***************************************
[2025-11-26 16:25:05] 2025-11-26 21:24:24,902 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:25:05] 2025-11-26 21:24:24,902 | INFO     | ***************************************
[2025-11-26 16:25:05] 2025-11-26 21:24:24,902 | INFO     | 
[2025-11-26 16:25:05] 2025-11-26 21:24:24,905 | INFO     | architecture information:
[2025-11-26 16:25:05] 2025-11-26 21:24:24,905 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:25:05] 2025-11-26 21:24:24,917 | INFO     | cat /etc/os-release:
[2025-11-26 16:25:05] NAME="CentOS Linux"
[2025-11-26 16:25:05] VERSION="7 (Core)"
[2025-11-26 16:25:05] ID="centos"
[2025-11-26 16:25:05] ID_LIKE="rhel fedora"
[2025-11-26 16:25:05] VERSION_ID="7"
[2025-11-26 16:25:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:25:05] ANSI_COLOR="0;31"
[2025-11-26 16:25:05] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:25:05] HOME_URL="https://www.centos.org/"
[2025-11-26 16:25:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:25:05] 
[2025-11-26 16:25:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:25:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:25:05] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:25:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:25:05] 
[2025-11-26 16:25:05] 2025-11-26 21:24:24,917 | INFO     | ***************************************
[2025-11-26 16:25:05] 2025-11-26 21:24:25,421 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 16:25:05] 2025-11-26 21:24:25,440 | INFO     | sufficient remaining disk space (79245082624 B)
[2025-11-26 16:25:05] 2025-11-26 21:24:25,440 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:25:05] 2025-11-26 21:24:25,441 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:25:05] 2025-11-26 21:24:25,441 | INFO     | update_server=False
[2025-11-26 16:25:05] 2025-11-26 21:24:25,441 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:25:05] 2025-11-26 21:24:25,441 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:25:05] 2025-11-26 21:24:25,483 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 16:25:05] 2025-11-26 21:24:25,483 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 16:25:05] 2025-11-26 21:24:25,483 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:25:05] 2025-11-26 21:24:25,483 | INFO     | will abort loop
[2025-11-26 16:25:05] 2025-11-26 21:24:25,512 | INFO     | all job control threads have been joined
[2025-11-26 16:25:05] 2025-11-26 21:24:25,879 | INFO     | all data control threads have been joined
[2025-11-26 16:25:05] 2025-11-26 21:24:26,081 | INFO     | all payload control threads have been joined
[2025-11-26 16:25:05] 2025-11-26 21:24:26,442 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:26,491 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:26,518 | INFO     | [job] control thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:26,797 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:26,884 | INFO     | [data] control thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:27,086 | INFO     | [payload] control thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:27,349 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:27,405 | INFO     | [job] validate thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:27,446 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:27,655 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:27,769 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:27,939 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:28,043 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:28,242 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:25:05] 2025-11-26 21:24:28,437 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:25:05] 2025-11-26 21:24:29,249 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:32,453 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:36,127 | INFO     | job.realtimelogging is not enabled
[2025-11-26 16:25:05] 2025-11-26 21:24:37,132 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:25:05] 2025-11-26 21:24:55,903 | INFO     | PID=2089524 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:25:05] 2025-11-26 21:24:55,904 | INFO     | .. there are 40 such processes running
[2025-11-26 16:25:05] 2025-11-26 21:24:55,904 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:25:05] 2025-11-26 21:24:55,904 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:25:05] 2025-11-26 21:24:55,904 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:25:05] 2025-11-26 21:24:59,616 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:25:05] 2025-11-26 21:25:00,343 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140564276819776)>', '<ExcThread(monitor, started 140563181455104)>']
[2025-11-26 16:25:05] 2025-11-26 21:25:00,932 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:25:05] 2025-11-26 21:25:00,932 | INFO     | [monitor] control thread has ended
[2025-11-26 16:25:05] 2025-11-26 21:25:05,369 | INFO     | all workflow threads have been joined
[2025-11-26 16:25:05] 2025-11-26 21:25:05,369 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:25:05] 2025-11-26 21:25:05,369 | INFO     | traces error code: 0
[2025-11-26 16:25:05] 2025-11-26 21:25:05,369 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:25:05] 2025-11-26 21:25:05,569 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:25:05] 2025-11-26 21:25:05,573 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:25:05] 2025-11-26 21:25:05,576 [wrapper] pilotpid: 2089524
[2025-11-26 16:25:05] 2025-11-26 21:25:05,580 [wrapper] Pilot exit status: 0
[2025-11-26 16:25:05] 2025-11-26 21:25:05,597 [wrapper] pandaids: 6891106312
[2025-11-26 16:25:05] 2025-11-26 21:25:05,713 [wrapper] cleanup supervisor_pilot 2691842 2089525
[2025-11-26 16:25:05] 2025-11-26 21:25:05,716 [wrapper] Test setup, not cleaning
[2025-11-26 16:25:05] 2025-11-26 21:25:05,720 [wrapper] apfmon messages muted
[2025-11-26 16:25:05] 2025-11-26 21:25:05,723 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:25:05] 2025-11-26 21:25:05,726 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:25:05]  *** Error codes and diagnostics ***
[2025-11-26 16:25:05]     "exeErrorCode": 0,
[2025-11-26 16:25:05]     "exeErrorDiag": "",
[2025-11-26 16:25:05]     "pilotErrorCode": 0,
[2025-11-26 16:25:05]     "pilotErrorDiag": "",
[2025-11-26 16:25:05]  *** Listing of results directory ***
[2025-11-26 16:25:05] total 1312520
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-26 16:25:05] -rwx------. 1 boincer umatlas     36292 Nov 18 02:00 runpilot2-wrapper.sh
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:25:05] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-26 16:25:05] -rw-r--r--. 2 boincer umatlas 409674587 Nov 26 00:01 EVNT.47483658._000257.pool.root.1
[2025-11-26 16:25:05] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:01 start_atlas.sh
[2025-11-26 16:25:05] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-26 16:25:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:01 input.tar.gz
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:01 pandaJob.out
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-26 16:25:05] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas       533 Nov 26 16:18 boinc_task_state.xml
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas      6902 Nov 26 16:19 init_data.xml
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas 910901833 Nov 26 16:23 HITS.47483661._002266.pool.root.1
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas        95 Nov 26 16:24 pilot_heartbeat.json
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas      1048 Nov 26 16:24 memory_monitor_summary.json
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas   1516240 Nov 26 16:24 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas   2127705 Nov 26 16:24 log.47483661._002266.job.log.tgz.1
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas      8579 Nov 26 16:24 heartbeat.json
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 16:25 boinc_mmap_file
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas        29 Nov 26 16:25 wrapper_checkpoint.txt
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas      5082 Nov 26 16:25 pilotlog.txt
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas   7633986 Nov 26 16:25 log.47483661._002266.job.log.1
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas       353 Nov 26 16:25 output.list
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas       620 Nov 26 16:25 runtime_log
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas   9779200 Nov 26 16:25 result.tar.gz
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas      8704 Nov 26 16:25 runtime_log.err
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas       660 Nov 26 16:25 oarNDmPsUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmAQKODmhQenEo.diag
[2025-11-26 16:25:05] -rw-r--r--. 1 boincer umatlas     21316 Nov 26 16:25 stderr.txt
[2025-11-26 16:25:05] HITS file was successfully produced:
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas 910901833 Nov 26 16:23 shared/HITS.pool.root.1
[2025-11-26 16:25:05]  *** Contents of shared directory: ***
[2025-11-26 16:25:05] total 1299788
[2025-11-26 16:25:05] -rw-r--r--. 2 boincer umatlas 409674587 Nov 26 00:01 ATLAS.root_0
[2025-11-26 16:25:05] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:01 start_atlas.sh
[2025-11-26 16:25:05] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:01 input.tar.gz
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas 910901833 Nov 26 16:23 HITS.pool.root.1
[2025-11-26 16:25:05] -rw-------. 1 boincer umatlas   9779200 Nov 26 16:25 result.tar.gz
16:25:07 (2074454): run_atlas exited; CPU time 197946.356593
16:25:07 (2074454): called boinc_finish(0)

</stderr_txt>
]]>

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