Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:36:54 (1613158): wrapper (7.7.26015): starting
11:36:54 (1613158): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 11:36:54] Arguments: --nthreads 9
[2025-11-26 11:36:54] Threads: 9
[2025-11-26 11:36:54] Checking for CVMFS
[2025-11-26 11:36:54] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:36:54] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:36:54] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:36:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:36:55] 2.13.3.0 9456 30299 343956 153328 3 406 32361694 32935937 22633 16776704 0 96391266 99.400 145571697 40850 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 11:36:55] CVMFS is ok
[2025-11-26 11:36:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:36:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:36:55] Further information can be found at the LHC@home message board.
[2025-11-26 11:36:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:36:55] Checking for apptainer binary...
[2025-11-26 11:36:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:36:55] Running /usr/bin/apptainer --version
[2025-11-26 11:36:55] apptainer version 1.4.4-1.el9
[2025-11-26 11:36:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:36:56] c6-5-7-2.aglt2.org
[2025-11-26 11:36:56] apptainer works
[2025-11-26 11:36:56] Set ATHENA_PROC_NUMBER=9
[2025-11-26 11:36:56] Set ATHENA_CORE_NUMBER=9
[2025-11-26 11:36:56] Starting ATLAS job with PandaID=6896714964
[2025-11-26 11:36:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 16:33:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 16:33:24] 2025-11-27 20:04:55,520 | INFO     | time since job start (98845s) is within the limit (172800.0s)
[2025-11-27 16:33:24] 2025-11-27 20:04:56,041 | INFO     | monitor loop #5845: job 0:6896714964 is in state 'finished'
[2025-11-27 16:33:24] 2025-11-27 20:04:56,042 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:33:24] 2025-11-27 20:04:57,527 | INFO     | time since job start (98847s) is within the limit (172800.0s)
[2025-11-27 16:33:24] 2025-11-27 20:04:58,562 | INFO     | monitor loop #5846: job 0:6896714964 is in state 'finished'
[2025-11-27 16:33:24] 2025-11-27 20:04:58,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:33:24] 2025-11-27 20:04:59,534 | INFO     | time since job start (98849s) is within the limit (172800.0s)
[2025-11-27 16:33:24] 2025-11-27 20:05:01,116 | INFO     | monitor loop #5847: job 0:6896714964 is in state 'finished'
[2025-11-27 16:33:24] 2025-11-27 20:05:01,116 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:33:24] 2025-11-27 20:05:01,590 | INFO     | time since job start (98851s) is within the limit (172800.0s)
[2025-11-27 16:33:24] 2025-11-27 20:05:03,597 | INFO     | time since job start (98853s) is within the limit (172800.0s)
[2025-11-27 16:33:24] 2025-11-27 20:05:03,655 | INFO     | monitor loop #5848: job 0:6896714964 is in state 'finished'
[2025-11-27 16:33:24] 2025-11-27 20:05:03,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 16:33:24] 2025-11-27 20:05:03,787 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 16:33:24] 2025-11-27 20:05:03,799 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2849.6743928571427
[2025-11-27 16:33:24] 2025-11-27 20:05:03,815 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896714964/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 16:33:24] 2025-11-27 20:05:03,816 | INFO     | extracted standard info from prmon json
[2025-11-27 16:33:24] 2025-11-27 20:05:03,816 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 16:33:24] 2025-11-27 20:05:03,816 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 16:33:24] 2025-11-27 20:05:03,855 | INFO     | fitting pss+swap vs Time
[2025-11-27 16:33:24] 2025-11-27 20:05:03,884 | INFO     | sum of square deviations: 1315908696761.063
[2025-11-27 16:33:24] 2025-11-27 20:05:04,049 | INFO     | sum of deviations: 4517474478381.071
[2025-11-27 16:33:24] 2025-11-27 20:05:04,050 | INFO     | mean x: 1764224473.343422
[2025-11-27 16:33:24] 2025-11-27 20:05:04,050 | INFO     | mean y: 3116907.3218035824
[2025-11-27 16:33:24] 2025-11-27 20:05:04,050 | INFO     | intersect: -6053411978.064325
[2025-11-27 16:33:24] 2025-11-27 20:05:04,055 | INFO     | chi2: 19.996539869605453
[2025-11-27 16:33:24] 2025-11-27 20:05:04,057 | INFO     | sum of square deviations: 1303755596316.4146
[2025-11-27 16:33:24] 2025-11-27 20:05:04,138 | INFO     | sum of deviations: 5163978298283.968
[2025-11-27 16:33:24] 2025-11-27 20:05:04,139 | INFO     | mean x: 1764224320.8494425
[2025-11-27 16:33:24] 2025-11-27 20:05:04,139 | INFO     | mean y: 3125018.0204460965
[2025-11-27 16:33:24] 2025-11-27 20:05:04,139 | INFO     | intersect: -6984700101.895851
[2025-11-27 16:33:24] 2025-11-27 20:05:04,140 | INFO     | chi2: 16.065007540784705
[2025-11-27 16:33:24] 2025-11-27 20:05:04,141 | INFO     | current chi2=16.065007540784705 (change=19.66106313621107 %)
[2025-11-27 16:33:24] 2025-11-27 20:05:04,141 | INFO     | right removable region: 1613
[2025-11-27 16:33:24] 2025-11-27 20:05:04,146 | INFO     | sum of square deviations: 1303753479121.0166
[2025-11-27 16:33:24] 2025-11-27 20:05:04,228 | INFO     | sum of deviations: 3908793561229.0576
[2025-11-27 16:33:24] 2025-11-27 20:05:04,229 | INFO     | mean x: 1764224625.8506815
[2025-11-27 16:33:24] 2025-11-27 20:05:04,229 | INFO     | mean y: 3124541.8965303595
[2025-11-27 16:33:24] 2025-11-27 20:05:04,229 | INFO     | intersect: -5286211186.462274
[2025-11-27 16:33:24] 2025-11-27 20:05:04,236 | INFO     | chi2: 16.941749588068255
[2025-11-27 16:33:24] 2025-11-27 20:05:04,236 | INFO     | current chi2=16.941749588068255 (change=15.276594358109172 %)
[2025-11-27 16:33:24] 2025-11-27 20:05:04,236 | INFO     | left removable region: 10
[2025-11-27 16:33:24] 2025-11-27 20:05:04,238 | INFO     | sum of square deviations: 1277279778870.1792
[2025-11-27 16:33:24] 2025-11-27 20:05:04,321 | INFO     | sum of deviations: 4472377856826.136
[2025-11-27 16:33:24] 2025-11-27 20:05:04,321 | INFO     | mean x: 1764224595.3574548
[2025-11-27 16:33:24] 2025-11-27 20:05:04,321 | INFO     | mean y: 3136543.694323144
[2025-11-27 16:33:24] 2025-11-27 20:05:04,321 | INFO     | intersect: -6174271996.918521
[2025-11-27 16:33:24] 2025-11-27 20:05:04,327 | INFO     | chi2: 12.134152026453235
[2025-11-27 16:33:24] 2025-11-27 20:05:04,327 | INFO     | current memory leak: 3.50 B/s (using 1603 data points, chi2=12.13)
[2025-11-27 16:33:24] 2025-11-27 20:05:04,329 | INFO     | could have reported an average CPU frequency of 2927 MHz (57 samples)
[2025-11-27 16:33:24] 2025-11-27 20:05:04,329 | INFO     | ..............................
[2025-11-27 16:33:24] 2025-11-27 20:05:04,329 | INFO     | . Timing measurements:
[2025-11-27 16:33:24] 2025-11-27 20:05:04,329 | INFO     | . get job = 0 s
[2025-11-27 16:33:24] 2025-11-27 20:05:04,329 | INFO     | . initial setup = 5 s
[2025-11-27 16:33:24] 2025-11-27 20:05:04,329 | INFO     | . payload setup = 17 s
[2025-11-27 16:33:24] 2025-11-27 20:05:04,329 | INFO     | . stage-in = 0 s
[2025-11-27 16:33:24] 2025-11-27 20:05:04,330 | INFO     | . payload execution = 98748 s
[2025-11-27 16:33:24] 2025-11-27 20:05:04,330 | INFO     | . stage-out = 9 s
[2025-11-27 16:33:24] 2025-11-27 20:05:04,330 | INFO     | . log creation = 1 s
[2025-11-27 16:33:24] 2025-11-27 20:05:04,330 | INFO     | ..............................
[2025-11-27 16:33:24] 2025-11-27 20:05:04,553 | INFO     | 
[2025-11-27 16:33:24] 2025-11-27 20:05:04,553 | INFO     | job summary report
[2025-11-27 16:33:24] 2025-11-27 20:05:04,553 | INFO     | --------------------------------------------------
[2025-11-27 16:33:24] 2025-11-27 20:05:04,553 | INFO     | PanDA job id: 6896714964
[2025-11-27 16:33:24] 2025-11-27 20:05:04,553 | INFO     | task id: 47556173
[2025-11-27 16:33:24] 2025-11-27 20:05:04,553 | INFO     | errors: (none)
[2025-11-27 16:33:24] 2025-11-27 20:05:04,553 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | pilot state: finished 
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | transexitcode: 0
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | exeerrorcode: 0
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | exeerrordiag: 
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | exitcode: 0
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | exitmsg: OK
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | cpuconsumptiontime: 251189 s
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | nevents: 1000
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | neventsw: 0
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | pid: 1624297
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | pgrp: 1624297
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | corecount: 9
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | event service: False
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | sizes: {0: 2283485, 1: 2284086, 2: 2284198, 3: 2284397, 14: 2284397, 17: 2284687, 25: 2284843, 98770: 2355015, 98781: 2364009, 98782: 2364065, 98814: 2364311}
[2025-11-27 16:33:24] 2025-11-27 20:05:04,554 | INFO     | --------------------------------------------------
[2025-11-27 16:33:24] 2025-11-27 20:05:04,555 | INFO     | 
[2025-11-27 16:33:24] 2025-11-27 20:05:04,555 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 16:33:24] 2025-11-27 20:05:04,656 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,656 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,656 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,656 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,656 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,656 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,656 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,657 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 16:33:24] 2025-11-27 20:05:04,658 | INFO     | job 6896714964 has completed (purged errors)
[2025-11-27 16:33:24] 2025-11-27 20:05:04,658 | INFO     | overall cleanup function is called
[2025-11-27 16:33:24] 2025-11-27 20:05:05,763 | INFO     | --- collectZombieJob: --- 10, [1624297]
[2025-11-27 16:33:24] 2025-11-27 20:05:05,763 | INFO     | zombie collector waiting for pid 1624297
[2025-11-27 16:33:24] 2025-11-27 20:05:05,764 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 16:33:24] 2025-11-27 20:05:05,764 | INFO     | collected zombie processes
[2025-11-27 16:33:24] 2025-11-27 20:05:05,764 | INFO     | will attempt to kill all subprocesses of pid=1624297
[2025-11-27 16:33:24] 2025-11-27 20:05:07,167 | INFO     | PID=1617011 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:33:24] 2025-11-27 20:05:07,167 | INFO     | .. there are 32 such processes running
[2025-11-27 16:33:24] 2025-11-27 20:05:07,267 | INFO     | process IDs to be killed: [1624297] (in reverse order)
[2025-11-27 16:33:24] 2025-11-27 20:05:07,540 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 16:33:24] 2025-11-27 20:05:07,540 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 16:33:24] 2025-11-27 20:05:07,568 | INFO     | did not find any defunct processes belonging to 1624297
[2025-11-27 16:33:24] 2025-11-27 20:05:07,585 | INFO     | did not find any defunct processes belonging to 1624297
[2025-11-27 16:33:24] 2025-11-27 20:05:07,596 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 16:33:24] 2025-11-27 20:05:07,596 | INFO     | ready for new job
[2025-11-27 16:33:24] 2025-11-27 20:05:07,596 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 16:33:24] 2025-11-27 20:05:07,613 | INFO     | ***************************************
[2025-11-27 16:33:24] 2025-11-27 20:05:07,613 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 16:33:24] 2025-11-27 20:05:07,613 | INFO     | ***************************************
[2025-11-27 16:33:24] 2025-11-27 20:05:07,613 | INFO     | 
[2025-11-27 16:33:24] 2025-11-27 20:05:07,616 | INFO     | architecture information:
[2025-11-27 16:33:24] 2025-11-27 20:05:07,617 | INFO     | executing command: cat /etc/os-release
[2025-11-27 16:33:24] 2025-11-27 20:05:07,731 | INFO     | cat /etc/os-release:
[2025-11-27 16:33:24] NAME="CentOS Linux"
[2025-11-27 16:33:24] VERSION="7 (Core)"
[2025-11-27 16:33:24] ID="centos"
[2025-11-27 16:33:24] ID_LIKE="rhel fedora"
[2025-11-27 16:33:24] VERSION_ID="7"
[2025-11-27 16:33:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 16:33:24] ANSI_COLOR="0;31"
[2025-11-27 16:33:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 16:33:24] HOME_URL="https://www.centos.org/"
[2025-11-27 16:33:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 16:33:24] 
[2025-11-27 16:33:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 16:33:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 16:33:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 16:33:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 16:33:24] 
[2025-11-27 16:33:24] 2025-11-27 20:05:07,731 | INFO     | ***************************************
[2025-11-27 16:33:24] 2025-11-27 20:05:08,237 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 16:33:24] 2025-11-27 20:05:08,445 | INFO     | sufficient remaining disk space (68631396352 B)
[2025-11-27 16:33:24] 2025-11-27 20:05:08,445 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 16:33:24] 2025-11-27 20:05:08,445 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 16:33:24] 2025-11-27 20:05:08,445 | INFO     | update_server=False
[2025-11-27 16:33:24] 2025-11-27 20:05:08,445 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 16:33:24] 2025-11-27 20:05:08,490 | INFO     | all data control threads have been joined
[2025-11-27 16:33:24] 2025-11-27 20:05:08,599 | INFO     | all job control threads have been joined
[2025-11-27 16:33:24] 2025-11-27 20:05:08,706 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 16:33:24] 2025-11-27 20:05:08,708 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 16:33:24] 2025-11-27 20:05:08,708 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:33:24] 2025-11-27 20:05:08,708 | INFO     | will abort loop
[2025-11-27 16:33:24] 2025-11-27 20:05:08,799 | INFO     | all payload control threads have been joined
[2025-11-27 16:33:24] 2025-11-27 20:05:09,334 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 16:33:24] 2025-11-27 20:05:09,476 | INFO     | [job] retrieve thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:09,496 | INFO     | [data] control thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:09,594 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 16:33:24] 2025-11-27 20:05:09,606 | INFO     | [job] control thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:09,713 | INFO     | [job] job monitor thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:09,805 | INFO     | [payload] control thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:09,837 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:09,838 | INFO     | [job] validate thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:09,840 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 16:33:24] 2025-11-27 20:05:10,212 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:10,213 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:10,235 | INFO     | [data] copytool_in thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:10,290 | INFO     | [payload] failed_post thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:10,331 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:10,393 | INFO     | [payload] validate_post thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:10,600 | INFO     | [job] queue monitor thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:11,340 | INFO     | [data] copytool_out thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:13,858 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 16:33:24] 2025-11-27 20:05:29,892 | INFO     | [monitor] cgroup control has ended
[2025-11-27 16:33:24] 2025-11-27 20:05:30,682 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139837416965952)>', '<ExcThread(monitor, started 139836912543488)>']
[2025-11-27 16:33:24] 2025-11-27 20:05:35,710 | INFO     | all workflow threads have been joined
[2025-11-27 16:33:24] 2025-11-27 20:05:35,710 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 16:33:24] 2025-11-27 20:05:35,711 | INFO     | traces error code: 0
[2025-11-27 16:33:24] 2025-11-27 20:05:35,711 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 16:33:24] 2025-11-27 20:05:41,765 | INFO     | PID=1617011 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 16:33:24] 2025-11-27 20:05:41,765 | INFO     | .. there are 32 such processes running
[2025-11-27 16:33:24] 2025-11-27 20:05:41,765 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 16:33:24] 2025-11-27 20:05:41,765 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 16:33:24] 2025-11-27 20:05:41,765 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 16:33:24] 2025-11-27 20:05:41,765 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 16:33:24] 2025-11-27 20:05:41,765 | INFO     | [monitor] control thread has ended
[2025-11-27 16:33:24] 2025-11-27 20:05:42,133 [wrapper] ==== pilot stdout END ====
[2025-11-27 16:33:24] 2025-11-27 20:05:42,150 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 16:33:24] 2025-11-27 20:05:42,181 [wrapper] pilotpid: 1617011
[2025-11-27 16:33:24] 2025-11-27 20:05:42,202 [wrapper] Pilot exit status: 0
[2025-11-27 16:33:24] 2025-11-27 20:05:42,330 [wrapper] pandaids: 6896714964
[2025-11-27 16:33:24] 2025-11-27 20:05:42,468 [wrapper] cleanup supervisor_pilot 3113382 1617012
[2025-11-27 16:33:24] 2025-11-27 20:05:42,479 [wrapper] Test setup, not cleaning
[2025-11-27 16:33:24] 2025-11-27 20:05:42,494 [wrapper] apfmon messages muted
[2025-11-27 16:33:24] 2025-11-27 20:05:42,512 [wrapper] ==== wrapper stdout END ====
[2025-11-27 16:33:24] 2025-11-27 20:05:42,529 [wrapper] ==== wrapper stderr END ====
[2025-11-27 16:33:24]  *** Error codes and diagnostics ***
[2025-11-27 16:33:24]     "exeErrorCode": 0,
[2025-11-27 16:33:24]     "exeErrorDiag": "",
[2025-11-27 16:33:24]     "pilotErrorCode": 0,
[2025-11-27 16:33:24]     "pilotErrorDiag": "",
[2025-11-27 16:33:24]  *** Listing of results directory ***
[2025-11-27 16:33:24] total 1323468
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-27 16:33:24] -rwx------. 1 boincer umatlas     36292 Nov 25 01:57 runpilot2-wrapper.sh
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:57 queuedata.json
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas       100 Nov 26 11:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 16:33:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 11:36 run_atlas
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas       105 Nov 26 11:36 job.xml
[2025-11-27 16:33:24] -rw-r--r--. 2 boincer umatlas 410858736 Nov 26 11:36 EVNT.47483658._003071.pool.root.1
[2025-11-27 16:33:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 11:36 start_atlas.sh
[2025-11-27 16:33:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 11:36 shared
[2025-11-27 16:33:24] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 11:36 input.tar.gz
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas         0 Nov 26 11:36 boinc_lockfile
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 11:36 pandaJob.out
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas        57 Nov 26 11:36 setup.sh.local
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas    991545 Nov 26 11:37 agis_schedconf.cvmfs.json
[2025-11-27 16:33:24] drwx------. 5 boincer umatlas      4096 Nov 26 11:37 pilot3
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:31 boinc_task_state.xml
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas 910466843 Nov 27 15:01 HITS.47556173._000534.pool.root.1
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas      1058 Nov 27 15:04 memory_monitor_summary.json
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:04 agis_ddmendpoints.agis.ALL.json
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas   2682373 Nov 27 15:04 log.47556173._000534.job.log.tgz.1
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas      8620 Nov 27 15:05 heartbeat.json
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas        95 Nov 27 15:05 pilot_heartbeat.json
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas       823 Nov 27 15:05 pilotlog.txt
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas  12314078 Nov 27 15:05 log.47556173._000534.job.log.1
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas       353 Nov 27 15:05 output.list
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:05 runtime_log
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas  15011840 Nov 27 15:05 result.tar.gz
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 15:05 runtime_log.err
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas       660 Nov 27 15:05 InlMDmtA2h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmAEMKDm24JtPo.diag
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 16:30 init_data.xml
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 16:33 boinc_mmap_file
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas        29 Nov 27 16:33 wrapper_checkpoint.txt
[2025-11-27 16:33:24] -rw-r--r--. 1 boincer umatlas     21867 Nov 27 16:33 stderr.txt
[2025-11-27 16:33:24] HITS file was successfully produced:
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas 910466843 Nov 27 15:01 shared/HITS.pool.root.1
[2025-11-27 16:33:24]  *** Contents of shared directory: ***
[2025-11-27 16:33:24] total 1305624
[2025-11-27 16:33:24] -rw-r--r--. 2 boincer umatlas 410858736 Nov 26 11:36 ATLAS.root_0
[2025-11-27 16:33:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 11:36 start_atlas.sh
[2025-11-27 16:33:24] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 11:36 input.tar.gz
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas 910466843 Nov 27 15:01 HITS.pool.root.1
[2025-11-27 16:33:24] -rw-------. 1 boincer umatlas  15011840 Nov 27 15:05 result.tar.gz
16:33:26 (1613158): run_atlas exited; CPU time 253694.237046
16:33:26 (1613158): called boinc_finish(0)

</stderr_txt>
]]>

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