Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:16 (2288145): wrapper (7.7.26015): starting
00:10:16 (2288145): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:10:16] Arguments: --nthreads 8
[2025-11-26 00:10:16] Threads: 8
[2025-11-26 00:10:16] Checking for CVMFS
[2025-11-26 00:10:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:10:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:10:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:10:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:10:18] 2.13.3.0 13172 29613 390500 153309 0 203 23889081 32935936 40995 16776704 0 153824119 99.538 169366927 34968 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:10:18] CVMFS is ok
[2025-11-26 00:10:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:10:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:10:18] Further information can be found at the LHC@home message board.
[2025-11-26 00:10:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:10:18] Checking for apptainer binary...
[2025-11-26 00:10:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:10:18] Running /usr/bin/apptainer --version
[2025-11-26 00:10:19] apptainer version 1.4.4-1.el9
[2025-11-26 00:10:19] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:10:19] c6-6-8-3.aglt2.org
[2025-11-26 00:10:19] apptainer works
[2025-11-26 00:10:19] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:10:19] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:10:19] Starting ATLAS job with PandaID=6895339630
[2025-11-26 00:10:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:20:11 (2288145): BOINC client no longer exists - exiting
13:20:11 (2288145): timer handler: client dead, exiting
13:20:45 (1728674): wrapper (7.7.26015): starting
13:20:45 (1728674): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:20:45] Arguments: --nthreads 8
[2025-11-26 13:20:45] Threads: 8
[2025-11-26 13:20:45] This job has been restarted, cleaning up previous attempt
[2025-11-26 13:20:45] Checking for CVMFS
[2025-11-26 13:20:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:20:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:20:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:20:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:20:45] 2.13.3.0 13172 30403 374404 153331 3 439 24192179 32935937 35383 16776704 0 159168469 99.541 174462204 34908 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 13:20:45] CVMFS is ok
[2025-11-26 13:20:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:20:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:20:45] Further information can be found at the LHC@home message board.
[2025-11-26 13:20:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:20:45] Checking for apptainer binary...
[2025-11-26 13:20:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:20:45] Running /usr/bin/apptainer --version
[2025-11-26 13:20:45] apptainer version 1.4.4-1.el9
[2025-11-26 13:20:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:20:46] c6-6-8-3.aglt2.org
[2025-11-26 13:20:46] apptainer works
[2025-11-26 13:20:46] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:20:46] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:20:46] Starting ATLAS job with PandaID=6895339630
[2025-11-26 13:20:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:02:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:02:24] 2025-11-27 15:01:11,829 | INFO     | time since job start (74412s) is within the limit (172800.0s)
[2025-11-27 10:02:24] 2025-11-27 15:01:13,836 | INFO     | time since job start (74414s) is within the limit (172800.0s)
[2025-11-27 10:02:24] 2025-11-27 15:01:13,918 | INFO     | monitor loop #4050: job 0:6895339630 is in state 'finished'
[2025-11-27 10:02:24] 2025-11-27 15:01:13,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:02:24] 2025-11-27 15:01:15,851 | INFO     | time since job start (74416s) is within the limit (172800.0s)
[2025-11-27 10:02:24] 2025-11-27 15:01:16,423 | INFO     | monitor loop #4051: job 0:6895339630 is in state 'finished'
[2025-11-27 10:02:24] 2025-11-27 15:01:16,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:02:24] 2025-11-27 15:01:17,858 | INFO     | time since job start (74418s) is within the limit (172800.0s)
[2025-11-27 10:02:24] 2025-11-27 15:01:18,978 | INFO     | monitor loop #4052: job 0:6895339630 is in state 'finished'
[2025-11-27 10:02:24] 2025-11-27 15:01:18,978 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:02:24] 2025-11-27 15:01:20,202 | INFO     | PID=1750924 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:02:24] 2025-11-27 15:01:20,203 | INFO     | .. there are 55 such processes running
[2025-11-27 10:02:24] 2025-11-27 15:01:21,001 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 10:02:24] 2025-11-27 15:01:21,094 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2594.895697916667
[2025-11-27 10:02:24] 2025-11-27 15:01:21,204 | INFO     | time since job start (74422s) is within the limit (172800.0s)
[2025-11-27 10:02:24] 2025-11-27 15:01:21,220 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6895339630/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:02:24] 2025-11-27 15:01:21,223 | INFO     | extracted standard info from prmon json
[2025-11-27 10:02:24] 2025-11-27 15:01:21,223 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:02:24] 2025-11-27 15:01:21,224 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:02:24] 2025-11-27 15:01:21,364 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:02:24] 2025-11-27 15:01:21,366 | INFO     | sum of square deviations: 561680784471.4702
[2025-11-27 10:02:24] 2025-11-27 15:01:21,482 | INFO     | sum of deviations: 2429356181433.8916
[2025-11-27 10:02:24] 2025-11-27 15:01:21,483 | INFO     | mean x: 1764218441.4675963
[2025-11-27 10:02:24] 2025-11-27 15:01:21,483 | INFO     | mean y: 2922798.744052502
[2025-11-27 10:02:24] 2025-11-27 15:01:21,487 | INFO     | intersect: -7627594560.349737
[2025-11-27 10:02:24] 2025-11-27 15:01:21,489 | INFO     | chi2: 13.579383620495463
[2025-11-27 10:02:24] 2025-11-27 15:01:21,495 | INFO     | sum of square deviations: 554798363461.3531
[2025-11-27 10:02:24] 2025-11-27 15:01:21,504 | INFO     | monitor loop #4053: job 0:6895339630 is in state 'finished'
[2025-11-27 10:02:24] 2025-11-27 15:01:21,505 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:02:24] 2025-11-27 15:01:21,562 | INFO     | sum of deviations: 2842737096507.0874
[2025-11-27 10:02:24] 2025-11-27 15:01:21,563 | INFO     | mean x: 1764218288.9769359
[2025-11-27 10:02:24] 2025-11-27 15:01:21,563 | INFO     | mean y: 2931956.217462932
[2025-11-27 10:02:24] 2025-11-27 15:01:21,563 | INFO     | intersect: -9036764457.307291
[2025-11-27 10:02:24] 2025-11-27 15:01:21,565 | INFO     | chi2: 10.317186147651519
[2025-11-27 10:02:24] 2025-11-27 15:01:21,565 | INFO     | current chi2=10.317186147651519 (change=24.02316308319242 %)
[2025-11-27 10:02:24] 2025-11-27 15:01:21,565 | INFO     | right removable region: 1213
[2025-11-27 10:02:24] 2025-11-27 15:01:21,571 | INFO     | sum of square deviations: 554796825409.2667
[2025-11-27 10:02:24] 2025-11-27 15:01:21,632 | INFO     | sum of deviations: 2084436643473.8762
[2025-11-27 10:02:24] 2025-11-27 15:01:21,633 | INFO     | mean x: 1764218593.9752884
[2025-11-27 10:02:24] 2025-11-27 15:01:21,633 | INFO     | mean y: 2930432.7289950578
[2025-11-27 10:02:24] 2025-11-27 15:01:21,633 | INFO     | intersect: -6625445426.60884
[2025-11-27 10:02:24] 2025-11-27 15:01:21,634 | INFO     | chi2: 11.381779637442358
[2025-11-27 10:02:24] 2025-11-27 15:01:21,635 | INFO     | current chi2=11.381779637442358 (change=16.18338537646322 %)
[2025-11-27 10:02:24] 2025-11-27 15:01:21,635 | INFO     | left removable region: 10
[2025-11-27 10:02:24] 2025-11-27 15:01:21,640 | INFO     | sum of square deviations: 539852924682.598
[2025-11-27 10:02:24] 2025-11-27 15:01:21,693 | INFO     | sum of deviations: 2467654030407.9443
[2025-11-27 10:02:24] 2025-11-27 15:01:21,693 | INFO     | mean x: 1764218563.488778
[2025-11-27 10:02:24] 2025-11-27 15:01:21,693 | INFO     | mean y: 2943945.9592684954
[2025-11-27 10:02:24] 2025-11-27 15:01:21,693 | INFO     | intersect: -8061254374.857812
[2025-11-27 10:02:24] 2025-11-27 15:01:21,699 | INFO     | chi2: 7.392505887217613
[2025-11-27 10:02:24] 2025-11-27 15:01:21,700 | INFO     | current memory leak: 4.57 B/s (using 1203 data points, chi2=7.39)
[2025-11-27 10:02:24] 2025-11-27 15:01:21,701 | INFO     | could have reported an average CPU frequency of 2662 MHz (44 samples)
[2025-11-27 10:02:24] 2025-11-27 15:01:21,701 | INFO     | ..............................
[2025-11-27 10:02:24] 2025-11-27 15:01:21,701 | INFO     | . Timing measurements:
[2025-11-27 10:02:24] 2025-11-27 15:01:21,701 | INFO     | . get job = 0 s
[2025-11-27 10:02:24] 2025-11-27 15:01:21,701 | INFO     | . initial setup = 2 s
[2025-11-27 10:02:24] 2025-11-27 15:01:21,702 | INFO     | . payload setup = 7 s
[2025-11-27 10:02:24] 2025-11-27 15:01:21,702 | INFO     | . stage-in = 0 s
[2025-11-27 10:02:24] 2025-11-27 15:01:21,702 | INFO     | . payload execution = 74347 s
[2025-11-27 10:02:24] 2025-11-27 15:01:21,702 | INFO     | . stage-out = 8 s
[2025-11-27 10:02:24] 2025-11-27 15:01:21,702 | INFO     | . log creation = 1 s
[2025-11-27 10:02:24] 2025-11-27 15:01:21,702 | INFO     | ..............................
[2025-11-27 10:02:24] 2025-11-27 15:01:21,960 | INFO     | 
[2025-11-27 10:02:24] 2025-11-27 15:01:21,960 | INFO     | job summary report
[2025-11-27 10:02:24] 2025-11-27 15:01:21,960 | INFO     | --------------------------------------------------
[2025-11-27 10:02:24] 2025-11-27 15:01:21,960 | INFO     | PanDA job id: 6895339630
[2025-11-27 10:02:24] 2025-11-27 15:01:21,960 | INFO     | task id: 47556149
[2025-11-27 10:02:24] 2025-11-27 15:01:21,960 | INFO     | errors: (none)
[2025-11-27 10:02:24] 2025-11-27 15:01:21,960 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:02:24] 2025-11-27 15:01:21,960 | INFO     | pilot state: finished 
[2025-11-27 10:02:24] 2025-11-27 15:01:21,960 | INFO     | transexitcode: 0
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | exeerrorcode: 0
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | exeerrordiag: 
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | exitcode: 0
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | exitmsg: OK
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | cpuconsumptiontime: 250677 s
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | nevents: 1000
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | neventsw: 0
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | pid: 1790957
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | pgrp: 1790957
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | corecount: 8
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | event service: False
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | sizes: {0: 2284314, 5: 2284576, 11: 2284632, 74359: 2343263, 74360: 2343262, 74369: 2352314, 74371: 2352498, 74406: 2352744}
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | --------------------------------------------------
[2025-11-27 10:02:24] 2025-11-27 15:01:21,961 | INFO     | 
[2025-11-27 10:02:24] 2025-11-27 15:01:21,962 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-27 10:02:24] 2025-11-27 15:01:22,025 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,026 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,026 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,026 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,026 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,026 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,026 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,026 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,026 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,026 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,027 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,027 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,027 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,027 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,027 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,027 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,027 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,027 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:02:24] 2025-11-27 15:01:22,027 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,027 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:02:24] 2025-11-27 15:01:22,027 | INFO     | job 6895339630 has completed (purged errors)
[2025-11-27 10:02:24] 2025-11-27 15:01:22,028 | INFO     | overall cleanup function is called
[2025-11-27 10:02:24] 2025-11-27 15:01:23,057 | INFO     | --- collectZombieJob: --- 10, [1790957]
[2025-11-27 10:02:24] 2025-11-27 15:01:23,057 | INFO     | zombie collector waiting for pid 1790957
[2025-11-27 10:02:24] 2025-11-27 15:01:23,058 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:02:24] 2025-11-27 15:01:23,058 | INFO     | collected zombie processes
[2025-11-27 10:02:24] 2025-11-27 15:01:23,058 | INFO     | will attempt to kill all subprocesses of pid=1790957
[2025-11-27 10:02:24] 2025-11-27 15:01:25,074 | INFO     | process IDs to be killed: [1790957] (in reverse order)
[2025-11-27 10:02:24] 2025-11-27 15:01:25,379 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:02:24] 2025-11-27 15:01:25,380 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:02:24] 2025-11-27 15:01:25,509 | INFO     | did not find any defunct processes belonging to 1790957
[2025-11-27 10:02:24] 2025-11-27 15:01:25,584 | INFO     | did not find any defunct processes belonging to 1790957
[2025-11-27 10:02:24] 2025-11-27 15:01:25,589 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:02:24] 2025-11-27 15:01:25,591 | INFO     | ready for new job
[2025-11-27 10:02:24] 2025-11-27 15:01:25,592 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:02:24] 2025-11-27 15:01:25,611 | INFO     | ***************************************
[2025-11-27 10:02:24] 2025-11-27 15:01:25,612 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:02:24] 2025-11-27 15:01:25,613 | INFO     | ***************************************
[2025-11-27 10:02:24] 2025-11-27 15:01:25,614 | INFO     | 
[2025-11-27 10:02:24] 2025-11-27 15:01:25,620 | INFO     | architecture information:
[2025-11-27 10:02:24] 2025-11-27 15:01:25,691 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:02:24] 2025-11-27 15:01:25,759 | INFO     | cat /etc/os-release:
[2025-11-27 10:02:24] NAME="CentOS Linux"
[2025-11-27 10:02:24] VERSION="7 (Core)"
[2025-11-27 10:02:24] ID="centos"
[2025-11-27 10:02:24] ID_LIKE="rhel fedora"
[2025-11-27 10:02:24] VERSION_ID="7"
[2025-11-27 10:02:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:02:24] ANSI_COLOR="0;31"
[2025-11-27 10:02:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:02:24] HOME_URL="https://www.centos.org/"
[2025-11-27 10:02:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:02:24] 
[2025-11-27 10:02:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:02:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:02:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:02:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:02:24] 
[2025-11-27 10:02:24] 2025-11-27 15:01:25,759 | INFO     | ***************************************
[2025-11-27 10:02:24] 2025-11-27 15:01:26,262 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-27 10:02:24] 2025-11-27 15:01:26,356 | INFO     | sufficient remaining disk space (84331724800 B)
[2025-11-27 10:02:24] 2025-11-27 15:01:26,356 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:02:24] 2025-11-27 15:01:26,357 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:02:24] 2025-11-27 15:01:26,357 | INFO     | update_server=False
[2025-11-27 10:02:24] 2025-11-27 15:01:26,357 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:02:24] 2025-11-27 15:01:26,358 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:02:24] 2025-11-27 15:01:26,476 | INFO     | all job control threads have been joined
[2025-11-27 10:02:24] 2025-11-27 15:01:26,635 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 10:02:24] 2025-11-27 15:01:26,636 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 10:02:24] 2025-11-27 15:01:26,636 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:02:24] 2025-11-27 15:01:26,636 | INFO     | will abort loop
[2025-11-27 10:02:24] 2025-11-27 15:01:26,678 | INFO     | all payload control threads have been joined
[2025-11-27 10:02:24] 2025-11-27 15:01:26,977 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:02:24] 2025-11-27 15:01:27,330 | INFO     | all data control threads have been joined
[2025-11-27 10:02:24] 2025-11-27 15:01:27,366 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:27,481 | INFO     | [job] control thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:27,546 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:27,547 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:27,572 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:27,651 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:27,661 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:27,684 | INFO     | [payload] control thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:27,983 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:28,009 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:28,016 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:28,017 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:28,336 | INFO     | [data] control thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:28,389 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:28,460 | INFO     | [job] validate thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:29,717 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:02:24] 2025-11-27 15:01:33,731 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:02:24] 2025-11-27 15:01:56,284 | INFO     | PID=1750924 has CPU usage=5.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:02:24] 2025-11-27 15:01:56,284 | INFO     | .. there are 55 such processes running
[2025-11-27 10:02:24] 2025-11-27 15:01:56,285 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:02:24] 2025-11-27 15:01:56,285 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:02:24] 2025-11-27 15:01:56,286 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:02:24] 2025-11-27 15:02:17,221 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:02:24] 2025-11-27 15:02:17,395 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140048145205056)>', '<ExcThread(monitor, started 140047651161856)>']
[2025-11-27 10:02:24] 2025-11-27 15:02:17,491 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:02:24] 2025-11-27 15:02:17,492 | INFO     | [monitor] control thread has ended
[2025-11-27 10:02:24] 2025-11-27 15:02:22,421 | INFO     | all workflow threads have been joined
[2025-11-27 10:02:24] 2025-11-27 15:02:22,421 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:02:24] 2025-11-27 15:02:22,422 | INFO     | traces error code: 0
[2025-11-27 10:02:24] 2025-11-27 15:02:22,422 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:02:24] 2025-11-27 15:02:23,555 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:02:24] 2025-11-27 15:02:23,580 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:02:24] 2025-11-27 15:02:23,607 [wrapper] pilotpid: 1750924
[2025-11-27 10:02:24] 2025-11-27 15:02:23,635 [wrapper] Pilot exit status: 0
[2025-11-27 10:02:24] 2025-11-27 15:02:23,779 [wrapper] pandaids: 6895339630 6895339630
[2025-11-27 10:02:24] 2025-11-27 15:02:24,121 [wrapper] cleanup supervisor_pilot 3465116 1750926
[2025-11-27 10:02:24] 2025-11-27 15:02:24,134 [wrapper] Test setup, not cleaning
[2025-11-27 10:02:24] 2025-11-27 15:02:24,154 [wrapper] apfmon messages muted
[2025-11-27 10:02:24] 2025-11-27 15:02:24,174 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:02:24] 2025-11-27 15:02:24,195 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:02:24]  *** Error codes and diagnostics ***
[2025-11-27 10:02:24]     "exeErrorCode": 0,
[2025-11-27 10:02:24]     "exeErrorDiag": "",
[2025-11-27 10:02:24]     "pilotErrorCode": 0,
[2025-11-27 10:02:24]     "pilotErrorDiag": "",
[2025-11-27 10:02:24]  *** Listing of results directory ***
[2025-11-27 10:02:24] total 1722356
[2025-11-27 10:02:24] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 10:02:24] -rwx------. 1 boincer umatlas     36292 Nov 22 05:57 runpilot2-wrapper.sh
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 22 05:57 queuedata.json
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 22 05:57 pilot3.tar.gz
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:02:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:10 run_atlas
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:10 job.xml
[2025-11-27 10:02:24] -rw-r--r--. 3 boincer umatlas 410917963 Nov 26 00:10 EVNT.47483658._001085.pool.root.1
[2025-11-27 10:02:24] -rw-r--r--. 3 boincer umatlas 410917963 Nov 26 00:10 ATLAS.root_0
[2025-11-27 10:02:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 10:02:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:10 shared
[2025-11-27 10:02:24] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 00:10 input.tar.gz
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:10 boinc_lockfile
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 13:20 pandaJob.out
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas        57 Nov 26 13:20 setup.sh.local
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas    991522 Nov 26 13:20 agis_schedconf.cvmfs.json
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas       533 Nov 27 09:38 boinc_task_state.xml
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas 915687763 Nov 27 09:59 HITS.47556149._000718.pool.root.1
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas      1070 Nov 27 10:00 memory_monitor_summary.json
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:00 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas   2263233 Nov 27 10:00 log.47556149._000718.job.log.tgz.1
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas      8639 Nov 27 10:01 heartbeat.json
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 10:01 init_data.xml
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas        95 Nov 27 10:01 pilot_heartbeat.json
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:02 boinc_mmap_file
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas        29 Nov 27 10:02 wrapper_checkpoint.txt
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas      5011 Nov 27 10:02 pilotlog.txt
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas   8855756 Nov 27 10:02 log.47556149._000718.job.log.1
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas       353 Nov 27 10:02 output.list
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:02 runtime_log
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas  11141120 Nov 27 10:02 result.tar.gz
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas      9446 Nov 27 10:02 runtime_log.err
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas       789 Nov 27 10:02 6oPMDmWU0g8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmF5HKDmmmxtBn.diag
[2025-11-27 10:02:24] -rw-r--r--. 1 boincer umatlas     24115 Nov 27 10:02 stderr.txt
[2025-11-27 10:02:24] HITS file was successfully produced:
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas 915687763 Nov 27 09:59 shared/HITS.pool.root.1
[2025-11-27 10:02:24]  *** Contents of shared directory: ***
[2025-11-27 10:02:24] total 1307000
[2025-11-27 10:02:24] -rw-r--r--. 3 boincer umatlas 410917963 Nov 26 00:10 ATLAS.root_0
[2025-11-27 10:02:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-27 10:02:24] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 00:10 input.tar.gz
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas 915687763 Nov 27 09:59 HITS.pool.root.1
[2025-11-27 10:02:24] -rw-------. 1 boincer umatlas  11141120 Nov 27 10:02 result.tar.gz
10:02:26 (1728674): run_atlas exited; CPU time 253667.065497
10:02:26 (1728674): called boinc_finish(0)

</stderr_txt>
]]>

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