Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:06 (3578711): wrapper (7.7.26015): starting
00:04:06 (3578711): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:06] Arguments: --nthreads 9
[2025-11-26 00:04:06] Threads: 9
[2025-11-26 00:04:06] Checking for CVMFS
[2025-11-26 00:04:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:08] 2.13.3.0 11836 28126 351440 153309 0 399 18142826 32935937 36148 16776704 0 120497767 99.536 135261822 35744 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:04:08] CVMFS is ok
[2025-11-26 00:04:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:08] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:08] Checking for apptainer binary...
[2025-11-26 00:04:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:08] Running /usr/bin/apptainer --version
[2025-11-26 00:04:09] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:09] c6-2-11-1.aglt2.org
[2025-11-26 00:04:09] apptainer works
[2025-11-26 00:04:09] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:09] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:09] Starting ATLAS job with PandaID=6891106649
[2025-11-26 00:04:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:53:21]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:53:21] 2025-11-27 22:52:29,861 | INFO     | monitor loop #7571: job 0:6891106649 is in state 'finished'
[2025-11-27 17:53:21] 2025-11-27 22:52:29,861 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:53:21] 2025-11-27 22:52:30,487 | INFO     | time since job start (150431s) is within the limit (172800.0s)
[2025-11-27 17:53:21] 2025-11-27 22:52:32,367 | INFO     | monitor loop #7572: job 0:6891106649 is in state 'finished'
[2025-11-27 17:53:21] 2025-11-27 22:52:32,367 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:53:21] 2025-11-27 22:52:32,493 | INFO     | time since job start (150433s) is within the limit (172800.0s)
[2025-11-27 17:53:21] 2025-11-27 22:52:34,524 | INFO     | time since job start (150435s) is within the limit (172800.0s)
[2025-11-27 17:53:21] 2025-11-27 22:52:34,876 | INFO     | monitor loop #7573: job 0:6891106649 is in state 'finished'
[2025-11-27 17:53:21] 2025-11-27 22:52:34,876 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:53:21] 2025-11-27 22:52:36,535 | INFO     | time since job start (150437s) is within the limit (172800.0s)
[2025-11-27 17:53:21] 2025-11-27 22:52:37,381 | INFO     | monitor loop #7574: job 0:6891106649 is in state 'finished'
[2025-11-27 17:53:21] 2025-11-27 22:52:37,381 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:53:21] 2025-11-27 22:52:38,536 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:53:21] 2025-11-27 22:52:38,542 | INFO     | time since job start (150439s) is within the limit (172800.0s)
[2025-11-27 17:53:21] 2025-11-27 22:52:38,601 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2647.992979166667
[2025-11-27 17:53:21] 2025-11-27 22:52:38,648 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6891106649/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:53:21] 2025-11-27 22:52:38,648 | INFO     | extracted standard info from prmon json
[2025-11-27 17:53:21] 2025-11-27 22:52:38,648 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:53:21] 2025-11-27 22:52:38,649 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:53:21] 2025-11-27 22:52:38,700 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:53:21] 2025-11-27 22:52:38,709 | INFO     | sum of square deviations: 4633132926516.053
[2025-11-27 17:53:21] 2025-11-27 22:52:39,255 | INFO     | sum of deviations: 17761194241458.883
[2025-11-27 17:53:21] 2025-11-27 22:52:39,256 | INFO     | mean x: 1764208782.1084044
[2025-11-27 17:53:21] 2025-11-27 22:52:39,256 | INFO     | mean y: 3029063.434835566
[2025-11-27 17:53:21] 2025-11-27 22:52:39,256 | INFO     | intersect: -6760095448.314788
[2025-11-27 17:53:21] 2025-11-27 22:52:39,297 | INFO     | chi2: 28.882545785527302
[2025-11-27 17:53:21] 2025-11-27 22:52:39,301 | INFO     | sum of square deviations: 4604975554481.277
[2025-11-27 17:53:21] 2025-11-27 22:52:39,697 | INFO     | sum of deviations: 18688273119898.05
[2025-11-27 17:53:21] 2025-11-27 22:52:39,698 | INFO     | mean x: 1764208629.6126933
[2025-11-27 17:53:21] 2025-11-27 22:52:39,698 | INFO     | mean y: 3034083.734336859
[2025-11-27 17:53:21] 2025-11-27 22:52:39,698 | INFO     | intersect: -7156615803.787583
[2025-11-27 17:53:21] 2025-11-27 22:52:39,712 | INFO     | chi2: 25.16898280955529
[2025-11-27 17:53:21] 2025-11-27 22:52:39,712 | INFO     | current chi2=25.16898280955529 (change=12.857464170740919 %)
[2025-11-27 17:53:21] 2025-11-27 22:52:39,713 | INFO     | right removable region: 2457
[2025-11-27 17:53:21] 2025-11-27 22:52:39,730 | INFO     | sum of square deviations: 4604972536875.508
[2025-11-27 17:53:21] 2025-11-27 22:52:39,971 | INFO     | monitor loop #7575: job 0:6891106649 is in state 'finished'
[2025-11-27 17:53:21] 2025-11-27 22:52:39,971 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:53:21] 2025-11-27 22:52:40,072 | INFO     | sum of deviations: 16726522267423.527
[2025-11-27 17:53:21] 2025-11-27 22:52:40,072 | INFO     | mean x: 1764208934.6122863
[2025-11-27 17:53:21] 2025-11-27 22:52:40,072 | INFO     | mean y: 3034666.438161107
[2025-11-27 17:53:21] 2025-11-27 22:52:40,072 | INFO     | intersect: -6405055673.488595
[2025-11-27 17:53:21] 2025-11-27 22:52:40,080 | INFO     | chi2: 24.857606384813955
[2025-11-27 17:53:21] 2025-11-27 22:52:40,080 | INFO     | current chi2=24.857606384813955 (change=13.93554235350748 %)
[2025-11-27 17:53:21] 2025-11-27 22:52:40,080 | INFO     | left removable region: 10
[2025-11-27 17:53:21] 2025-11-27 22:52:40,087 | INFO     | sum of square deviations: 4543425256751.709
[2025-11-27 17:53:21] 2025-11-27 22:52:40,325 | INFO     | sum of deviations: 16901192848819.67
[2025-11-27 17:53:21] 2025-11-27 22:52:40,326 | INFO     | mean x: 1764208904.1217818
[2025-11-27 17:53:21] 2025-11-27 22:52:40,326 | INFO     | mean y: 3045642.8132407027
[2025-11-27 17:53:21] 2025-11-27 22:52:40,326 | INFO     | intersect: -6559675922.784753
[2025-11-27 17:53:21] 2025-11-27 22:52:40,334 | INFO     | chi2: 17.427796182483515
[2025-11-27 17:53:21] 2025-11-27 22:52:40,334 | INFO     | current memory leak: 3.72 B/s (using 2447 data points, chi2=17.43)
[2025-11-27 17:53:21] 2025-11-27 22:52:40,347 | INFO     | could have reported an average CPU frequency of 2657 MHz (85 samples)
[2025-11-27 17:53:21] 2025-11-27 22:52:40,347 | INFO     | ..............................
[2025-11-27 17:53:21] 2025-11-27 22:52:40,347 | INFO     | . Timing measurements:
[2025-11-27 17:53:21] 2025-11-27 22:52:40,347 | INFO     | . get job = 0 s
[2025-11-27 17:53:21] 2025-11-27 22:52:40,347 | INFO     | . initial setup = 5 s
[2025-11-27 17:53:21] 2025-11-27 22:52:40,347 | INFO     | . payload setup = 53 s
[2025-11-27 17:53:21] 2025-11-27 22:52:40,347 | INFO     | . stage-in = 0 s
[2025-11-27 17:53:21] 2025-11-27 22:52:40,347 | INFO     | . payload execution = 150263 s
[2025-11-27 17:53:21] 2025-11-27 22:52:40,347 | INFO     | . stage-out = 9 s
[2025-11-27 17:53:21] 2025-11-27 22:52:40,347 | INFO     | . log creation = 2 s
[2025-11-27 17:53:21] 2025-11-27 22:52:40,347 | INFO     | ..............................
[2025-11-27 17:53:21] 2025-11-27 22:52:40,567 | INFO     | 
[2025-11-27 17:53:21] 2025-11-27 22:52:40,567 | INFO     | job summary report
[2025-11-27 17:53:21] 2025-11-27 22:52:40,567 | INFO     | --------------------------------------------------
[2025-11-27 17:53:21] 2025-11-27 22:52:40,567 | INFO     | PanDA job id: 6891106649
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | task id: 47483661
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | errors: (none)
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | pilot state: finished 
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | transexitcode: 0
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | exeerrorcode: 0
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | exeerrordiag: 
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | exitcode: 0
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | exitmsg: OK
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | cpuconsumptiontime: 272397 s
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | nevents: 1000
[2025-11-27 17:53:21] 2025-11-27 22:52:40,568 | INFO     | neventsw: 0
[2025-11-27 17:53:21] 2025-11-27 22:52:40,569 | INFO     | pid: 3644477
[2025-11-27 17:53:21] 2025-11-27 22:52:40,569 | INFO     | pgrp: 3644477
[2025-11-27 17:53:21] 2025-11-27 22:52:40,569 | INFO     | corecount: 9
[2025-11-27 17:53:21] 2025-11-27 22:52:40,569 | INFO     | event service: False
[2025-11-27 17:53:21] 2025-11-27 22:52:40,569 | INFO     | sizes: {0: 2283476, 1: 2284161, 2: 2284360, 3: 2284360, 14: 2284388, 25: 2284416, 33: 2284834, 36: 2284890, 150323: 2375646, 150334: 2384668, 150336: 2384724, 1503
[2025-11-27 17:53:21] 2025-11-27 22:52:40,569 | INFO     | --------------------------------------------------
[2025-11-27 17:53:21] 2025-11-27 22:52:40,569 | INFO     | 
[2025-11-27 17:53:21] 2025-11-27 22:52:40,569 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 17:53:21] 2025-11-27 22:52:40,567 | INFO     | time since job start (150441s) is within the limit (172800.0s)
[2025-11-27 17:53:21] 2025-11-27 22:52:40,714 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,714 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,715 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,716 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,716 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,716 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:53:21] 2025-11-27 22:52:40,716 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,716 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:53:21] 2025-11-27 22:52:40,716 | INFO     | job 6891106649 has completed (purged errors)
[2025-11-27 17:53:21] 2025-11-27 22:52:40,716 | INFO     | overall cleanup function is called
[2025-11-27 17:53:21] 2025-11-27 22:52:41,774 | INFO     | --- collectZombieJob: --- 10, [3644477]
[2025-11-27 17:53:21] 2025-11-27 22:52:41,776 | INFO     | zombie collector waiting for pid 3644477
[2025-11-27 17:53:21] 2025-11-27 22:52:41,776 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:53:21] 2025-11-27 22:52:41,776 | INFO     | collected zombie processes
[2025-11-27 17:53:21] 2025-11-27 22:52:41,776 | INFO     | will attempt to kill all subprocesses of pid=3644477
[2025-11-27 17:53:21] 2025-11-27 22:52:44,351 | INFO     | process IDs to be killed: [3644477] (in reverse order)
[2025-11-27 17:53:21] 2025-11-27 22:52:44,900 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:53:21] 2025-11-27 22:52:44,900 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:53:21] 2025-11-27 22:52:44,926 | INFO     | did not find any defunct processes belonging to 3644477
[2025-11-27 17:53:21] 2025-11-27 22:52:44,951 | INFO     | did not find any defunct processes belonging to 3644477
[2025-11-27 17:53:21] 2025-11-27 22:52:44,953 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:53:21] 2025-11-27 22:52:44,953 | INFO     | ready for new job
[2025-11-27 17:53:21] 2025-11-27 22:52:44,953 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:53:21] 2025-11-27 22:52:44,962 | INFO     | ***************************************
[2025-11-27 17:53:21] 2025-11-27 22:52:44,962 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:53:21] 2025-11-27 22:52:44,963 | INFO     | ***************************************
[2025-11-27 17:53:21] 2025-11-27 22:52:44,963 | INFO     | 
[2025-11-27 17:53:21] 2025-11-27 22:52:44,968 | INFO     | architecture information:
[2025-11-27 17:53:21] 2025-11-27 22:52:44,971 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:53:21] 2025-11-27 22:52:45,022 | INFO     | cat /etc/os-release:
[2025-11-27 17:53:21] NAME="CentOS Linux"
[2025-11-27 17:53:21] VERSION="7 (Core)"
[2025-11-27 17:53:21] ID="centos"
[2025-11-27 17:53:21] ID_LIKE="rhel fedora"
[2025-11-27 17:53:21] VERSION_ID="7"
[2025-11-27 17:53:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:53:21] ANSI_COLOR="0;31"
[2025-11-27 17:53:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:53:21] HOME_URL="https://www.centos.org/"
[2025-11-27 17:53:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:53:21] 
[2025-11-27 17:53:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:53:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:53:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:53:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:53:21] 
[2025-11-27 17:53:21] 2025-11-27 22:52:45,022 | INFO     | ***************************************
[2025-11-27 17:53:21] 2025-11-27 22:52:45,526 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 17:53:21] 2025-11-27 22:52:45,649 | INFO     | sufficient remaining disk space (81651564544 B)
[2025-11-27 17:53:21] 2025-11-27 22:52:45,650 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:53:21] 2025-11-27 22:52:45,650 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:53:21] 2025-11-27 22:52:45,650 | INFO     | update_server=False
[2025-11-27 17:53:21] 2025-11-27 22:52:45,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:53:21] 2025-11-27 22:52:45,651 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:53:21] 2025-11-27 22:52:45,653 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:53:21] 2025-11-27 22:52:46,074 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:53:21] 2025-11-27 22:52:46,074 | INFO     | aborting loop
[2025-11-27 17:53:21] 2025-11-27 22:52:46,463 | INFO     | all job control threads have been joined
[2025-11-27 17:53:21] 2025-11-27 22:52:46,656 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:46,657 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:46,684 | INFO     | all data control threads have been joined
[2025-11-27 17:53:21] 2025-11-27 22:52:46,737 | INFO     | [job] validate thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:46,741 | INFO     | all payload control threads have been joined
[2025-11-27 17:53:21] 2025-11-27 22:52:47,012 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:47,080 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:47,104 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:47,123 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:47,157 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:47,478 | INFO     | [job] control thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:47,660 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:47,689 | INFO     | [data] control thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:47,767 | INFO     | [payload] control thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:47,873 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:47,898 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:48,005 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:52:48,519 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:53:21] 2025-11-27 22:52:52,538 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:53:21] 2025-11-27 22:53:01,909 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:53:21] 2025-11-27 22:53:02,000 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140201015277376)>', '<ExcThread(monitor, started 140200650979072)>']
[2025-11-27 17:53:21] 2025-11-27 22:53:07,037 | INFO     | all workflow threads have been joined
[2025-11-27 17:53:21] 2025-11-27 22:53:07,037 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:53:21] 2025-11-27 22:53:07,038 | INFO     | traces error code: 0
[2025-11-27 17:53:21] 2025-11-27 22:53:07,038 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:53:21] 2025-11-27 22:53:18,552 | INFO     | PID=3602569 has CPU usage=4.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:53:21] 2025-11-27 22:53:18,553 | INFO     | .. there are 63 such processes running
[2025-11-27 17:53:21] 2025-11-27 22:53:18,554 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:53:21] 2025-11-27 22:53:18,554 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:53:21] 2025-11-27 22:53:18,554 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:53:21] 2025-11-27 22:53:18,554 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:53:21] 2025-11-27 22:53:18,554 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 17:53:21] 2025-11-27 22:53:18,555 | INFO     | [monitor] control thread has ended
[2025-11-27 17:53:21] 2025-11-27 22:53:20,323 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:53:21] 2025-11-27 22:53:20,336 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:53:21] 2025-11-27 22:53:20,357 [wrapper] pilotpid: 3602569
[2025-11-27 17:53:21] 2025-11-27 22:53:20,366 [wrapper] Pilot exit status: 0
[2025-11-27 17:53:21] 2025-11-27 22:53:20,416 [wrapper] pandaids: 6891106649
[2025-11-27 17:53:21] 2025-11-27 22:53:20,687 [wrapper] cleanup supervisor_pilot  436809 3602570
[2025-11-27 17:53:21] 2025-11-27 22:53:20,703 [wrapper] Test setup, not cleaning
[2025-11-27 17:53:21] 2025-11-27 22:53:20,716 [wrapper] apfmon messages muted
[2025-11-27 17:53:21] 2025-11-27 22:53:20,726 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:53:21] 2025-11-27 22:53:20,746 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:53:21]  *** Error codes and diagnostics ***
[2025-11-27 17:53:21]     "exeErrorCode": 0,
[2025-11-27 17:53:21]     "exeErrorDiag": "",
[2025-11-27 17:53:21]     "pilotErrorCode": 0,
[2025-11-27 17:53:21]     "pilotErrorDiag": "",
[2025-11-27 17:53:21]  *** Listing of results directory ***
[2025-11-27 17:53:21] total 1320788
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 01:54 pilot3.tar.gz
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 02:00 queuedata.json
[2025-11-27 17:53:21] -rwx------. 1 boincer umatlas     36292 Nov 18 02:01 runpilot2-wrapper.sh
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:53:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-27 17:53:21] -rw-r--r--. 2 boincer umatlas 409245525 Nov 26 00:04 EVNT.47483658._000272.pool.root.1
[2025-11-27 17:53:21] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 00:04 input.tar.gz
[2025-11-27 17:53:21] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:04 start_atlas.sh
[2025-11-27 17:53:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:04 pandaJob.out
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas    991877 Nov 26 00:05 agis_schedconf.cvmfs.json
[2025-11-27 17:53:21] drwx------. 5 boincer umatlas      4096 Nov 26 00:05 pilot3
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas       534 Nov 27 17:00 boinc_task_state.xml
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 17:46 init_data.xml
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas 898900236 Nov 27 17:49 HITS.47483661._002415.pool.root.1
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas      1066 Nov 27 17:51 memory_monitor_summary.json
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:51 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas   3186340 Nov 27 17:51 log.47483661._002415.job.log.tgz.1
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas      8646 Nov 27 17:52 heartbeat.json
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas        30 Nov 27 17:53 wrapper_checkpoint.txt
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:53 boinc_mmap_file
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas        95 Nov 27 17:53 pilot_heartbeat.json
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas       893 Nov 27 17:53 pilotlog.txt
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas  17024678 Nov 27 17:53 log.47483661._002415.job.log.1
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas       353 Nov 27 17:53 output.list
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:53 runtime_log
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas  20234240 Nov 27 17:53 result.tar.gz
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas       667 Nov 27 17:53 wtKNDmRtUf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmkRKODmxomYNm.diag
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas      8710 Nov 27 17:53 runtime_log.err
[2025-11-27 17:53:21] -rw-r--r--. 1 boincer umatlas     21796 Nov 27 17:53 stderr.txt
[2025-11-27 17:53:21] HITS file was successfully produced:
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas 898900236 Nov 27 17:49 shared/HITS.pool.root.1
[2025-11-27 17:53:21]  *** Contents of shared directory: ***
[2025-11-27 17:53:21] total 1297856
[2025-11-27 17:53:21] -rw-r--r--. 2 boincer umatlas 409245525 Nov 26 00:04 ATLAS.root_0
[2025-11-27 17:53:21] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 00:04 input.tar.gz
[2025-11-27 17:53:21] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:04 start_atlas.sh
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas 898900236 Nov 27 17:49 HITS.pool.root.1
[2025-11-27 17:53:21] -rw-------. 1 boincer umatlas  20234240 Nov 27 17:53 result.tar.gz
17:53:23 (3578711): run_atlas exited; CPU time 279717.980733
17:53:23 (3578711): called boinc_finish(0)

</stderr_txt>
]]>

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