Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:30 (3760647): wrapper (7.7.26015): starting
00:02:30 (3760647): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:02:30] Arguments: --nthreads 9
[2025-11-26 00:02:30] Threads: 9
[2025-11-26 00:02:30] Checking for CVMFS
[2025-11-26 00:02:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:02:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:02:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:02:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:02:33] 2.13.2.0 8058 35393 292060 153309 2 499 29621334 40960001 13288 16776704 0 37390300 99.720 25633399 35358 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:02:33] CVMFS is ok
[2025-11-26 00:02:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:02:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:02:33] Further information can be found at the LHC@home message board.
[2025-11-26 00:02:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:02:33] Checking for apptainer binary...
[2025-11-26 00:02:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:02:33] Running /usr/bin/apptainer --version
[2025-11-26 00:02:33] apptainer version 1.4.4-1.el9
[2025-11-26 00:02:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:02:35] c-210-33-3.aglt2.org
[2025-11-26 00:02:35] apptainer works
[2025-11-26 00:02:35] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:02:35] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:02:35] Starting ATLAS job with PandaID=6896715500
[2025-11-26 00:02:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:36:22]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:36:22] 2025-11-27 00:35:25,123 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-26 19:36:22] 2025-11-27 00:35:25,228 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:36:22] 2025-11-27 00:35:25,228 | INFO     | job 6896715500 has state=finished
[2025-11-26 19:36:22] 2025-11-27 00:35:25,228 | INFO     | preparing for final server update for job 6896715500 in state='finished'
[2025-11-26 19:36:22] 2025-11-27 00:35:25,229 | INFO     | this job has now completed (state=finished)
[2025-11-26 19:36:22] 2025-11-27 00:35:25,229 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 19:36:22] 2025-11-27 00:35:25,229 | INFO     | log transfer has been attempted: DONE
[2025-11-26 19:36:22] 2025-11-27 00:35:25,229 | INFO     | job 6896715500 has finished - writing final server update
[2025-11-26 19:36:22] 2025-11-27 00:35:25,229 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 19:36:22] 2025-11-27 00:35:25,230 | INFO     | executing command: lscpu
[2025-11-26 19:36:22] 2025-11-27 00:35:25,277 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 19:36:22] 2025-11-27 00:35:26,990 | INFO     | time since job start (70272s) is within the limit (172800.0s)
[2025-11-26 19:36:22] 2025-11-27 00:35:28,087 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 19:36:22] 2025-11-27 00:35:28,101 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3043.0675535714295
[2025-11-26 19:36:22] 2025-11-27 00:35:28,111 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896715500/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:36:22] 2025-11-27 00:35:28,112 | INFO     | extracted standard info from prmon json
[2025-11-26 19:36:22] 2025-11-27 00:35:28,113 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:36:22] 2025-11-27 00:35:28,113 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:36:22] 2025-11-27 00:35:28,127 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:36:22] 2025-11-27 00:35:28,128 | INFO     | sum of square deviations: 470307273940.5396
[2025-11-26 19:36:22] 2025-11-27 00:35:28,146 | INFO     | sum of deviations: 5943918549276.235
[2025-11-26 19:36:22] 2025-11-27 00:35:28,146 | INFO     | mean x: 1764168676.9799826
[2025-11-26 19:36:22] 2025-11-27 00:35:28,147 | INFO     | mean y: 3010790.227154047
[2025-11-26 19:36:22] 2025-11-27 00:35:28,147 | INFO     | intersect: -22293210221.398483
[2025-11-26 19:36:22] 2025-11-27 00:35:28,148 | INFO     | chi2: 20.071158694907922
[2025-11-26 19:36:22] 2025-11-27 00:35:28,149 | INFO     | sum of square deviations: 464194417535.944
[2025-11-26 19:36:22] 2025-11-27 00:35:28,167 | INFO     | sum of deviations: 6262410684589.6045
[2025-11-26 19:36:22] 2025-11-27 00:35:28,167 | INFO     | mean x: 1764168524.493007
[2025-11-26 19:36:22] 2025-11-27 00:35:28,167 | INFO     | mean y: 3018731.1993006994
[2025-11-26 19:36:22] 2025-11-27 00:35:28,167 | INFO     | intersect: -23797241245.744972
[2025-11-26 19:36:22] 2025-11-27 00:35:28,169 | INFO     | chi2: 17.912057316501876
[2025-11-26 19:36:22] 2025-11-27 00:35:28,169 | INFO     | current chi2=17.912057316501876 (change=10.757233357702525 %)
[2025-11-26 19:36:22] 2025-11-27 00:35:28,169 | INFO     | right removable region: 1143
[2025-11-26 19:36:22] 2025-11-27 00:35:28,170 | INFO     | sum of square deviations: 464192328895.9435
[2025-11-26 19:36:22] 2025-11-27 00:35:28,188 | INFO     | sum of deviations: 5441612086304.25
[2025-11-26 19:36:22] 2025-11-27 00:35:28,189 | INFO     | mean x: 1764168829.493007
[2025-11-26 19:36:22] 2025-11-27 00:35:28,189 | INFO     | mean y: 3023317.1555944057
[2025-11-26 19:36:22] 2025-11-27 00:35:28,189 | INFO     | intersect: -20677892387.94291
[2025-11-26 19:36:22] 2025-11-27 00:35:28,190 | INFO     | chi2: 15.300958982711888
[2025-11-26 19:36:22] 2025-11-27 00:35:28,190 | INFO     | current chi2=15.300958982711888 (change=23.766439121455598 %)
[2025-11-26 19:36:22] 2025-11-27 00:35:28,190 | INFO     | left removable region: 10
[2025-11-26 19:36:22] 2025-11-27 00:35:28,191 | INFO     | sum of square deviations: 450928998273.4918
[2025-11-26 19:36:22] 2025-11-27 00:35:28,211 | INFO     | sum of deviations: 5363803414570.443
[2025-11-26 19:36:22] 2025-11-27 00:35:28,211 | INFO     | mean x: 1764168799.0211828
[2025-11-26 19:36:22] 2025-11-27 00:35:28,211 | INFO     | mean y: 3043327.5233892323
[2025-11-26 19:36:22] 2025-11-27 00:35:28,212 | INFO     | intersect: -20981756195.902443
[2025-11-26 19:36:22] 2025-11-27 00:35:28,213 | INFO     | chi2: 9.53860944659662
[2025-11-26 19:36:22] 2025-11-27 00:35:28,213 | INFO     | current memory leak: 11.90 B/s (using 1133 data points, chi2=9.54)
[2025-11-26 19:36:22] 2025-11-27 00:35:28,215 | INFO     | could have reported an average CPU frequency of 2856 MHz (42 samples)
[2025-11-26 19:36:22] 2025-11-27 00:35:28,215 | INFO     | ..............................
[2025-11-26 19:36:22] 2025-11-27 00:35:28,215 | INFO     | . Timing measurements:
[2025-11-26 19:36:22] 2025-11-27 00:35:28,215 | INFO     | . get job = 0 s
[2025-11-26 19:36:22] 2025-11-27 00:35:28,215 | INFO     | . initial setup = 10 s
[2025-11-26 19:36:22] 2025-11-27 00:35:28,215 | INFO     | . payload setup = 75 s
[2025-11-26 19:36:22] 2025-11-27 00:35:28,215 | INFO     | . stage-in = 0 s
[2025-11-26 19:36:22] 2025-11-27 00:35:28,216 | INFO     | . payload execution = 70097 s
[2025-11-26 19:36:22] 2025-11-27 00:35:28,216 | INFO     | . stage-out = 3 s
[2025-11-26 19:36:22] 2025-11-27 00:35:28,216 | INFO     | . log creation = 0 s
[2025-11-26 19:36:22] 2025-11-27 00:35:28,216 | INFO     | ..............................
[2025-11-26 19:36:22] 2025-11-27 00:35:28,306 | INFO     | 
[2025-11-26 19:36:22] 2025-11-27 00:35:28,307 | INFO     | job summary report
[2025-11-26 19:36:22] 2025-11-27 00:35:28,307 | INFO     | --------------------------------------------------
[2025-11-26 19:36:22] 2025-11-27 00:35:28,307 | INFO     | PanDA job id: 6896715500
[2025-11-26 19:36:22] 2025-11-27 00:35:28,307 | INFO     | task id: 47556161
[2025-11-26 19:36:22] 2025-11-27 00:35:28,307 | INFO     | errors: (none)
[2025-11-26 19:36:22] 2025-11-27 00:35:28,308 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:36:22] 2025-11-27 00:35:28,308 | INFO     | pilot state: finished 
[2025-11-26 19:36:22] 2025-11-27 00:35:28,308 | INFO     | transexitcode: 0
[2025-11-26 19:36:22] 2025-11-27 00:35:28,308 | INFO     | exeerrorcode: 0
[2025-11-26 19:36:22] 2025-11-27 00:35:28,308 | INFO     | exeerrordiag: 
[2025-11-26 19:36:22] 2025-11-27 00:35:28,309 | INFO     | exitcode: 0
[2025-11-26 19:36:22] 2025-11-27 00:35:28,309 | INFO     | exitmsg: OK
[2025-11-26 19:36:22] 2025-11-27 00:35:28,309 | INFO     | cpuconsumptiontime: 245931 s
[2025-11-26 19:36:22] 2025-11-27 00:35:28,309 | INFO     | nevents: 1000
[2025-11-26 19:36:22] 2025-11-27 00:35:28,309 | INFO     | neventsw: 0
[2025-11-26 19:36:22] 2025-11-27 00:35:28,309 | INFO     | pid: 3774109
[2025-11-26 19:36:22] 2025-11-27 00:35:28,309 | INFO     | pgrp: 3774109
[2025-11-26 19:36:22] 2025-11-27 00:35:28,310 | INFO     | corecount: 9
[2025-11-26 19:36:22] 2025-11-27 00:35:28,310 | INFO     | event service: False
[2025-11-26 19:36:22] 2025-11-27 00:35:28,310 | INFO     | sizes: {0: 2283436, 2: 2284121, 4: 2284320, 5: 2284376, 17: 2284376, 29: 2284404, 40: 2284560, 47: 2284850, 51: 2284906, 70176: 2343349, 70179: 2352679, 70182: 235
[2025-11-26 19:36:22] 2025-11-27 00:35:28,310 | INFO     | --------------------------------------------------
[2025-11-26 19:36:22] 2025-11-27 00:35:28,310 | INFO     | 
[2025-11-26 19:36:22] 2025-11-27 00:35:28,310 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 19:36:22] 2025-11-27 00:35:28,331 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,331 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,331 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,331 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,332 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,332 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,332 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,332 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,332 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,332 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,332 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,332 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,332 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,333 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,333 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,333 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,333 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,333 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:36:22] 2025-11-27 00:35:28,333 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,333 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:36:22] 2025-11-27 00:35:28,334 | INFO     | job 6896715500 has completed (purged errors)
[2025-11-26 19:36:22] 2025-11-27 00:35:28,334 | INFO     | overall cleanup function is called
[2025-11-26 19:36:22] 2025-11-27 00:35:28,437 | WARNING  | process 3774109 can no longer be monitored (due to stat problems) - aborting
[2025-11-26 19:36:22] 2025-11-27 00:35:28,598 | INFO     | using path: /tmp/boinchome/slots/5/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:36:22] 2025-11-27 00:35:28,812 | INFO     | number of running child processes to parent process 3774109: 1
[2025-11-26 19:36:22] 2025-11-27 00:35:28,813 | INFO     | maximum number of monitored processes: 17
[2025-11-26 19:36:22] 2025-11-27 00:35:28,813 | INFO     | aborting job monitoring since job object (job id=6896715500) has expired
[2025-11-26 19:36:22] 2025-11-27 00:35:29,353 | INFO     | --- collectZombieJob: --- 10, [3774109]
[2025-11-26 19:36:22] 2025-11-27 00:35:29,353 | INFO     | zombie collector waiting for pid 3774109
[2025-11-26 19:36:22] 2025-11-27 00:35:29,353 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:36:22] 2025-11-27 00:35:29,353 | INFO     | collected zombie processes
[2025-11-26 19:36:22] 2025-11-27 00:35:29,353 | INFO     | will attempt to kill all subprocesses of pid=3774109
[2025-11-26 19:36:22] 2025-11-27 00:35:29,564 | INFO     | process IDs to be killed: [3774109] (in reverse order)
[2025-11-26 19:36:22] 2025-11-27 00:35:29,620 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:36:22] 2025-11-27 00:35:29,621 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:36:22] 2025-11-27 00:35:29,629 | INFO     | did not find any defunct processes belonging to 3774109
[2025-11-26 19:36:22] 2025-11-27 00:35:29,637 | INFO     | did not find any defunct processes belonging to 3774109
[2025-11-26 19:36:22] 2025-11-27 00:35:29,638 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:36:22] 2025-11-27 00:35:29,638 | INFO     | ready for new job
[2025-11-26 19:36:22] 2025-11-27 00:35:29,638 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:36:22] 2025-11-27 00:35:29,644 | INFO     | ***************************************
[2025-11-26 19:36:22] 2025-11-27 00:35:29,645 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:36:22] 2025-11-27 00:35:29,645 | INFO     | ***************************************
[2025-11-26 19:36:22] 2025-11-27 00:35:29,645 | INFO     | 
[2025-11-26 19:36:22] 2025-11-27 00:35:29,648 | INFO     | architecture information:
[2025-11-26 19:36:22] 2025-11-27 00:35:29,649 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:36:22] 2025-11-27 00:35:29,660 | INFO     | cat /etc/os-release:
[2025-11-26 19:36:22] NAME="CentOS Linux"
[2025-11-26 19:36:22] VERSION="7 (Core)"
[2025-11-26 19:36:22] ID="centos"
[2025-11-26 19:36:22] ID_LIKE="rhel fedora"
[2025-11-26 19:36:22] VERSION_ID="7"
[2025-11-26 19:36:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:36:22] ANSI_COLOR="0;31"
[2025-11-26 19:36:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:36:22] HOME_URL="https://www.centos.org/"
[2025-11-26 19:36:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:36:22] 
[2025-11-26 19:36:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:36:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:36:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:36:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:36:22] 
[2025-11-26 19:36:22] 2025-11-27 00:35:29,661 | INFO     | ***************************************
[2025-11-26 19:36:22] 2025-11-27 00:35:30,164 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 19:36:22] 2025-11-27 00:35:30,180 | INFO     | sufficient remaining disk space (71406977024 B)
[2025-11-26 19:36:22] 2025-11-27 00:35:30,180 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:36:22] 2025-11-27 00:35:30,181 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:36:22] 2025-11-27 00:35:30,181 | INFO     | update_server=False
[2025-11-26 19:36:22] 2025-11-27 00:35:30,181 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:36:22] 2025-11-27 00:35:30,181 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:36:22] 2025-11-27 00:35:30,181 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:36:22] 2025-11-27 00:35:30,182 | INFO     | aborting loop
[2025-11-26 19:36:22] 2025-11-27 00:35:30,544 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:36:22] 2025-11-27 00:35:30,738 | INFO     | all data control threads have been joined
[2025-11-26 19:36:22] 2025-11-27 00:35:31,128 | INFO     | all payload control threads have been joined
[2025-11-26 19:36:22] 2025-11-27 00:35:31,183 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:31,186 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:31,187 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:31,189 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:31,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:36:22] 2025-11-27 00:35:31,413 | INFO     | all job control threads have been joined
[2025-11-26 19:36:22] 2025-11-27 00:35:31,547 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:31,743 | INFO     | [data] control thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:31,744 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:31,948 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:32,133 | INFO     | [payload] control thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:32,163 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:32,311 | INFO     | [job] validate thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:32,419 | INFO     | [job] control thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:32,457 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:32,549 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:32,685 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:35:35,239 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:36:22] 2025-11-27 00:36:00,329 | INFO     | PID=3764524 has CPU usage=5.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:36:22] 2025-11-27 00:36:00,330 | INFO     | .. there are 10 such processes running
[2025-11-26 19:36:22] 2025-11-27 00:36:00,330 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:36:22] 2025-11-27 00:36:00,330 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:36:22] 2025-11-27 00:36:00,330 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:36:22] 2025-11-27 00:36:17,330 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:36:22] 2025-11-27 00:36:17,582 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139856710485824)>', '<ExcThread(monitor, started 139856038569728)>']
[2025-11-26 19:36:22] 2025-11-27 00:36:18,411 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:36:22] 2025-11-27 00:36:18,412 | INFO     | [monitor] control thread has ended
[2025-11-26 19:36:22] 2025-11-27 00:36:22,595 | INFO     | all workflow threads have been joined
[2025-11-26 19:36:22] 2025-11-27 00:36:22,596 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:36:22] 2025-11-27 00:36:22,596 | INFO     | traces error code: 0
[2025-11-26 19:36:22] 2025-11-27 00:36:22,596 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:36:22] 2025-11-27 00:36:22,757 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:36:22] 2025-11-27 00:36:22,760 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:36:22] 2025-11-27 00:36:22,762 [wrapper] pilotpid: 3764524
[2025-11-26 19:36:22] 2025-11-27 00:36:22,765 [wrapper] Pilot exit status: 0
[2025-11-26 19:36:22] 2025-11-27 00:36:22,773 [wrapper] pandaids: 6896715500
[2025-11-26 19:36:22] 2025-11-27 00:36:22,821 [wrapper] cleanup supervisor_pilot 1284835 3764525
[2025-11-26 19:36:22] 2025-11-27 00:36:22,824 [wrapper] Test setup, not cleaning
[2025-11-26 19:36:22] 2025-11-27 00:36:22,826 [wrapper] apfmon messages muted
[2025-11-26 19:36:22] 2025-11-27 00:36:22,828 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:36:22] 2025-11-27 00:36:22,831 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:36:22]  *** Error codes and diagnostics ***
[2025-11-26 19:36:22]     "exeErrorCode": 0,
[2025-11-26 19:36:22]     "exeErrorDiag": "",
[2025-11-26 19:36:22]     "pilotErrorCode": 0,
[2025-11-26 19:36:22]     "pilotErrorDiag": "",
[2025-11-26 19:36:22]  *** Listing of results directory ***
[2025-11-26 19:36:22] total 1333960
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-26 19:36:22] -rwx------. 1 boincer umatlas     36292 Nov 25 01:57 runpilot2-wrapper.sh
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:57 queuedata.json
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:36:22] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:02 run_atlas
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:02 job.xml
[2025-11-26 19:36:22] -rw-r--r--. 2 boincer umatlas 410370176 Nov 26 00:02 EVNT.47483658._002129.pool.root.1
[2025-11-26 19:36:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 19:36:22] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:02 shared
[2025-11-26 19:36:22] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:02 input.tar.gz
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:02 boinc_lockfile
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:02 pandaJob.out
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas        57 Nov 26 00:02 setup.sh.local
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 19:36:22] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:26 boinc_task_state.xml
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas      6843 Nov 26 19:29 init_data.xml
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas 928334094 Nov 26 19:34 HITS.47556161._001124.pool.root.1
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas        95 Nov 26 19:35 pilot_heartbeat.json
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas      1055 Nov 26 19:35 memory_monitor_summary.json
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:35 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas   2394596 Nov 26 19:35 log.47556161._001124.job.log.tgz.1
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas      8624 Nov 26 19:35 heartbeat.json
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:36 boinc_mmap_file
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas        29 Nov 26 19:36 wrapper_checkpoint.txt
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas      4824 Nov 26 19:36 pilotlog.txt
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas   9275117 Nov 26 19:36 log.47556161._001124.job.log.1
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas       353 Nov 26 19:36 output.list
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:36 runtime_log
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas  11694080 Nov 26 19:36 result.tar.gz
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 19:36 runtime_log.err
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas       662 Nov 26 19:36 QSjMDmtA2h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8DMKDmCeKPkn.diag
[2025-11-26 19:36:22] -rw-r--r--. 1 boincer umatlas     21880 Nov 26 19:36 stderr.txt
[2025-11-26 19:36:22] HITS file was successfully produced:
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas 928334094 Nov 26 19:34 shared/HITS.pool.root.1
[2025-11-26 19:36:22]  *** Contents of shared directory: ***
[2025-11-26 19:36:22] total 1319360
[2025-11-26 19:36:22] -rw-r--r--. 2 boincer umatlas 410370176 Nov 26 00:02 ATLAS.root_0
[2025-11-26 19:36:22] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 19:36:22] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:02 input.tar.gz
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas 928334094 Nov 26 19:34 HITS.pool.root.1
[2025-11-26 19:36:22] -rw-------. 1 boincer umatlas  11694080 Nov 26 19:36 result.tar.gz
19:36:24 (3760647): run_atlas exited; CPU time 246687.119617
19:36:24 (3760647): called boinc_finish(0)

</stderr_txt>
]]>

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