Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:57 (753327): wrapper (7.7.26015): starting
00:01:57 (753327): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:57] Arguments: --nthreads 9
[2025-11-26 00:01:57] Threads: 9
[2025-11-26 00:01:57] Checking for CVMFS
[2025-11-26 00:01:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:59] 2.13.3.0 11360 29469 363520 153309 2 359 30672699 32935937 28047 16776704 0 156258016 99.539 182429924 37488 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:59] CVMFS is ok
[2025-11-26 00:01:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:59] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:59] Checking for apptainer binary...
[2025-11-26 00:01:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:59] Running /usr/bin/apptainer --version
[2025-11-26 00:01:59] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:59] c6-8-25-3.aglt2.org
[2025-11-26 00:01:59] apptainer works
[2025-11-26 00:01:59] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:59] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:59] Starting ATLAS job with PandaID=6895357362
[2025-11-26 00:01:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:40:05 (753327): BOINC client no longer exists - exiting
23:40:05 (753327): timer handler: client dead, exiting
23:47:39 (3121115): wrapper (7.7.26015): starting
23:47:39 (3121115): wrapper: running run_atlas (--nthreads 10)
[2025-11-26 23:47:39] Arguments: --nthreads 10
[2025-11-26 23:47:39] Threads: 10
[2025-11-26 23:47:39] This job has been restarted, cleaning up previous attempt
[2025-11-26 23:47:40] Checking for CVMFS
[2025-11-26 23:47:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:47:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:47:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:47:40] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:47:40] 2.13.3.0 11360 30894 356184 153347 0 251 27805766 32935936 32396 16776704 0 166961810 99.541 194230389 37341 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 23:47:40] CVMFS is ok
[2025-11-26 23:47:40] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:47:40] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:47:40] Further information can be found at the LHC@home message board.
[2025-11-26 23:47:40] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:47:40] Checking for apptainer binary...
[2025-11-26 23:47:40] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:47:40] Running /usr/bin/apptainer --version
[2025-11-26 23:47:40] apptainer version 1.4.4-1.el9
[2025-11-26 23:47:40] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:47:40] c6-8-25-3.aglt2.org
[2025-11-26 23:47:40] apptainer works
[2025-11-26 23:47:40] Set ATHENA_PROC_NUMBER=10
[2025-11-26 23:47:40] Set ATHENA_CORE_NUMBER=10
[2025-11-26 23:47:40] Starting ATLAS job with PandaID=6895357362
[2025-11-26 23:47:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/8 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 15:11:58]  *** The last 200 lines of the pilot log: ***
[2025-11-27 15:11:58] 2025-11-27 20:10:38,484 | INFO     | time since job start (55366s) is within the limit (172800.0s)
[2025-11-27 15:11:58] 2025-11-27 20:10:40,491 | INFO     | time since job start (55368s) is within the limit (172800.0s)
[2025-11-27 15:11:58] 2025-11-27 20:10:40,609 | INFO     | monitor loop #3037: job 0:6895357362 is in state 'finished'
[2025-11-27 15:11:58] 2025-11-27 20:10:40,609 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:11:58] 2025-11-27 20:10:42,501 | INFO     | time since job start (55370s) is within the limit (172800.0s)
[2025-11-27 15:11:58] 2025-11-27 20:10:43,114 | INFO     | monitor loop #3038: job 0:6895357362 is in state 'finished'
[2025-11-27 15:11:58] 2025-11-27 20:10:43,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:11:58] 2025-11-27 20:10:44,536 | INFO     | time since job start (55372s) is within the limit (172800.0s)
[2025-11-27 15:11:58] 2025-11-27 20:10:45,652 | INFO     | monitor loop #3039: job 0:6895357362 is in state 'finished'
[2025-11-27 15:11:58] 2025-11-27 20:10:45,652 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:11:58] 2025-11-27 20:10:48,297 | INFO     | monitor loop #3040: job 0:6895357362 is in state 'finished'
[2025-11-27 15:11:58] 2025-11-27 20:10:48,297 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:11:58] 2025-11-27 20:10:50,820 | INFO     | monitor loop #3041: job 0:6895357362 is in state 'finished'
[2025-11-27 15:11:58] 2025-11-27 20:10:50,820 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 15:11:58] 2025-11-27 20:10:51,007 | INFO     | PID=3139490 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:11:58] 2025-11-27 20:10:51,007 | INFO     | .. there are 48 such processes running
[2025-11-27 15:11:58] 2025-11-27 20:10:52,025 | INFO     | time since job start (55380s) is within the limit (172800.0s)
[2025-11-27 15:11:58] 2025-11-27 20:10:52,209 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 15:11:58] 2025-11-27 20:10:52,278 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2674.400625000001
[2025-11-27 15:11:58] 2025-11-27 20:10:52,365 | INFO     | using path: /tmp/boinchome/slots/8/PanDA_Pilot-6895357362/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 15:11:58] 2025-11-27 20:10:52,366 | INFO     | extracted standard info from prmon json
[2025-11-27 15:11:58] 2025-11-27 20:10:52,366 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 15:11:58] 2025-11-27 20:10:52,366 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 15:11:58] 2025-11-27 20:10:52,406 | INFO     | fitting pss+swap vs Time
[2025-11-27 15:11:58] 2025-11-27 20:10:52,408 | INFO     | sum of square deviations: 231377621864.2913
[2025-11-27 15:11:58] 2025-11-27 20:10:52,442 | INFO     | sum of deviations: 346465741848.7919
[2025-11-27 15:11:58] 2025-11-27 20:10:52,442 | INFO     | mean x: 1764246536.063947
[2025-11-27 15:11:58] 2025-11-27 20:10:52,443 | INFO     | mean y: 3150855.15876516
[2025-11-27 15:11:58] 2025-11-27 20:10:52,443 | INFO     | intersect: -2638638700.7909045
[2025-11-27 15:11:58] 2025-11-27 20:10:52,448 | INFO     | chi2: 20.320184265952584
[2025-11-27 15:11:58] 2025-11-27 20:10:52,450 | INFO     | sum of square deviations: 227573179459.5922
[2025-11-27 15:11:58] 2025-11-27 20:10:52,514 | INFO     | sum of deviations: 715696520897.7919
[2025-11-27 15:11:58] 2025-11-27 20:10:52,518 | INFO     | mean x: 1764246383.5809312
[2025-11-27 15:11:58] 2025-11-27 20:10:52,518 | INFO     | mean y: 3165649.1740576494
[2025-11-27 15:11:58] 2025-11-27 20:10:52,518 | INFO     | intersect: -5545225429.835241
[2025-11-27 15:11:58] 2025-11-27 20:10:52,520 | INFO     | chi2: 16.122480648981455
[2025-11-27 15:11:58] 2025-11-27 20:10:52,520 | INFO     | current chi2=16.122480648981455 (change=20.657802911780564 %)
[2025-11-27 15:11:58] 2025-11-27 20:10:52,520 | INFO     | right removable region: 901
[2025-11-27 15:11:58] 2025-11-27 20:10:52,521 | INFO     | sum of square deviations: 227571649776.06854
[2025-11-27 15:11:58] 2025-11-27 20:10:52,554 | INFO     | sum of deviations: 100835809408.03221
[2025-11-27 15:11:58] 2025-11-27 20:10:52,555 | INFO     | mean x: 1764246688.5776052
[2025-11-27 15:11:58] 2025-11-27 20:10:52,555 | INFO     | mean y: 3160682.0709534367
[2025-11-27 15:11:58] 2025-11-27 20:10:52,555 | INFO     | intersect: -778567810.9694449
[2025-11-27 15:11:58] 2025-11-27 20:10:52,560 | INFO     | chi2: 18.45156794108586
[2025-11-27 15:11:58] 2025-11-27 20:10:52,560 | INFO     | current chi2=18.45156794108586 (change=9.195863090659461 %)
[2025-11-27 15:11:58] 2025-11-27 20:10:52,561 | INFO     | left removable region: 10
[2025-11-27 15:11:58] 2025-11-27 20:10:52,562 | INFO     | sum of square deviations: 219347915089.65765
[2025-11-27 15:11:58] 2025-11-27 20:10:52,589 | INFO     | sum of deviations: 446520774024.74854
[2025-11-27 15:11:58] 2025-11-27 20:10:52,590 | INFO     | mean x: 1764246658.1077442
[2025-11-27 15:11:58] 2025-11-27 20:10:52,590 | INFO     | mean y: 3181668.138047138
[2025-11-27 15:11:58] 2025-11-27 20:10:52,590 | INFO     | intersect: -3588248790.7603045
[2025-11-27 15:11:58] 2025-11-27 20:10:52,595 | INFO     | chi2: 13.503866303200057
[2025-11-27 15:11:58] 2025-11-27 20:10:52,596 | INFO     | current memory leak: 2.04 B/s (using 891 data points, chi2=13.50)
[2025-11-27 15:11:58] 2025-11-27 20:10:52,597 | INFO     | could have reported an average CPU frequency of 2686 MHz (34 samples)
[2025-11-27 15:11:58] 2025-11-27 20:10:52,597 | INFO     | ..............................
[2025-11-27 15:11:58] 2025-11-27 20:10:52,598 | INFO     | . Timing measurements:
[2025-11-27 15:11:58] 2025-11-27 20:10:52,598 | INFO     | . get job = 0 s
[2025-11-27 15:11:58] 2025-11-27 20:10:52,598 | INFO     | . initial setup = 2 s
[2025-11-27 15:11:58] 2025-11-27 20:10:52,598 | INFO     | . payload setup = 6 s
[2025-11-27 15:11:58] 2025-11-27 20:10:52,598 | INFO     | . stage-in = 0 s
[2025-11-27 15:11:58] 2025-11-27 20:10:52,598 | INFO     | . payload execution = 55298 s
[2025-11-27 15:11:58] 2025-11-27 20:10:52,598 | INFO     | . stage-out = 13 s
[2025-11-27 15:11:58] 2025-11-27 20:10:52,598 | INFO     | . log creation = 6 s
[2025-11-27 15:11:58] 2025-11-27 20:10:52,598 | INFO     | ..............................
[2025-11-27 15:11:58] 2025-11-27 20:10:53,407 | INFO     | 
[2025-11-27 15:11:58] 2025-11-27 20:10:53,407 | INFO     | job summary report
[2025-11-27 15:11:58] 2025-11-27 20:10:53,407 | INFO     | --------------------------------------------------
[2025-11-27 15:11:58] 2025-11-27 20:10:53,407 | INFO     | PanDA job id: 6895357362
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | task id: 47556149
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | errors: (none)
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | pilot state: finished 
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | transexitcode: 0
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | exeerrorcode: 0
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | exeerrordiag: 
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | exitcode: 0
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | exitmsg: OK
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | cpuconsumptiontime: 270370 s
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | nevents: 1000
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | neventsw: 0
[2025-11-27 15:11:58] 2025-11-27 20:10:53,408 | INFO     | pid: 3171297
[2025-11-27 15:11:58] 2025-11-27 20:10:53,409 | INFO     | pgrp: 3171297
[2025-11-27 15:11:58] 2025-11-27 20:10:53,409 | INFO     | corecount: 10
[2025-11-27 15:11:58] 2025-11-27 20:10:53,409 | INFO     | event service: False
[2025-11-27 15:11:58] 2025-11-27 20:10:53,409 | INFO     | sizes: {0: 2284264, 5: 2284526, 11: 2284582, 55309: 2334320, 55310: 2334319, 55324: 2343369, 55325: 2343553, 55365: 2343799}
[2025-11-27 15:11:58] 2025-11-27 20:10:53,409 | INFO     | --------------------------------------------------
[2025-11-27 15:11:58] 2025-11-27 20:10:53,409 | INFO     | 
[2025-11-27 15:11:58] 2025-11-27 20:10:53,409 | INFO     | executing command: ls -lF /tmp/boinchome/slots/8
[2025-11-27 15:11:58] 2025-11-27 20:10:53,705 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,706 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,706 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,706 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,706 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,706 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,706 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,706 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,706 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 15:11:58] 2025-11-27 20:10:53,707 | INFO     | job 6895357362 has completed (purged errors)
[2025-11-27 15:11:58] 2025-11-27 20:10:53,708 | INFO     | overall cleanup function is called
[2025-11-27 15:11:58] 2025-11-27 20:10:54,807 | INFO     | --- collectZombieJob: --- 10, [3171297]
[2025-11-27 15:11:58] 2025-11-27 20:10:54,807 | INFO     | zombie collector waiting for pid 3171297
[2025-11-27 15:11:58] 2025-11-27 20:10:54,807 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 15:11:58] 2025-11-27 20:10:54,807 | INFO     | collected zombie processes
[2025-11-27 15:11:58] 2025-11-27 20:10:54,807 | INFO     | will attempt to kill all subprocesses of pid=3171297
[2025-11-27 15:11:58] 2025-11-27 20:10:58,630 | INFO     | process IDs to be killed: [3171297] (in reverse order)
[2025-11-27 15:11:58] 2025-11-27 20:10:59,284 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 15:11:58] 2025-11-27 20:10:59,284 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 15:11:58] 2025-11-27 20:10:59,449 | INFO     | did not find any defunct processes belonging to 3171297
[2025-11-27 15:11:58] 2025-11-27 20:10:59,595 | INFO     | did not find any defunct processes belonging to 3171297
[2025-11-27 15:11:58] 2025-11-27 20:10:59,597 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 15:11:58] 2025-11-27 20:10:59,597 | INFO     | ready for new job
[2025-11-27 15:11:58] 2025-11-27 20:10:59,598 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 15:11:58] 2025-11-27 20:10:59,602 | INFO     | ***************************************
[2025-11-27 15:11:58] 2025-11-27 20:10:59,603 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 15:11:58] 2025-11-27 20:10:59,603 | INFO     | ***************************************
[2025-11-27 15:11:58] 2025-11-27 20:10:59,603 | INFO     | 
[2025-11-27 15:11:58] 2025-11-27 20:10:59,609 | INFO     | architecture information:
[2025-11-27 15:11:58] 2025-11-27 20:10:59,610 | INFO     | executing command: cat /etc/os-release
[2025-11-27 15:11:58] 2025-11-27 20:10:59,634 | INFO     | cat /etc/os-release:
[2025-11-27 15:11:58] NAME="CentOS Linux"
[2025-11-27 15:11:58] VERSION="7 (Core)"
[2025-11-27 15:11:58] ID="centos"
[2025-11-27 15:11:58] ID_LIKE="rhel fedora"
[2025-11-27 15:11:58] VERSION_ID="7"
[2025-11-27 15:11:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 15:11:58] ANSI_COLOR="0;31"
[2025-11-27 15:11:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 15:11:58] HOME_URL="https://www.centos.org/"
[2025-11-27 15:11:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 15:11:58] 
[2025-11-27 15:11:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 15:11:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 15:11:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 15:11:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 15:11:58] 
[2025-11-27 15:11:58] 2025-11-27 20:10:59,635 | INFO     | ***************************************
[2025-11-27 15:11:58] 2025-11-27 20:11:00,138 | INFO     | executing command: df -mP /tmp/boinchome/slots/8
[2025-11-27 15:11:58] 2025-11-27 20:11:00,214 | INFO     | sufficient remaining disk space (65653440512 B)
[2025-11-27 15:11:58] 2025-11-27 20:11:00,215 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 15:11:58] 2025-11-27 20:11:00,215 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 15:11:58] 2025-11-27 20:11:00,215 | INFO     | update_server=False
[2025-11-27 15:11:58] 2025-11-27 20:11:00,215 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 15:11:58] 2025-11-27 20:11:00,215 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:11:58] 2025-11-27 20:11:00,216 | INFO     | aborting loop
[2025-11-27 15:11:58] 2025-11-27 20:11:00,216 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 15:11:58] 2025-11-27 20:11:00,703 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 15:11:58] 2025-11-27 20:11:01,243 | INFO     | [job] retrieve thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:01,244 | INFO     | [job] job monitor thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:01,289 | INFO     | [payload] validate_post thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:01,295 | INFO     | all data control threads have been joined
[2025-11-27 15:11:58] 2025-11-27 20:11:01,400 | INFO     | all payload control threads have been joined
[2025-11-27 15:11:58] 2025-11-27 20:11:01,432 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:01,797 | INFO     | all job control threads have been joined
[2025-11-27 15:11:58] 2025-11-27 20:11:01,798 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:02,189 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 15:11:58] 2025-11-27 20:11:02,302 | INFO     | [data] control thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:02,328 | INFO     | [payload] failed_post thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:02,406 | INFO     | [payload] control thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:02,576 | INFO     | [job] validate thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:02,577 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:02,583 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:02,695 | INFO     | [data] copytool_in thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:02,713 | INFO     | [data] copytool_out thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:02,815 | INFO     | [job] control thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:03,195 | INFO     | [job] queue monitor thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:04,227 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 15:11:58] 2025-11-27 20:11:28,183 | INFO     | PID=3139490 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 15:11:58] 2025-11-27 20:11:28,184 | INFO     | .. there are 48 such processes running
[2025-11-27 15:11:58] 2025-11-27 20:11:28,184 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 15:11:58] 2025-11-27 20:11:28,184 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 15:11:58] 2025-11-27 20:11:28,184 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 15:11:58] 2025-11-27 20:11:31,760 | INFO     | [monitor] cgroup control has ended
[2025-11-27 15:11:58] 2025-11-27 20:11:32,568 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140536588060480)>', '<ExcThread(monitor, started 140535801038592)>']
[2025-11-27 15:11:58] 2025-11-27 20:11:33,214 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 15:11:58] 2025-11-27 20:11:33,214 | INFO     | [monitor] control thread has ended
[2025-11-27 15:11:58] 2025-11-27 20:11:37,594 | INFO     | all workflow threads have been joined
[2025-11-27 15:11:58] 2025-11-27 20:11:37,597 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 15:11:58] 2025-11-27 20:11:37,597 | INFO     | traces error code: 0
[2025-11-27 15:11:58] 2025-11-27 20:11:37,598 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 15:11:58] 2025-11-27 20:11:38,154 [wrapper] ==== pilot stdout END ====
[2025-11-27 15:11:58] 2025-11-27 20:11:38,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 15:11:58] 2025-11-27 20:11:38,180 [wrapper] pilotpid: 3139490
[2025-11-27 15:11:58] 2025-11-27 20:11:38,192 [wrapper] Pilot exit status: 0
[2025-11-27 15:11:58] 2025-11-27 20:11:38,392 [wrapper] pandaids: 6895357362 6895357362
[2025-11-27 15:11:58] 2025-11-27 20:11:39,383 [wrapper] cleanup supervisor_pilot 2708368 3139491
[2025-11-27 15:11:58] 2025-11-27 20:11:39,409 [wrapper] Test setup, not cleaning
[2025-11-27 15:11:58] 2025-11-27 20:11:39,419 [wrapper] apfmon messages muted
[2025-11-27 15:11:58] 2025-11-27 20:11:39,458 [wrapper] ==== wrapper stdout END ====
[2025-11-27 15:11:58] 2025-11-27 20:11:39,480 [wrapper] ==== wrapper stderr END ====
[2025-11-27 15:11:58]  *** Error codes and diagnostics ***
[2025-11-27 15:11:58]     "exeErrorCode": 0,
[2025-11-27 15:11:58]     "exeErrorDiag": "",
[2025-11-27 15:11:58]     "pilotErrorCode": 0,
[2025-11-27 15:11:58]     "pilotErrorDiag": "",
[2025-11-27 15:11:58]  *** Listing of results directory ***
[2025-11-27 15:11:58] total 1721012
[2025-11-27 15:11:58] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas    576529 Nov 23 06:59 pilot3.tar.gz
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas      5112 Nov 23 07:01 queuedata.json
[2025-11-27 15:11:58] -rwx------. 1 boincer umatlas     36292 Nov 23 07:02 runpilot2-wrapper.sh
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 15:11:58] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-27 15:11:58] -rw-r--r--. 3 boincer umatlas 409854160 Nov 26 00:01 EVNT.47483658._001159.pool.root.1
[2025-11-27 15:11:58] -rw-r--r--. 3 boincer umatlas 409854160 Nov 26 00:01 ATLAS.root_0
[2025-11-27 15:11:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 15:11:58] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-27 15:11:58] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 00:01 input.tar.gz
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 23:47 pandaJob.out
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas        57 Nov 26 23:47 setup.sh.local
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas    991570 Nov 26 23:47 agis_schedconf.cvmfs.json
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:39 boinc_task_state.xml
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas 920867077 Nov 27 15:07 HITS.47556149._001460.pool.root.1
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas      6878 Nov 27 15:09 init_data.xml
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas      1081 Nov 27 15:09 memory_monitor_summary.json
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas   1516240 Nov 27 15:10 agis_ddmendpoints.agis.ALL.json
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas   2266987 Nov 27 15:10 log.47556149._001460.job.log.tgz.1
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas        96 Nov 27 15:10 pilot_heartbeat.json
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas      8648 Nov 27 15:10 heartbeat.json
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas      4824 Nov 27 15:11 pilotlog.txt
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas   6636894 Nov 27 15:11 log.47556149._001460.job.log.1
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas       353 Nov 27 15:11 output.list
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas       620 Nov 27 15:11 runtime_log
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas   8919040 Nov 27 15:11 result.tar.gz
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas      9435 Nov 27 15:11 runtime_log.err
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas       790 Nov 27 15:11 PbaLDm0yNh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmlsKKDmRnBcLn.diag
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas        29 Nov 27 15:11 wrapper_checkpoint.txt
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 15:11 boinc_mmap_file
[2025-11-27 15:11:58] -rw-r--r--. 1 boincer umatlas     24145 Nov 27 15:11 stderr.txt
[2025-11-27 15:11:58] HITS file was successfully produced:
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas 920867077 Nov 27 15:07 shared/HITS.pool.root.1
[2025-11-27 15:11:58]  *** Contents of shared directory: ***
[2025-11-27 15:11:58] total 1308856
[2025-11-27 15:11:58] -rw-r--r--. 3 boincer umatlas 409854160 Nov 26 00:01 ATLAS.root_0
[2025-11-27 15:11:58] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 15:11:58] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 00:01 input.tar.gz
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas 920867077 Nov 27 15:07 HITS.pool.root.1
[2025-11-27 15:11:58] -rw-------. 1 boincer umatlas   8919040 Nov 27 15:11 result.tar.gz
15:12:00 (3121115): run_atlas exited; CPU time 272449.929133
15:12:00 (3121115): called boinc_finish(0)

</stderr_txt>
]]>

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