Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:16 (2442250): wrapper (7.7.26015): starting
00:02:16 (2442250): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:02:16] Arguments: --nthreads 8
[2025-11-26 00:02:16] Threads: 8
[2025-11-26 00:02:16] Checking for CVMFS
[2025-11-26 00:02:17] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:02:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:02:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:02:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:02:18] 2.13.2.0 6307 32449 296172 153309 0 278 30880815 40960000 12759 16776704 0 48761237 99.735 29026945 38841 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:02:18] CVMFS is ok
[2025-11-26 00:02:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:02:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:02:18] Further information can be found at the LHC@home message board.
[2025-11-26 00:02:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:02:18] Checking for apptainer binary...
[2025-11-26 00:02:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:02:18] Running /usr/bin/apptainer --version
[2025-11-26 00:02:18] apptainer version 1.4.4-1.el9
[2025-11-26 00:02:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:02:18] c-206-39.aglt2.org
[2025-11-26 00:02:18] apptainer works
[2025-11-26 00:02:18] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:02:18] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:02:18] Starting ATLAS job with PandaID=6893851188
[2025-11-26 00:02:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:17:22]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:17:22] 2025-11-27 22:16:18,891 | INFO     | total number of processed events: 1000 (read)
[2025-11-27 17:17:22] 2025-11-27 22:16:18,892 | INFO     | executing command: lscpu
[2025-11-27 17:17:22] 2025-11-27 22:16:18,959 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-27 17:17:22] 2025-11-27 22:16:19,738 | INFO     | time since job start (148362s) is within the limit (172800.0s)
[2025-11-27 17:17:22] 2025-11-27 22:16:20,385 | INFO     | monitor loop #8590: job 0:6893851188 is in state 'finished'
[2025-11-27 17:17:22] 2025-11-27 22:16:20,385 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:17:22] 2025-11-27 22:16:21,744 | INFO     | time since job start (148364s) is within the limit (172800.0s)
[2025-11-27 17:17:22] 2025-11-27 22:16:22,890 | INFO     | monitor loop #8591: job 0:6893851188 is in state 'finished'
[2025-11-27 17:17:22] 2025-11-27 22:16:22,890 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:17:22] 2025-11-27 22:16:23,753 | INFO     | time since job start (148366s) is within the limit (172800.0s)
[2025-11-27 17:17:22] 2025-11-27 22:16:25,395 | INFO     | monitor loop #8592: job 0:6893851188 is in state 'finished'
[2025-11-27 17:17:22] 2025-11-27 22:16:25,395 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:17:22] 2025-11-27 22:16:25,760 | INFO     | time since job start (148368s) is within the limit (172800.0s)
[2025-11-27 17:17:22] 2025-11-27 22:16:27,766 | INFO     | time since job start (148370s) is within the limit (172800.0s)
[2025-11-27 17:17:22] 2025-11-27 22:16:27,920 | INFO     | monitor loop #8593: job 0:6893851188 is in state 'finished'
[2025-11-27 17:17:22] 2025-11-27 22:16:27,920 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:17:22] 2025-11-27 22:16:29,798 | INFO     | time since job start (148372s) is within the limit (172800.0s)
[2025-11-27 17:17:22] 2025-11-27 22:16:29,876 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 17:17:22] 2025-11-27 22:16:29,880 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3229.105953125
[2025-11-27 17:17:22] 2025-11-27 22:16:29,889 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6893851188/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:17:22] 2025-11-27 22:16:29,890 | INFO     | extracted standard info from prmon json
[2025-11-27 17:17:22] 2025-11-27 22:16:29,890 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:17:22] 2025-11-27 22:16:29,890 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:17:22] 2025-11-27 22:16:29,919 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:17:22] 2025-11-27 22:16:29,921 | INFO     | sum of square deviations: 4443594103182.666
[2025-11-27 17:17:22] 2025-11-27 22:16:30,036 | INFO     | sum of deviations: 16890876361298.908
[2025-11-27 17:17:22] 2025-11-27 22:16:30,036 | INFO     | mean x: 1764207664.2577193
[2025-11-27 17:17:22] 2025-11-27 22:16:30,036 | INFO     | mean y: 2934942.765335529
[2025-11-27 17:17:22] 2025-11-27 22:16:30,036 | INFO     | intersect: -6703126151.178848
[2025-11-27 17:17:22] 2025-11-27 22:16:30,038 | INFO     | chi2: 19.373867166616943
[2025-11-27 17:17:22] 2025-11-27 22:16:30,041 | INFO     | sum of square deviations: 4416211143921.847
[2025-11-27 17:17:22] 2025-11-27 22:16:30,150 | INFO     | sum of deviations: 17713023704648.285
[2025-11-27 17:17:22] 2025-11-27 22:16:30,150 | INFO     | mean x: 1764207511.7665017
[2025-11-27 17:17:22] 2025-11-27 22:16:30,150 | INFO     | mean y: 2939521.337871287
[2025-11-27 17:17:22] 2025-11-27 22:16:30,150 | INFO     | intersect: -7073137336.728141
[2025-11-27 17:17:22] 2025-11-27 22:16:30,152 | INFO     | chi2: 16.34303546277755
[2025-11-27 17:17:22] 2025-11-27 22:16:30,153 | INFO     | current chi2=16.34303546277755 (change=15.643917023761835 %)
[2025-11-27 17:17:22] 2025-11-27 22:16:30,153 | INFO     | right removable region: 2423
[2025-11-27 17:17:22] 2025-11-27 22:16:30,155 | INFO     | sum of square deviations: 4416204835301.84
[2025-11-27 17:17:22] 2025-11-27 22:16:30,265 | INFO     | sum of deviations: 15852511632257.084
[2025-11-27 17:17:22] 2025-11-27 22:16:30,266 | INFO     | mean x: 1764207816.7665017
[2025-11-27 17:17:22] 2025-11-27 22:16:30,266 | INFO     | mean y: 2940724.3481848184
[2025-11-27 17:17:22] 2025-11-27 22:16:30,266 | INFO     | intersect: -6329900703.986137
[2025-11-27 17:17:22] 2025-11-27 22:16:30,268 | INFO     | chi2: 14.746782386084924
[2025-11-27 17:17:22] 2025-11-27 22:16:30,268 | INFO     | current chi2=14.746782386084924 (change=23.883124317611387 %)
[2025-11-27 17:17:22] 2025-11-27 22:16:30,268 | INFO     | left removable region: 10
[2025-11-27 17:17:22] 2025-11-27 22:16:30,270 | INFO     | sum of square deviations: 4356352555834.698
[2025-11-27 17:17:22] 2025-11-27 22:16:30,416 | INFO     | sum of deviations: 15952016707396.404
[2025-11-27 17:17:22] 2025-11-27 22:16:30,416 | INFO     | mean x: 1764207786.2859511
[2025-11-27 17:17:22] 2025-11-27 22:16:30,417 | INFO     | mean y: 2951214.00663075
[2025-11-27 17:17:22] 2025-11-27 22:16:30,417 | INFO     | intersect: -6457194451.765832
[2025-11-27 17:17:22] 2025-11-27 22:16:30,418 | INFO     | chi2: 7.850311254595765
[2025-11-27 17:17:22] 2025-11-27 22:16:30,419 | INFO     | current memory leak: 3.66 B/s (using 2413 data points, chi2=7.85)
[2025-11-27 17:17:22] 2025-11-27 22:16:30,420 | INFO     | could have reported an average CPU frequency of 3226 MHz (84 samples)
[2025-11-27 17:17:22] 2025-11-27 22:16:30,420 | INFO     | ..............................
[2025-11-27 17:17:22] 2025-11-27 22:16:30,420 | INFO     | . Timing measurements:
[2025-11-27 17:17:22] 2025-11-27 22:16:30,420 | INFO     | . get job = 0 s
[2025-11-27 17:17:22] 2025-11-27 22:16:30,420 | INFO     | . initial setup = 11 s
[2025-11-27 17:17:22] 2025-11-27 22:16:30,420 | INFO     | . payload setup = 71 s
[2025-11-27 17:17:22] 2025-11-27 22:16:30,420 | INFO     | . stage-in = 0 s
[2025-11-27 17:17:22] 2025-11-27 22:16:30,420 | INFO     | . payload execution = 148209 s
[2025-11-27 17:17:22] 2025-11-27 22:16:30,420 | INFO     | . stage-out = 7 s
[2025-11-27 17:17:22] 2025-11-27 22:16:30,420 | INFO     | . log creation = 2 s
[2025-11-27 17:17:22] 2025-11-27 22:16:30,420 | INFO     | ..............................
[2025-11-27 17:17:22] 2025-11-27 22:16:30,498 | INFO     | 
[2025-11-27 17:17:22] 2025-11-27 22:16:30,498 | INFO     | job summary report
[2025-11-27 17:17:22] 2025-11-27 22:16:30,498 | INFO     | --------------------------------------------------
[2025-11-27 17:17:22] 2025-11-27 22:16:30,498 | INFO     | PanDA job id: 6893851188
[2025-11-27 17:17:22] 2025-11-27 22:16:30,498 | INFO     | task id: 47523449
[2025-11-27 17:17:22] 2025-11-27 22:16:30,499 | INFO     | errors: (none)
[2025-11-27 17:17:22] 2025-11-27 22:16:30,499 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:17:22] 2025-11-27 22:16:30,499 | INFO     | pilot state: finished 
[2025-11-27 17:17:22] 2025-11-27 22:16:30,499 | INFO     | transexitcode: 0
[2025-11-27 17:17:22] 2025-11-27 22:16:30,499 | INFO     | exeerrorcode: 0
[2025-11-27 17:17:22] 2025-11-27 22:16:30,506 | INFO     | exeerrordiag: 
[2025-11-27 17:17:22] 2025-11-27 22:16:30,506 | INFO     | exitcode: 0
[2025-11-27 17:17:22] 2025-11-27 22:16:30,506 | INFO     | exitmsg: OK
[2025-11-27 17:17:22] 2025-11-27 22:16:30,506 | INFO     | cpuconsumptiontime: 204468 s
[2025-11-27 17:17:22] 2025-11-27 22:16:30,506 | INFO     | nevents: 1000
[2025-11-27 17:17:22] 2025-11-27 22:16:30,506 | INFO     | neventsw: 0
[2025-11-27 17:17:22] 2025-11-27 22:16:30,506 | INFO     | pid: 2490675
[2025-11-27 17:17:22] 2025-11-27 22:16:30,507 | INFO     | pgrp: 2490675
[2025-11-27 17:17:22] 2025-11-27 22:16:30,507 | INFO     | corecount: 8
[2025-11-27 17:17:22] 2025-11-27 22:16:30,507 | INFO     | event service: False
[2025-11-27 17:17:22] 2025-11-27 22:16:30,507 | INFO     | sizes: {0: 2284144, 1: 2284144, 2: 2284144, 3: 2284343, 4: 2284371, 5: 2284399, 16: 2284583, 28: 2284611, 38: 2284901, 39: 2284929, 148286: 2378993, 148287: 237927
[2025-11-27 17:17:22] 2025-11-27 22:16:30,507 | INFO     | --------------------------------------------------
[2025-11-27 17:17:22] 2025-11-27 22:16:30,507 | INFO     | 
[2025-11-27 17:17:22] 2025-11-27 22:16:30,507 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 17:17:22] 2025-11-27 22:16:30,539 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,540 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,541 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:17:22] 2025-11-27 22:16:30,541 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,541 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:17:22] 2025-11-27 22:16:30,541 | INFO     | job 6893851188 has completed (purged errors)
[2025-11-27 17:17:22] 2025-11-27 22:16:30,541 | INFO     | overall cleanup function is called
[2025-11-27 17:17:22] 2025-11-27 22:16:31,586 | INFO     | --- collectZombieJob: --- 10, [2490675]
[2025-11-27 17:17:22] 2025-11-27 22:16:31,586 | INFO     | zombie collector waiting for pid 2490675
[2025-11-27 17:17:22] 2025-11-27 22:16:31,586 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:17:22] 2025-11-27 22:16:31,586 | INFO     | collected zombie processes
[2025-11-27 17:17:22] 2025-11-27 22:16:31,586 | INFO     | will attempt to kill all subprocesses of pid=2490675
[2025-11-27 17:17:22] 2025-11-27 22:16:33,265 | INFO     | process IDs to be killed: [2490675] (in reverse order)
[2025-11-27 17:17:22] 2025-11-27 22:16:33,427 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:17:22] 2025-11-27 22:16:33,427 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:17:22] 2025-11-27 22:16:33,446 | INFO     | did not find any defunct processes belonging to 2490675
[2025-11-27 17:17:22] 2025-11-27 22:16:33,460 | INFO     | did not find any defunct processes belonging to 2490675
[2025-11-27 17:17:22] 2025-11-27 22:16:33,461 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:17:22] 2025-11-27 22:16:33,462 | INFO     | ready for new job
[2025-11-27 17:17:22] 2025-11-27 22:16:33,462 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:17:22] 2025-11-27 22:16:33,540 | INFO     | ***************************************
[2025-11-27 17:17:22] 2025-11-27 22:16:33,540 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:17:22] 2025-11-27 22:16:33,540 | INFO     | ***************************************
[2025-11-27 17:17:22] 2025-11-27 22:16:33,540 | INFO     | 
[2025-11-27 17:17:22] 2025-11-27 22:16:33,582 | INFO     | architecture information:
[2025-11-27 17:17:22] 2025-11-27 22:16:33,624 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:17:22] 2025-11-27 22:16:33,689 | INFO     | cat /etc/os-release:
[2025-11-27 17:17:22] NAME="CentOS Linux"
[2025-11-27 17:17:22] VERSION="7 (Core)"
[2025-11-27 17:17:22] ID="centos"
[2025-11-27 17:17:22] ID_LIKE="rhel fedora"
[2025-11-27 17:17:22] VERSION_ID="7"
[2025-11-27 17:17:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:17:22] ANSI_COLOR="0;31"
[2025-11-27 17:17:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:17:22] HOME_URL="https://www.centos.org/"
[2025-11-27 17:17:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:17:22] 
[2025-11-27 17:17:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:17:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:17:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:17:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:17:22] 
[2025-11-27 17:17:22] 2025-11-27 22:16:33,689 | INFO     | ***************************************
[2025-11-27 17:17:22] 2025-11-27 22:16:34,193 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 17:17:22] 2025-11-27 22:16:34,255 | INFO     | sufficient remaining disk space (79747350528 B)
[2025-11-27 17:17:22] 2025-11-27 22:16:34,256 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:17:22] 2025-11-27 22:16:34,256 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:17:23] 2025-11-27 22:16:34,256 | INFO     | update_server=False
[2025-11-27 17:17:23] 2025-11-27 22:16:34,256 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:17:23] 2025-11-27 22:16:34,257 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:17:23] 2025-11-27 22:16:34,257 | INFO     | aborting loop
[2025-11-27 17:17:23] 2025-11-27 22:16:34,398 | INFO     | all payload control threads have been joined
[2025-11-27 17:17:23] 2025-11-27 22:16:34,432 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:17:23] 2025-11-27 22:16:34,739 | INFO     | all job control threads have been joined
[2025-11-27 17:17:23] 2025-11-27 22:16:35,262 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:35,263 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:35,294 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:35,362 | INFO     | all data control threads have been joined
[2025-11-27 17:17:23] 2025-11-27 22:16:35,404 | INFO     | [payload] control thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:35,517 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:17:23] 2025-11-27 22:16:35,744 | INFO     | [job] control thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:35,989 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:35,999 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:35,999 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:36,082 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:36,098 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:17:23] 2025-11-27 22:16:36,127 | INFO     | [job] validate thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:36,370 | INFO     | [data] control thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:36,432 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:36,439 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:36,504 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:36,523 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:16:40,113 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:17:23] 2025-11-27 22:17:04,279 | INFO     | PID=2454316 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:17:23] 2025-11-27 22:17:04,279 | INFO     | .. there are 12 such processes running
[2025-11-27 17:17:23] 2025-11-27 22:17:04,280 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:17:23] 2025-11-27 22:17:04,280 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:17:23] 2025-11-27 22:17:04,280 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:17:23] 2025-11-27 22:17:16,322 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:17:23] 2025-11-27 22:17:17,134 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140182728320832)>', '<ExcThread(monitor, started 140181927606016)>']
[2025-11-27 17:17:23] 2025-11-27 22:17:17,363 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:17:23] 2025-11-27 22:17:17,363 | INFO     | [monitor] control thread has ended
[2025-11-27 17:17:23] 2025-11-27 22:17:22,167 | INFO     | all workflow threads have been joined
[2025-11-27 17:17:23] 2025-11-27 22:17:22,167 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:17:23] 2025-11-27 22:17:22,167 | INFO     | traces error code: 0
[2025-11-27 17:17:23] 2025-11-27 22:17:22,168 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:17:23] 2025-11-27 22:17:22,589 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:17:23] 2025-11-27 22:17:22,594 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:17:23] 2025-11-27 22:17:22,596 [wrapper] pilotpid: 2454316
[2025-11-27 17:17:23] 2025-11-27 22:17:22,598 [wrapper] Pilot exit status: 0
[2025-11-27 17:17:23] 2025-11-27 22:17:22,606 [wrapper] pandaids: 6893851188
[2025-11-27 17:17:23] 2025-11-27 22:17:22,671 [wrapper] cleanup supervisor_pilot  206716 2454317
[2025-11-27 17:17:23] 2025-11-27 22:17:22,674 [wrapper] Test setup, not cleaning
[2025-11-27 17:17:23] 2025-11-27 22:17:22,677 [wrapper] apfmon messages muted
[2025-11-27 17:17:23] 2025-11-27 22:17:22,696 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:17:23] 2025-11-27 22:17:22,699 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:17:23]  *** Error codes and diagnostics ***
[2025-11-27 17:17:23]     "exeErrorCode": 0,
[2025-11-27 17:17:23]     "exeErrorDiag": "",
[2025-11-27 17:17:23]     "pilotErrorCode": 0,
[2025-11-27 17:17:23]     "pilotErrorDiag": "",
[2025-11-27 17:17:23]  *** Listing of results directory ***
[2025-11-27 17:17:23] total 1344372
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 20 06:09 pilot3.tar.gz
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 20 06:36 queuedata.json
[2025-11-27 17:17:23] -rwx------. 1 boincer umatlas     36292 Nov 20 06:37 runpilot2-wrapper.sh
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:17:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:02 run_atlas
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:02 job.xml
[2025-11-27 17:17:23] -rw-r--r--. 2 boincer umatlas 410876284 Nov 26 00:02 EVNT.47493127._000351.pool.root.1
[2025-11-27 17:17:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-27 17:17:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:02 shared
[2025-11-27 17:17:23] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:02 input.tar.gz
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:02 boinc_lockfile
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:02 pandaJob.out
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas        57 Nov 26 00:02 setup.sh.local
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-27 17:17:23] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:02 boinc_task_state.xml
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas      6903 Nov 27 17:12 init_data.xml
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas 918650090 Nov 27 17:15 HITS.47523449._003503.pool.root.1
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas      1076 Nov 27 17:16 memory_monitor_summary.json
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:16 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas   3156752 Nov 27 17:16 log.47523449._003503.job.log.tgz.1
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas      8619 Nov 27 17:16 heartbeat.json
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas        95 Nov 27 17:17 pilot_heartbeat.json
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:17 boinc_mmap_file
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:17 wrapper_checkpoint.txt
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas      4824 Nov 27 17:17 pilotlog.txt
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas  18436547 Nov 27 17:17 log.47523449._003503.job.log.1
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas       353 Nov 27 17:17 output.list
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:17 runtime_log
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas  21616640 Nov 27 17:17 result.tar.gz
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas      9344 Nov 27 17:17 runtime_log.err
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas       667 Nov 27 17:17 9weKDmZ9Hg8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmLYGKDmOS25Vm.diag
[2025-11-27 17:17:23] -rw-r--r--. 1 boincer umatlas     16449 Nov 27 17:17 stderr.txt
[2025-11-27 17:17:23] HITS file was successfully produced:
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas 918650090 Nov 27 17:15 shared/HITS.pool.root.1
[2025-11-27 17:17:23]  *** Contents of shared directory: ***
[2025-11-27 17:17:23] total 1320084
[2025-11-27 17:17:23] -rw-r--r--. 2 boincer umatlas 410876284 Nov 26 00:02 ATLAS.root_0
[2025-11-27 17:17:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-27 17:17:23] -rw-r--r--. 2 boincer umatlas    590103 Nov 26 00:02 input.tar.gz
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas 918650090 Nov 27 17:15 HITS.pool.root.1
[2025-11-27 17:17:23] -rw-------. 1 boincer umatlas  21616640 Nov 27 17:17 result.tar.gz
17:17:24 (2442250): run_atlas exited; CPU time 205704.290502
17:17:24 (2442250): called boinc_finish(0)

</stderr_txt>
]]>

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