Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:31 (127109): wrapper (7.7.26015): starting
00:01:31 (127109): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:31] Arguments: --nthreads 9
[2025-11-26 00:01:31] Threads: 9
[2025-11-26 00:01:31] Checking for CVMFS
[2025-11-26 00:01:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:32] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:32] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:33] 2.13.3.0 12130 27907 345864 153309 2 105 37712275 40960001 17225 16776704 0 92431746 99.651 81799205 36226 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:33] CVMFS is ok
[2025-11-26 00:01:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:33] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:33] Checking for apptainer binary...
[2025-11-26 00:01:33] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:33] Running /usr/bin/apptainer --version
[2025-11-26 00:01:34] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:34] c6-5-7-4.aglt2.org
[2025-11-26 00:01:34] apptainer works
[2025-11-26 00:01:34] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:34] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:34] Starting ATLAS job with PandaID=6896715494
[2025-11-26 00:01:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:14:10]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:14:10] 2025-11-27 05:12:44,262 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:14:10] 2025-11-27 05:12:44,384 | INFO     | time since job start (86986s) is within the limit (172800.0s)
[2025-11-27 00:14:10] 2025-11-27 05:12:46,394 | INFO     | time since job start (86988s) is within the limit (172800.0s)
[2025-11-27 00:14:10] 2025-11-27 05:12:46,855 | INFO     | monitor loop #5147: job 0:6896715494 is in state 'finished'
[2025-11-27 00:14:10] 2025-11-27 05:12:46,855 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:14:10] 2025-11-27 05:12:48,407 | INFO     | time since job start (86990s) is within the limit (172800.0s)
[2025-11-27 00:14:10] 2025-11-27 05:12:49,392 | INFO     | monitor loop #5148: job 0:6896715494 is in state 'finished'
[2025-11-27 00:14:10] 2025-11-27 05:12:49,392 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:14:10] 2025-11-27 05:12:50,413 | INFO     | time since job start (86992s) is within the limit (172800.0s)
[2025-11-27 00:14:10] 2025-11-27 05:12:51,917 | INFO     | monitor loop #5149: job 0:6896715494 is in state 'finished'
[2025-11-27 00:14:10] 2025-11-27 05:12:51,917 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:14:10] 2025-11-27 05:12:51,945 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 00:14:10] 2025-11-27 05:12:52,279 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2769.234839285715
[2025-11-27 00:14:10] 2025-11-27 05:12:52,615 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6896715494/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:14:10] 2025-11-27 05:12:52,616 | INFO     | extracted standard info from prmon json
[2025-11-27 00:14:10] 2025-11-27 05:12:52,616 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:14:10] 2025-11-27 05:12:52,655 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:14:10] 2025-11-27 05:12:53,001 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:14:10] 2025-11-27 05:12:53,003 | INFO     | sum of square deviations: 891751275215.7456
[2025-11-27 00:14:10] 2025-11-27 05:12:53,065 | INFO     | sum of deviations: 6807103478834.704
[2025-11-27 00:14:10] 2025-11-27 05:12:53,065 | INFO     | mean x: 1764176919.092827
[2025-11-27 00:14:10] 2025-11-27 05:12:53,066 | INFO     | mean y: 3039392.911392405
[2025-11-27 00:14:10] 2025-11-27 05:12:53,066 | INFO     | intersect: -13463647089.069017
[2025-11-27 00:14:10] 2025-11-27 05:12:53,067 | INFO     | chi2: 18.789843366814523
[2025-11-27 00:14:10] 2025-11-27 05:12:53,069 | INFO     | sum of square deviations: 882381082037.4054
[2025-11-27 00:14:10] 2025-11-27 05:12:53,242 | INFO     | sum of deviations: 7302100556137.333
[2025-11-27 00:14:10] 2025-11-27 05:12:53,258 | INFO     | mean x: 1764176766.609033
[2025-11-27 00:14:10] 2025-11-27 05:12:53,258 | INFO     | mean y: 3047446.8327452363
[2025-11-27 00:14:10] 2025-11-27 05:12:53,258 | INFO     | intersect: -14596309237.963326
[2025-11-27 00:14:10] 2025-11-27 05:12:53,264 | INFO     | chi2: 15.681798851565537
[2025-11-27 00:14:10] 2025-11-27 05:12:53,265 | INFO     | current chi2=15.681798851565537 (change=16.54108794082991 %)
[2025-11-27 00:14:10] 2025-11-27 05:12:53,265 | INFO     | right removable region: 1416
[2025-11-27 00:14:10] 2025-11-27 05:12:53,295 | INFO     | sum of square deviations: 882377098127.4042
[2025-11-27 00:14:10] 2025-11-27 05:12:54,373 | INFO     | sum of deviations: 6184437678414.982
[2025-11-27 00:14:10] 2025-11-27 05:12:54,374 | INFO     | mean x: 1764177071.609033
[2025-11-27 00:14:10] 2025-11-27 05:12:54,374 | INFO     | mean y: 3049522.595624559
[2025-11-27 00:14:10] 2025-11-27 05:12:54,374 | INFO     | intersect: -12361780861.385374
[2025-11-27 00:14:10] 2025-11-27 05:12:54,385 | INFO     | chi2: 14.294905404455271
[2025-11-27 00:14:10] 2025-11-27 05:12:54,385 | INFO     | current chi2=14.294905404455271 (change=23.922168347065295 %)
[2025-11-27 00:14:10] 2025-11-27 05:12:54,385 | INFO     | left removable region: 10
[2025-11-27 00:14:10] 2025-11-27 05:12:54,413 | INFO     | sum of square deviations: 861990358682.4017
[2025-11-27 00:14:10] 2025-11-27 05:12:54,658 | INFO     | monitor loop #5150: job 0:6896715494 is in state 'finished'
[2025-11-27 00:14:10] 2025-11-27 05:12:54,658 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:14:10] 2025-11-27 05:12:55,591 | INFO     | sum of deviations: 6222659939571.877
[2025-11-27 00:14:10] 2025-11-27 05:12:55,591 | INFO     | mean x: 1764177041.1450925
[2025-11-27 00:14:10] 2025-11-27 05:12:55,591 | INFO     | mean y: 3068279.9957325747
[2025-11-27 00:14:10] 2025-11-27 05:12:55,591 | INFO     | intersect: -12732426600.743164
[2025-11-27 00:14:10] 2025-11-27 05:12:55,736 | INFO     | chi2: 7.203767537850628
[2025-11-27 00:14:10] 2025-11-27 05:12:55,737 | INFO     | current memory leak: 7.22 B/s (using 1406 data points, chi2=7.20)
[2025-11-27 00:14:10] 2025-11-27 05:12:55,780 | INFO     | could have reported an average CPU frequency of 2910 MHz (51 samples)
[2025-11-27 00:14:10] 2025-11-27 05:12:55,781 | INFO     | ..............................
[2025-11-27 00:14:10] 2025-11-27 05:12:55,781 | INFO     | . Timing measurements:
[2025-11-27 00:14:10] 2025-11-27 05:12:55,781 | INFO     | . get job = 0 s
[2025-11-27 00:14:10] 2025-11-27 05:12:55,781 | INFO     | . initial setup = 7 s
[2025-11-27 00:14:10] 2025-11-27 05:12:55,781 | INFO     | . payload setup = 68 s
[2025-11-27 00:14:10] 2025-11-27 05:12:55,781 | INFO     | . stage-in = 0 s
[2025-11-27 00:14:10] 2025-11-27 05:12:55,781 | INFO     | . payload execution = 86770 s
[2025-11-27 00:14:10] 2025-11-27 05:12:55,781 | INFO     | . stage-out = 14 s
[2025-11-27 00:14:10] 2025-11-27 05:12:55,781 | INFO     | . log creation = 2 s
[2025-11-27 00:14:10] 2025-11-27 05:12:55,781 | INFO     | ..............................
[2025-11-27 00:14:10] 2025-11-27 05:12:57,494 | INFO     | 
[2025-11-27 00:14:10] 2025-11-27 05:12:57,494 | INFO     | job summary report
[2025-11-27 00:14:10] 2025-11-27 05:12:57,494 | INFO     | --------------------------------------------------
[2025-11-27 00:14:10] 2025-11-27 05:12:57,494 | INFO     | PanDA job id: 6896715494
[2025-11-27 00:14:10] 2025-11-27 05:12:57,494 | INFO     | task id: 47556161
[2025-11-27 00:14:10] 2025-11-27 05:12:57,494 | INFO     | errors: (none)
[2025-11-27 00:14:10] 2025-11-27 05:12:57,494 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | pilot state: finished 
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | transexitcode: 0
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | exeerrorcode: 0
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | exeerrordiag: 
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | exitcode: 0
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | exitmsg: OK
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | cpuconsumptiontime: 236164 s
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | nevents: 1000
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | neventsw: 0
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | pid: 167387
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | pgrp: 167387
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | corecount: 9
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | event service: False
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | sizes: {0: 2283430, 1: 2284115, 2: 2284143, 3: 2284314, 14: 2284342, 26: 2284370, 37: 2284526, 43: 2284816, 48: 2284844, 86844: 2349534, 86846: 2349533, 86861: 235
[2025-11-27 00:14:10] 2025-11-27 05:12:57,495 | INFO     | --------------------------------------------------
[2025-11-27 00:14:10] 2025-11-27 05:12:57,496 | INFO     | 
[2025-11-27 00:14:10] 2025-11-27 05:12:57,496 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 00:14:10] 2025-11-27 05:12:57,556 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,557 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,557 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,557 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,557 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,557 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,557 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,557 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,557 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,557 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,557 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,557 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,558 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,558 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,558 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,558 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,558 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:14:10] 2025-11-27 05:12:57,558 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,558 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:14:10] 2025-11-27 05:12:57,558 | INFO     | job 6896715494 has completed (purged errors)
[2025-11-27 00:14:10] 2025-11-27 05:12:57,559 | INFO     | overall cleanup function is called
[2025-11-27 00:14:10] 2025-11-27 05:12:58,737 | INFO     | --- collectZombieJob: --- 10, [167387]
[2025-11-27 00:14:10] 2025-11-27 05:12:58,737 | INFO     | zombie collector waiting for pid 167387
[2025-11-27 00:14:10] 2025-11-27 05:12:58,737 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:14:10] 2025-11-27 05:12:58,737 | INFO     | collected zombie processes
[2025-11-27 00:14:10] 2025-11-27 05:12:58,737 | INFO     | will attempt to kill all subprocesses of pid=167387
[2025-11-27 00:14:10] 2025-11-27 05:13:00,359 | INFO     | PID=137524 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 00:14:10] 2025-11-27 05:13:00,359 | INFO     | .. there are 26 such processes running
[2025-11-27 00:14:10] 2025-11-27 05:13:03,172 | INFO     | process IDs to be killed: [167387] (in reverse order)
[2025-11-27 00:14:10] 2025-11-27 05:13:03,688 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:14:10] 2025-11-27 05:13:03,821 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:14:10] 2025-11-27 05:13:03,952 | INFO     | did not find any defunct processes belonging to 167387
[2025-11-27 00:14:10] 2025-11-27 05:13:04,099 | INFO     | did not find any defunct processes belonging to 167387
[2025-11-27 00:14:10] 2025-11-27 05:13:04,135 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:14:10] 2025-11-27 05:13:04,135 | INFO     | ready for new job
[2025-11-27 00:14:10] 2025-11-27 05:13:04,136 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:14:10] 2025-11-27 05:13:04,187 | INFO     | ***************************************
[2025-11-27 00:14:10] 2025-11-27 05:13:04,187 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:14:10] 2025-11-27 05:13:04,187 | INFO     | ***************************************
[2025-11-27 00:14:10] 2025-11-27 05:13:04,187 | INFO     | 
[2025-11-27 00:14:10] 2025-11-27 05:13:04,190 | INFO     | architecture information:
[2025-11-27 00:14:10] 2025-11-27 05:13:04,236 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:14:10] 2025-11-27 05:13:04,409 | INFO     | cat /etc/os-release:
[2025-11-27 00:14:10] NAME="CentOS Linux"
[2025-11-27 00:14:10] VERSION="7 (Core)"
[2025-11-27 00:14:10] ID="centos"
[2025-11-27 00:14:10] ID_LIKE="rhel fedora"
[2025-11-27 00:14:10] VERSION_ID="7"
[2025-11-27 00:14:10] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:14:10] ANSI_COLOR="0;31"
[2025-11-27 00:14:10] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:14:10] HOME_URL="https://www.centos.org/"
[2025-11-27 00:14:10] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:14:10] 
[2025-11-27 00:14:10] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:14:10] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:14:10] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:14:10] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:14:10] 
[2025-11-27 00:14:10] 2025-11-27 05:13:04,410 | INFO     | ***************************************
[2025-11-27 00:14:10] 2025-11-27 05:13:04,914 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 00:14:10] 2025-11-27 05:13:05,165 | INFO     | sufficient remaining disk space (68507664384 B)
[2025-11-27 00:14:10] 2025-11-27 05:13:05,166 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:14:10] 2025-11-27 05:13:05,166 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:14:10] 2025-11-27 05:13:05,166 | INFO     | update_server=False
[2025-11-27 00:14:10] 2025-11-27 05:13:05,167 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:14:10] 2025-11-27 05:13:05,177 | INFO     | all data control threads have been joined
[2025-11-27 00:14:10] 2025-11-27 05:13:05,189 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:14:10] 2025-11-27 05:13:05,366 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 00:14:10] 2025-11-27 05:13:05,366 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 00:14:10] 2025-11-27 05:13:05,366 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:14:10] 2025-11-27 05:13:05,366 | INFO     | will abort loop
[2025-11-27 00:14:10] 2025-11-27 05:13:05,411 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:14:10] 2025-11-27 05:13:05,486 | INFO     | all job control threads have been joined
[2025-11-27 00:14:10] 2025-11-27 05:13:06,173 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:06,185 | INFO     | [data] control thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:06,375 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:06,396 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:06,408 | INFO     | all payload control threads have been joined
[2025-11-27 00:14:10] 2025-11-27 05:13:06,510 | INFO     | [job] control thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:06,529 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:14:10] 2025-11-27 05:13:06,905 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:07,201 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:07,213 | INFO     | [job] validate thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:07,251 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:07,257 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:07,264 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:07,416 | INFO     | [payload] control thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:07,474 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:07,474 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:07,535 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:09,482 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:14:10] 2025-11-27 05:13:34,121 | INFO     | PID=137524 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 00:14:10] 2025-11-27 05:13:34,121 | INFO     | .. there are 26 such processes running
[2025-11-27 00:14:10] 2025-11-27 05:13:34,121 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:14:10] 2025-11-27 05:13:34,121 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:14:10] 2025-11-27 05:13:34,123 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:14:10] 2025-11-27 05:13:39,485 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:14:10] 2025-11-27 05:13:40,056 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140446012663616)>', '<ExcThread(monitor, started 140445296359168)>']
[2025-11-27 00:14:10] 2025-11-27 05:13:40,235 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:14:10] 2025-11-27 05:13:40,235 | INFO     | [monitor] control thread has ended
[2025-11-27 00:14:10] 2025-11-27 05:13:45,086 | INFO     | all workflow threads have been joined
[2025-11-27 00:14:10] 2025-11-27 05:13:45,086 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:14:10] 2025-11-27 05:13:45,086 | INFO     | traces error code: 0
[2025-11-27 00:14:10] 2025-11-27 05:13:45,087 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:14:10] 2025-11-27 05:13:49,191 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:14:10] 2025-11-27 05:13:49,214 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:14:10] 2025-11-27 05:13:49,242 [wrapper] pilotpid: 137524
[2025-11-27 00:14:10] 2025-11-27 05:13:49,301 [wrapper] Pilot exit status: 0
[2025-11-27 00:14:10] 2025-11-27 05:13:49,498 [wrapper] pandaids: 6896715494
[2025-11-27 00:14:10] 2025-11-27 05:13:49,795 [wrapper] cleanup supervisor_pilot  115162 137526
[2025-11-27 00:14:10] 2025-11-27 05:13:49,873 [wrapper] Test setup, not cleaning
[2025-11-27 00:14:10] 2025-11-27 05:13:49,891 [wrapper] apfmon messages muted
[2025-11-27 00:14:10] 2025-11-27 05:13:49,919 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:14:10] 2025-11-27 05:13:49,943 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:14:10]  *** Error codes and diagnostics ***
[2025-11-27 00:14:10]     "exeErrorCode": 0,
[2025-11-27 00:14:10]     "exeErrorDiag": "",
[2025-11-27 00:14:10]     "pilotErrorCode": 0,
[2025-11-27 00:14:10]     "pilotErrorDiag": "",
[2025-11-27 00:14:10]  *** Listing of results directory ***
[2025-11-27 00:14:10] total 1330880
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:50 queuedata.json
[2025-11-27 00:14:10] -rwx------. 1 boincer umatlas     36292 Nov 25 01:54 runpilot2-wrapper.sh
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:14:10] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-27 00:14:10] -rw-r--r--. 2 boincer umatlas 410370176 Nov 26 00:01 EVNT.47483658._002129.pool.root.1
[2025-11-27 00:14:10] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 00:14:10] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-27 00:14:10] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 00:01 input.tar.gz
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 00:01 pandaJob.out
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-27 00:14:10] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas       533 Nov 26 23:52 boinc_task_state.xml
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas 921613085 Nov 27 00:10 HITS.47556161._001121.pool.root.1
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas      6841 Nov 27 00:11 init_data.xml
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas      1058 Nov 27 00:11 memory_monitor_summary.json
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas   1516240 Nov 27 00:12 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas   2567070 Nov 27 00:12 log.47556161._001121.job.log.tgz.1
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas      8620 Nov 27 00:12 heartbeat.json
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas        95 Nov 27 00:13 pilot_heartbeat.json
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas      5009 Nov 27 00:13 pilotlog.txt
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas  10889226 Nov 27 00:13 log.47556161._001121.job.log.1
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas       353 Nov 27 00:13 output.list
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas       620 Nov 27 00:13 runtime_log
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas  13475840 Nov 27 00:13 result.tar.gz
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 00:13 runtime_log.err
[2025-11-27 00:14:10] -rw-------. 1 boincer umatlas       660 Nov 27 00:13 PYkLDmG71h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxDMKDmYRmwVn.diag
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas        29 Nov 27 00:14 wrapper_checkpoint.txt
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 00:14 boinc_mmap_file
[2025-11-27 00:14:10] -rw-r--r--. 1 boincer umatlas     21627 Nov 27 00:14 stderr.txt
[2025-11-27 00:14:10] HITS file was successfully produced:
[2025-11-27 00:14:11] -rw-------. 1 boincer umatlas 921613085 Nov 27 00:10 shared/HITS.pool.root.1
[2025-11-27 00:14:11]  *** Contents of shared directory: ***
[2025-11-27 00:14:11] total 1314536
[2025-11-27 00:14:11] -rw-r--r--. 2 boincer umatlas 410370176 Nov 26 00:01 ATLAS.root_0
[2025-11-27 00:14:11] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 00:14:11] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 00:01 input.tar.gz
[2025-11-27 00:14:11] -rw-------. 1 boincer umatlas 921613085 Nov 27 00:10 HITS.pool.root.1
[2025-11-27 00:14:11] -rw-------. 1 boincer umatlas  13475840 Nov 27 00:13 result.tar.gz
00:14:12 (127109): run_atlas exited; CPU time 237820.272276
00:14:12 (127109): called boinc_finish(0)

</stderr_txt>
]]>

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