Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:57:19 (2510717): wrapper (7.7.26015): starting
20:57:19 (2510717): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 20:57:19] Arguments: --nthreads 8
[2025-11-26 20:57:19] Threads: 8
[2025-11-26 20:57:19] Checking for CVMFS
[2025-11-26 20:57:20] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 20:57:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 20:57:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 20:57:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 20:57:21] 2.13.3.0 11830 30724 355676 153342 2 277 23588067 32935937 40143 16776704 0 171554438 99.560 183837732 32809 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 20:57:21] CVMFS is ok
[2025-11-26 20:57:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 20:57:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 20:57:21] Further information can be found at the LHC@home message board.
[2025-11-26 20:57:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 20:57:21] Checking for apptainer binary...
[2025-11-26 20:57:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 20:57:21] Running /usr/bin/apptainer --version
[2025-11-26 20:57:21] apptainer version 1.4.4-1.el9
[2025-11-26 20:57:22] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 20:57:22] c6-8-25-1.aglt2.org
[2025-11-26 20:57:22] apptainer works
[2025-11-26 20:57:22] Set ATHENA_PROC_NUMBER=8
[2025-11-26 20:57:22] Set ATHENA_CORE_NUMBER=8
[2025-11-26 20:57:22] Starting ATLAS job with PandaID=6896714630
[2025-11-26 20:57:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:23:16]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:23:16] 2025-11-27 23:22:27,873 | INFO     | time since job start (77033s) is within the limit (172800.0s)
[2025-11-27 18:23:16] 2025-11-27 23:22:29,399 | INFO     | monitor loop #4215: job 0:6896714630 is in state 'finished'
[2025-11-27 18:23:16] 2025-11-27 23:22:29,400 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:23:16] 2025-11-27 23:22:29,882 | INFO     | time since job start (77035s) is within the limit (172800.0s)
[2025-11-27 18:23:16] 2025-11-27 23:22:31,907 | INFO     | monitor loop #4216: job 0:6896714630 is in state 'finished'
[2025-11-27 18:23:16] 2025-11-27 23:22:31,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:23:16] 2025-11-27 23:22:31,923 | INFO     | time since job start (77037s) is within the limit (172800.0s)
[2025-11-27 18:23:16] 2025-11-27 23:22:33,935 | INFO     | time since job start (77039s) is within the limit (172800.0s)
[2025-11-27 18:23:16] 2025-11-27 23:22:34,412 | INFO     | monitor loop #4217: job 0:6896714630 is in state 'finished'
[2025-11-27 18:23:16] 2025-11-27 23:22:34,413 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:23:16] 2025-11-27 23:22:35,941 | INFO     | time since job start (77041s) is within the limit (172800.0s)
[2025-11-27 18:23:16] 2025-11-27 23:22:36,917 | INFO     | monitor loop #4218: job 0:6896714630 is in state 'finished'
[2025-11-27 18:23:16] 2025-11-27 23:22:36,918 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:23:16] 2025-11-27 23:22:37,958 | INFO     | time since job start (77043s) is within the limit (172800.0s)
[2025-11-27 18:23:16] 2025-11-27 23:22:39,205 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 18:23:16] 2025-11-27 23:22:39,216 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2558.436822916666
[2025-11-27 18:23:16] 2025-11-27 23:22:39,259 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896714630/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:23:16] 2025-11-27 23:22:39,260 | INFO     | extracted standard info from prmon json
[2025-11-27 18:23:16] 2025-11-27 23:22:39,261 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:23:16] 2025-11-27 23:22:39,261 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:23:16] 2025-11-27 23:22:39,311 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:23:16] 2025-11-27 23:22:39,315 | INFO     | sum of square deviations: 620293023765.0635
[2025-11-27 18:23:16] 2025-11-27 23:22:39,354 | INFO     | sum of deviations: 3479958268782.3687
[2025-11-27 18:23:16] 2025-11-27 23:22:39,354 | INFO     | mean x: 1764247260.579365
[2025-11-27 18:23:16] 2025-11-27 23:22:39,355 | INFO     | mean y: 2933140.9063492063
[2025-11-27 18:23:16] 2025-11-27 23:22:39,355 | INFO     | intersect: -9894819384.76956
[2025-11-27 18:23:16] 2025-11-27 23:22:39,356 | INFO     | chi2: 19.395620992075834
[2025-11-27 18:23:16] 2025-11-27 23:22:39,358 | INFO     | sum of square deviations: 612938764008.3586
[2025-11-27 18:23:16] 2025-11-27 23:22:39,390 | INFO     | sum of deviations: 3901100751427.106
[2025-11-27 18:23:16] 2025-11-27 23:22:39,391 | INFO     | mean x: 1764247108.0876493
[2025-11-27 18:23:16] 2025-11-27 23:22:39,391 | INFO     | mean y: 2941871.5354581675
[2025-11-27 18:23:16] 2025-11-27 23:22:39,391 | INFO     | intersect: -11225758486.808937
[2025-11-27 18:23:16] 2025-11-27 23:22:39,393 | INFO     | chi2: 16.223075184738946
[2025-11-27 18:23:16] 2025-11-27 23:22:39,393 | INFO     | current chi2=16.223075184738946 (change=16.35702104425038 %)
[2025-11-27 18:23:16] 2025-11-27 23:22:39,393 | INFO     | right removable region: 1254
[2025-11-27 18:23:16] 2025-11-27 23:22:39,395 | INFO     | sum of square deviations: 612937165808.3578
[2025-11-27 18:23:16] 2025-11-27 23:22:39,428 | INFO     | sum of deviations: 2975448648935.407
[2025-11-27 18:23:16] 2025-11-27 23:22:39,428 | INFO     | mean x: 1764247413.0876493
[2025-11-27 18:23:16] 2025-11-27 23:22:39,428 | INFO     | mean y: 2943599.2326693228
[2025-11-27 18:23:16] 2025-11-27 23:22:39,428 | INFO     | intersect: -8561437669.337249
[2025-11-27 18:23:16] 2025-11-27 23:22:39,430 | INFO     | chi2: 15.47912223711336
[2025-11-27 18:23:16] 2025-11-27 23:22:39,430 | INFO     | current chi2=15.47912223711336 (change=20.192695849040238 %)
[2025-11-27 18:23:16] 2025-11-27 23:22:39,430 | INFO     | left removable region: 10
[2025-11-27 18:23:16] 2025-11-27 23:22:39,432 | INFO     | sum of square deviations: 596961342314.9935
[2025-11-27 18:23:16] 2025-11-27 23:22:39,459 | INFO     | monitor loop #4219: job 0:6896714630 is in state 'finished'
[2025-11-27 18:23:16] 2025-11-27 23:22:39,460 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:23:16] 2025-11-27 23:22:39,486 | INFO     | sum of deviations: 3065237279893.9185
[2025-11-27 18:23:16] 2025-11-27 23:22:39,491 | INFO     | mean x: 1764247382.6061094
[2025-11-27 18:23:16] 2025-11-27 23:22:39,491 | INFO     | mean y: 2962691.852893891
[2025-11-27 18:23:16] 2025-11-27 23:22:39,491 | INFO     | intersect: -9055977083.28921
[2025-11-27 18:23:16] 2025-11-27 23:22:39,492 | INFO     | chi2: 9.20858173431771
[2025-11-27 18:23:16] 2025-11-27 23:22:39,493 | INFO     | current memory leak: 5.13 B/s (using 1244 data points, chi2=9.21)
[2025-11-27 18:23:16] 2025-11-27 23:22:39,494 | INFO     | could have reported an average CPU frequency of 2566 MHz (45 samples)
[2025-11-27 18:23:16] 2025-11-27 23:22:39,498 | INFO     | ..............................
[2025-11-27 18:23:16] 2025-11-27 23:22:39,499 | INFO     | . Timing measurements:
[2025-11-27 18:23:16] 2025-11-27 23:22:39,499 | INFO     | . get job = 0 s
[2025-11-27 18:23:16] 2025-11-27 23:22:39,499 | INFO     | . initial setup = 6 s
[2025-11-27 18:23:16] 2025-11-27 23:22:39,499 | INFO     | . payload setup = 43 s
[2025-11-27 18:23:16] 2025-11-27 23:22:39,499 | INFO     | . stage-in = 0 s
[2025-11-27 18:23:16] 2025-11-27 23:22:39,499 | INFO     | . payload execution = 76878 s
[2025-11-27 18:23:16] 2025-11-27 23:22:39,499 | INFO     | . stage-out = 12 s
[2025-11-27 18:23:16] 2025-11-27 23:22:39,499 | INFO     | . log creation = 2 s
[2025-11-27 18:23:16] 2025-11-27 23:22:39,499 | INFO     | ..............................
[2025-11-27 18:23:16] 2025-11-27 23:22:39,720 | INFO     | 
[2025-11-27 18:23:16] 2025-11-27 23:22:39,720 | INFO     | job summary report
[2025-11-27 18:23:16] 2025-11-27 23:22:39,720 | INFO     | --------------------------------------------------
[2025-11-27 18:23:16] 2025-11-27 23:22:39,720 | INFO     | PanDA job id: 6896714630
[2025-11-27 18:23:16] 2025-11-27 23:22:39,720 | INFO     | task id: 47556161
[2025-11-27 18:23:16] 2025-11-27 23:22:39,720 | INFO     | errors: (none)
[2025-11-27 18:23:16] 2025-11-27 23:22:39,720 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:23:16] 2025-11-27 23:22:39,720 | INFO     | pilot state: finished 
[2025-11-27 18:23:16] 2025-11-27 23:22:39,720 | INFO     | transexitcode: 0
[2025-11-27 18:23:16] 2025-11-27 23:22:39,720 | INFO     | exeerrorcode: 0
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | exeerrordiag: 
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | exitcode: 0
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | exitmsg: OK
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | cpuconsumptiontime: 269618 s
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | nevents: 1000
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | neventsw: 0
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | pid: 2533736
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | pgrp: 2533736
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | corecount: 8
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | event service: False
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | sizes: {0: 2284036, 1: 2284291, 2: 2284291, 3: 2284319, 14: 2284347, 25: 2284375, 33: 2284793, 35: 2284849, 76926: 2344205, 76927: 2344204, 76939: 2353254, 76940: 
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | --------------------------------------------------
[2025-11-27 18:23:16] 2025-11-27 23:22:39,721 | INFO     | 
[2025-11-27 18:23:16] 2025-11-27 23:22:39,722 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-27 18:23:16] 2025-11-27 23:22:39,818 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,819 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,819 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,819 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,819 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,819 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,819 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,819 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,819 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,819 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,820 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,820 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,820 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,820 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,820 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,820 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,820 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,820 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:23:16] 2025-11-27 23:22:39,820 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,820 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:23:16] 2025-11-27 23:22:39,820 | INFO     | job 6896714630 has completed (purged errors)
[2025-11-27 18:23:16] 2025-11-27 23:22:39,821 | INFO     | overall cleanup function is called
[2025-11-27 18:23:16] 2025-11-27 23:22:40,841 | INFO     | --- collectZombieJob: --- 10, [2533736]
[2025-11-27 18:23:16] 2025-11-27 23:22:40,846 | INFO     | zombie collector waiting for pid 2533736
[2025-11-27 18:23:16] 2025-11-27 23:22:40,846 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:23:16] 2025-11-27 23:22:40,846 | INFO     | collected zombie processes
[2025-11-27 18:23:16] 2025-11-27 23:22:40,846 | INFO     | will attempt to kill all subprocesses of pid=2533736
[2025-11-27 18:23:16] 2025-11-27 23:22:43,991 | INFO     | process IDs to be killed: [2533736] (in reverse order)
[2025-11-27 18:23:16] 2025-11-27 23:22:44,395 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:23:16] 2025-11-27 23:22:44,395 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:23:16] 2025-11-27 23:22:44,420 | INFO     | did not find any defunct processes belonging to 2533736
[2025-11-27 18:23:16] 2025-11-27 23:22:44,446 | INFO     | did not find any defunct processes belonging to 2533736
[2025-11-27 18:23:16] 2025-11-27 23:22:44,470 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:23:16] 2025-11-27 23:22:44,471 | INFO     | ready for new job
[2025-11-27 18:23:16] 2025-11-27 23:22:44,471 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:23:16] 2025-11-27 23:22:44,481 | INFO     | ***************************************
[2025-11-27 18:23:16] 2025-11-27 23:22:44,481 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:23:16] 2025-11-27 23:22:44,481 | INFO     | ***************************************
[2025-11-27 18:23:16] 2025-11-27 23:22:44,481 | INFO     | 
[2025-11-27 18:23:16] 2025-11-27 23:22:44,496 | INFO     | architecture information:
[2025-11-27 18:23:16] 2025-11-27 23:22:44,500 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:23:16] 2025-11-27 23:22:44,583 | INFO     | cat /etc/os-release:
[2025-11-27 18:23:16] NAME="CentOS Linux"
[2025-11-27 18:23:16] VERSION="7 (Core)"
[2025-11-27 18:23:16] ID="centos"
[2025-11-27 18:23:16] ID_LIKE="rhel fedora"
[2025-11-27 18:23:16] VERSION_ID="7"
[2025-11-27 18:23:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:23:16] ANSI_COLOR="0;31"
[2025-11-27 18:23:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:23:16] HOME_URL="https://www.centos.org/"
[2025-11-27 18:23:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:23:16] 
[2025-11-27 18:23:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:23:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:23:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:23:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:23:16] 
[2025-11-27 18:23:16] 2025-11-27 23:22:44,583 | INFO     | ***************************************
[2025-11-27 18:23:16] 2025-11-27 23:22:45,086 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-27 18:23:16] 2025-11-27 23:22:45,133 | INFO     | sufficient remaining disk space (66148368384 B)
[2025-11-27 18:23:16] 2025-11-27 23:22:45,133 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:23:16] 2025-11-27 23:22:45,133 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:23:16] 2025-11-27 23:22:45,133 | INFO     | update_server=False
[2025-11-27 18:23:16] 2025-11-27 23:22:45,134 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:23:16] 2025-11-27 23:22:45,135 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:23:16] 2025-11-27 23:22:45,137 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:23:16] 2025-11-27 23:22:45,176 | INFO     | all data control threads have been joined
[2025-11-27 18:23:16] 2025-11-27 23:22:45,327 | INFO     | all payload control threads have been joined
[2025-11-27 18:23:16] 2025-11-27 23:22:45,549 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:23:16] 2025-11-27 23:22:45,550 | INFO     | aborting loop
[2025-11-27 18:23:16] 2025-11-27 23:22:45,792 | INFO     | all job control threads have been joined
[2025-11-27 18:23:16] 2025-11-27 23:22:46,139 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:46,141 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:46,147 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:46,183 | INFO     | [data] control thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:46,263 | INFO     | [job] validate thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:46,333 | INFO     | [payload] control thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:46,555 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:46,729 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:46,730 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:46,811 | INFO     | [job] control thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:46,954 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:23:16] 2025-11-27 23:22:47,023 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:47,144 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:47,496 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:47,540 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:47,639 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:50,978 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:23:16] 2025-11-27 23:22:54,722 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:23:16] 2025-11-27 23:22:55,227 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139878067279680)>', '<ExcThread(monitor, started 139877714732800)>']
[2025-11-27 18:23:16] 2025-11-27 23:23:00,253 | INFO     | all workflow threads have been joined
[2025-11-27 18:23:16] 2025-11-27 23:23:00,254 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:23:16] 2025-11-27 23:23:00,254 | INFO     | traces error code: 0
[2025-11-27 18:23:16] 2025-11-27 23:23:00,254 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:23:16] 2025-11-27 23:23:13,860 | INFO     | PID=2515867 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:23:16] 2025-11-27 23:23:13,865 | INFO     | .. there are 53 such processes running
[2025-11-27 18:23:16] 2025-11-27 23:23:13,866 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:23:16] 2025-11-27 23:23:13,867 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:23:16] 2025-11-27 23:23:13,867 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:23:16] 2025-11-27 23:23:13,867 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:23:16] 2025-11-27 23:23:13,867 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 18:23:16] 2025-11-27 23:23:13,867 | INFO     | [monitor] control thread has ended
[2025-11-27 18:23:16] 2025-11-27 23:23:15,266 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:23:16] 2025-11-27 23:23:15,284 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:23:16] 2025-11-27 23:23:15,301 [wrapper] pilotpid: 2515867
[2025-11-27 18:23:16] 2025-11-27 23:23:15,333 [wrapper] Pilot exit status: 0
[2025-11-27 18:23:16] 2025-11-27 23:23:15,465 [wrapper] pandaids: 6896714630
[2025-11-27 18:23:16] 2025-11-27 23:23:15,850 [wrapper] cleanup supervisor_pilot   53263 2515868
[2025-11-27 18:23:16] 2025-11-27 23:23:15,870 [wrapper] Test setup, not cleaning
[2025-11-27 18:23:16] 2025-11-27 23:23:15,903 [wrapper] apfmon messages muted
[2025-11-27 18:23:16] 2025-11-27 23:23:15,957 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:23:16] 2025-11-27 23:23:16,028 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:23:16]  *** Error codes and diagnostics ***
[2025-11-27 18:23:16]     "exeErrorCode": 0,
[2025-11-27 18:23:16]     "exeErrorDiag": "",
[2025-11-27 18:23:16]     "pilotErrorCode": 0,
[2025-11-27 18:23:16]     "pilotErrorDiag": "",
[2025-11-27 18:23:16]  *** Listing of results directory ***
[2025-11-27 18:23:16] total 1317328
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:46 queuedata.json
[2025-11-27 18:23:16] -rwx------. 1 boincer umatlas     36292 Nov 25 01:49 runpilot2-wrapper.sh
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas       100 Nov 26 20:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:23:16] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 20:57 run_atlas
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas       105 Nov 26 20:57 job.xml
[2025-11-27 18:23:16] -rw-r--r--. 2 boincer umatlas 408626840 Nov 26 20:57 EVNT.47483658._002126.pool.root.1
[2025-11-27 18:23:16] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 20:57 start_atlas.sh
[2025-11-27 18:23:16] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 20:57 shared
[2025-11-27 18:23:16] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 20:57 input.tar.gz
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas         0 Nov 26 20:57 boinc_lockfile
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 20:57 pandaJob.out
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas        57 Nov 26 20:57 setup.sh.local
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas    991530 Nov 26 20:58 agis_schedconf.cvmfs.json
[2025-11-27 18:23:16] drwx------. 5 boincer umatlas      4096 Nov 26 20:58 pilot3
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:58 boinc_task_state.xml
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas      6878 Nov 27 18:20 init_data.xml
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas 913371883 Nov 27 18:20 HITS.47556161._001093.pool.root.1
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas      1059 Nov 27 18:21 memory_monitor_summary.json
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:21 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas   2306471 Nov 27 18:21 log.47556161._001093.job.log.tgz.1
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas      8619 Nov 27 18:22 heartbeat.json
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas        95 Nov 27 18:23 pilot_heartbeat.json
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas       893 Nov 27 18:23 pilotlog.txt
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas   9204969 Nov 27 18:23 log.47556161._001093.job.log.1
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas       353 Nov 27 18:23 output.list
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:23 boinc_mmap_file
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas        29 Nov 27 18:23 wrapper_checkpoint.txt
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:23 runtime_log
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas  11530240 Nov 27 18:23 result.tar.gz
[2025-11-27 18:23:16] -rw-------. 1 boincer umatlas       661 Nov 27 18:23 ZCYNDmU21h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjDMKDmnxe82m.diag
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 18:23 runtime_log.err
[2025-11-27 18:23:16] -rw-r--r--. 1 boincer umatlas     21787 Nov 27 18:23 stderr.txt
[2025-11-27 18:23:17] HITS file was successfully produced:
[2025-11-27 18:23:17] -rw-------. 1 boincer umatlas 913371883 Nov 27 18:20 shared/HITS.pool.root.1
[2025-11-27 18:23:17]  *** Contents of shared directory: ***
[2025-11-27 18:23:17] total 1302884
[2025-11-27 18:23:17] -rw-r--r--. 2 boincer umatlas 408626840 Nov 26 20:57 ATLAS.root_0
[2025-11-27 18:23:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 20:57 start_atlas.sh
[2025-11-27 18:23:17] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 20:57 input.tar.gz
[2025-11-27 18:23:17] -rw-------. 1 boincer umatlas 913371883 Nov 27 18:20 HITS.pool.root.1
[2025-11-27 18:23:17] -rw-------. 1 boincer umatlas  11530240 Nov 27 18:23 result.tar.gz
18:23:19 (2510717): run_atlas exited; CPU time 273031.778298
18:23:19 (2510717): called boinc_finish(0)

</stderr_txt>
]]>

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