Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:30 (1407514): wrapper (7.7.26015): starting
00:01:30 (1407514): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:01:30] Arguments: --nthreads 8
[2025-11-26 00:01:30] Threads: 8
[2025-11-26 00:01:30] Checking for CVMFS
[2025-11-26 00:01:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:32] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:32] 2.13.3.0 7489 29603 382272 153309 2 621 24448718 32935937 23260 16776704 0 190348565 99.645 182331080 41204 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:32] CVMFS is ok
[2025-11-26 00:01:32] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:32] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:32] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:32] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:32] Checking for apptainer binary...
[2025-11-26 00:01:32] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:32] Running /usr/bin/apptainer --version
[2025-11-26 00:01:32] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:32] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:32] c7-13-32.aglt2.org
[2025-11-26 00:01:32] apptainer works
[2025-11-26 00:01:32] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:01:32] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:01:32] Starting ATLAS job with PandaID=6895674546
[2025-11-26 00:01:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:16:42]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:16:42] 2025-11-26 19:15:47,209 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 14:16:42] 2025-11-26 19:15:47,213 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3290.3075624999997
[2025-11-26 14:16:42] 2025-11-26 19:15:47,223 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6895674546/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 14:16:42] 2025-11-26 19:15:47,223 | INFO     | extracted standard info from prmon json
[2025-11-26 14:16:42] 2025-11-26 19:15:47,223 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:16:42] 2025-11-26 19:15:47,224 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:16:42] 2025-11-26 19:15:47,234 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:16:42] 2025-11-26 19:15:47,235 | INFO     | sum of square deviations: 183131584802.47427
[2025-11-26 14:16:42] 2025-11-26 19:15:47,247 | INFO     | sum of deviations: 1237895749382.969
[2025-11-26 14:16:42] 2025-11-26 19:15:47,248 | INFO     | mean x: 1764158960.97497
[2025-11-26 14:16:42] 2025-11-26 19:15:47,248 | INFO     | mean y: 2876302.8081048867
[2025-11-26 14:16:42] 2025-11-26 19:15:47,248 | INFO     | intersect: -11922127684.8016
[2025-11-26 14:16:42] 2025-11-26 19:15:47,248 | INFO     | chi2: 5.292946395393239
[2025-11-26 14:16:42] 2025-11-26 19:15:47,250 | INFO     | sum of square deviations: 179877452400.35498
[2025-11-26 14:16:42] 2025-11-26 19:15:47,266 | INFO     | sum of deviations: 1496683890418.6064
[2025-11-26 14:16:42] 2025-11-26 19:15:47,266 | INFO     | mean x: 1764158808.4868104
[2025-11-26 14:16:42] 2025-11-26 19:15:47,266 | INFO     | mean y: 2888422.055155875
[2025-11-26 14:16:42] 2025-11-26 19:15:47,266 | INFO     | intersect: -14675927814.042938
[2025-11-26 14:16:42] 2025-11-26 19:15:47,267 | INFO     | chi2: 2.509974661975205
[2025-11-26 14:16:42] 2025-11-26 19:15:47,267 | INFO     | current chi2=2.509974661975205 (change=52.57887621609425 %)
[2025-11-26 14:16:42] 2025-11-26 19:15:47,308 | INFO     | sum of square deviations: 176661959175.98074
[2025-11-26 14:16:42] 2025-11-26 19:15:47,329 | INFO     | sum of deviations: 1511075824707.8643
[2025-11-26 14:16:42] 2025-11-26 19:15:47,329 | INFO     | mean x: 1764158655.995175
[2025-11-26 14:16:42] 2025-11-26 19:15:47,329 | INFO     | mean y: 2889097.7165259346
[2025-11-26 14:16:42] 2025-11-26 19:15:47,329 | INFO     | intersect: -15086819566.54621
[2025-11-26 14:16:42] 2025-11-26 19:15:47,330 | INFO     | chi2: 2.3831506331065833
[2025-11-26 14:16:42] 2025-11-26 19:15:47,330 | INFO     | current chi2=2.3831506331065833 (change=5.052801161300114 %)
[2025-11-26 14:16:42] 2025-11-26 19:15:47,330 | INFO     | right removable region: 828
[2025-11-26 14:16:42] 2025-11-26 19:15:47,331 | INFO     | sum of square deviations: 179876645498.23022
[2025-11-26 14:16:42] 2025-11-26 19:15:47,342 | INFO     | sum of deviations: 1024908623991.4899
[2025-11-26 14:16:42] 2025-11-26 19:15:47,342 | INFO     | mean x: 1764159113.4820144
[2025-11-26 14:16:42] 2025-11-26 19:15:47,343 | INFO     | mean y: 2886264.065947242
[2025-11-26 14:16:42] 2025-11-26 19:15:47,343 | INFO     | intersect: -10049012827.629576
[2025-11-26 14:16:42] 2025-11-26 19:15:47,343 | INFO     | chi2: 3.2200404245235514
[2025-11-26 14:16:42] 2025-11-26 19:15:47,343 | INFO     | current chi2=3.2200404245235514 (change=39.16355496579105 %)
[2025-11-26 14:16:42] 2025-11-26 19:15:47,344 | INFO     | sum of square deviations: 176660701856.7959
[2025-11-26 14:16:42] 2025-11-26 19:15:47,355 | INFO     | sum of deviations: 955756348088.7114
[2025-11-26 14:16:42] 2025-11-26 19:15:47,355 | INFO     | mean x: 1764159265.9843185
[2025-11-26 14:16:42] 2025-11-26 19:15:47,355 | INFO     | mean y: 2889543.208685163
[2025-11-26 14:16:42] 2025-11-26 19:15:47,355 | INFO     | intersect: -9541431292.054495
[2025-11-26 14:16:42] 2025-11-26 19:15:47,356 | INFO     | chi2: 3.121513435448196
[2025-11-26 14:16:42] 2025-11-26 19:15:47,356 | INFO     | current chi2=3.121513435448196 (change=3.059805967806566 %)
[2025-11-26 14:16:42] 2025-11-26 19:15:47,356 | INFO     | left removable region: 20
[2025-11-26 14:16:42] 2025-11-26 19:15:47,357 | INFO     | sum of square deviations: 163573150351.87662
[2025-11-26 14:16:42] 2025-11-26 19:15:47,367 | INFO     | sum of deviations: 1122696450553.5054
[2025-11-26 14:16:42] 2025-11-26 19:15:47,368 | INFO     | mean x: 1764159235.5123763
[2025-11-26 14:16:42] 2025-11-26 19:15:47,368 | INFO     | mean y: 2907506.0495049506
[2025-11-26 14:16:42] 2025-11-26 19:15:47,368 | INFO     | intersect: -12105530264.209576
[2025-11-26 14:16:42] 2025-11-26 19:15:47,368 | INFO     | chi2: 0.11278163899269884
[2025-11-26 14:16:42] 2025-11-26 19:15:47,369 | INFO     | current memory leak: 6.86 B/s (using 808 data points, chi2=0.11)
[2025-11-26 14:16:42] 2025-11-26 19:15:47,369 | INFO     | could have reported an average CPU frequency of 3290 MHz (31 samples)
[2025-11-26 14:16:42] 2025-11-26 19:15:47,369 | INFO     | ..............................
[2025-11-26 14:16:42] 2025-11-26 19:15:47,369 | INFO     | . Timing measurements:
[2025-11-26 14:16:42] 2025-11-26 19:15:47,370 | INFO     | . get job = 0 s
[2025-11-26 14:16:42] 2025-11-26 19:15:47,370 | INFO     | . initial setup = 3 s
[2025-11-26 14:16:42] 2025-11-26 19:15:47,370 | INFO     | . payload setup = 21 s
[2025-11-26 14:16:42] 2025-11-26 19:15:47,370 | INFO     | . stage-in = 0 s
[2025-11-26 14:16:42] 2025-11-26 19:15:47,370 | INFO     | . payload execution = 51147 s
[2025-11-26 14:16:42] 2025-11-26 19:15:47,370 | INFO     | . stage-out = 4 s
[2025-11-26 14:16:42] 2025-11-26 19:15:47,370 | INFO     | . log creation = 0 s
[2025-11-26 14:16:42] 2025-11-26 19:15:47,370 | INFO     | ..............................
[2025-11-26 14:16:42] 2025-11-26 19:15:47,807 | INFO     | 
[2025-11-26 14:16:42] 2025-11-26 19:15:47,807 | INFO     | job summary report
[2025-11-26 14:16:42] 2025-11-26 19:15:47,807 | INFO     | --------------------------------------------------
[2025-11-26 14:16:42] 2025-11-26 19:15:47,807 | INFO     | PanDA job id: 6895674546
[2025-11-26 14:16:42] 2025-11-26 19:15:47,807 | INFO     | task id: 47556149
[2025-11-26 14:16:42] 2025-11-26 19:15:47,807 | INFO     | errors: (none)
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | pilot state: finished 
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | transexitcode: 0
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | exeerrorcode: 0
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | exeerrordiag: 
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | exitcode: 0
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | exitmsg: OK
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | cpuconsumptiontime: 200401 s
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | nevents: 1000
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | neventsw: 0
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | pid: 1443167
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | pgrp: 1443167
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | corecount: 8
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | event service: False
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | sizes: {0: 2284144, 1: 2284343, 12: 2284343, 17: 2284633, 23: 2284661, 51169: 2333868, 51174: 2342862, 51175: 2342918, 51186: 2343164}
[2025-11-26 14:16:42] 2025-11-26 19:15:47,808 | INFO     | --------------------------------------------------
[2025-11-26 14:16:42] 2025-11-26 19:15:47,809 | INFO     | 
[2025-11-26 14:16:42] 2025-11-26 19:15:47,809 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 14:16:42] 2025-11-26 19:15:47,837 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,837 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,837 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,837 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,837 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,837 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,838 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:16:42] 2025-11-26 19:15:47,839 | INFO     | job 6895674546 has completed (purged errors)
[2025-11-26 14:16:42] 2025-11-26 19:15:47,839 | INFO     | overall cleanup function is called
[2025-11-26 14:16:42] 2025-11-26 19:15:48,856 | INFO     | --- collectZombieJob: --- 10, [1443167]
[2025-11-26 14:16:42] 2025-11-26 19:15:48,856 | INFO     | zombie collector waiting for pid 1443167
[2025-11-26 14:16:42] 2025-11-26 19:15:48,856 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:16:42] 2025-11-26 19:15:48,856 | INFO     | collected zombie processes
[2025-11-26 14:16:42] 2025-11-26 19:15:48,856 | INFO     | will attempt to kill all subprocesses of pid=1443167
[2025-11-26 14:16:42] 2025-11-26 19:15:49,261 | INFO     | process IDs to be killed: [1443167] (in reverse order)
[2025-11-26 14:16:42] 2025-11-26 19:15:49,411 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:16:42] 2025-11-26 19:15:49,411 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:16:42] 2025-11-26 19:15:49,429 | INFO     | did not find any defunct processes belonging to 1443167
[2025-11-26 14:16:42] 2025-11-26 19:15:49,445 | INFO     | did not find any defunct processes belonging to 1443167
[2025-11-26 14:16:42] 2025-11-26 19:15:49,450 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:16:42] 2025-11-26 19:15:49,451 | INFO     | ready for new job
[2025-11-26 14:16:42] 2025-11-26 19:15:49,451 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:16:42] 2025-11-26 19:15:49,455 | INFO     | ***************************************
[2025-11-26 14:16:42] 2025-11-26 19:15:49,455 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:16:42] 2025-11-26 19:15:49,455 | INFO     | ***************************************
[2025-11-26 14:16:42] 2025-11-26 19:15:49,455 | INFO     | 
[2025-11-26 14:16:42] 2025-11-26 19:15:49,458 | INFO     | architecture information:
[2025-11-26 14:16:42] 2025-11-26 19:15:49,470 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:16:42] 2025-11-26 19:15:49,489 | INFO     | cat /etc/os-release:
[2025-11-26 14:16:42] NAME="CentOS Linux"
[2025-11-26 14:16:42] VERSION="7 (Core)"
[2025-11-26 14:16:42] ID="centos"
[2025-11-26 14:16:42] ID_LIKE="rhel fedora"
[2025-11-26 14:16:42] VERSION_ID="7"
[2025-11-26 14:16:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:16:42] ANSI_COLOR="0;31"
[2025-11-26 14:16:42] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:16:42] HOME_URL="https://www.centos.org/"
[2025-11-26 14:16:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:16:42] 
[2025-11-26 14:16:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:16:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:16:42] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:16:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:16:42] 
[2025-11-26 14:16:42] 2025-11-26 19:15:49,490 | INFO     | ***************************************
[2025-11-26 14:16:42] 2025-11-26 19:15:49,992 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 14:16:42] 2025-11-26 19:15:50,012 | INFO     | sufficient remaining disk space (89790611456 B)
[2025-11-26 14:16:42] 2025-11-26 19:15:50,012 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:16:42] 2025-11-26 19:15:50,012 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:16:42] 2025-11-26 19:15:50,012 | INFO     | update_server=False
[2025-11-26 14:16:42] 2025-11-26 19:15:50,012 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:16:42] 2025-11-26 19:15:50,049 | INFO     | all job control threads have been joined
[2025-11-26 14:16:42] 2025-11-26 19:15:50,187 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 14:16:42] 2025-11-26 19:15:50,187 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 14:16:42] 2025-11-26 19:15:50,188 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:16:42] 2025-11-26 19:15:50,188 | INFO     | will abort loop
[2025-11-26 14:16:42] 2025-11-26 19:15:50,810 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:16:42] 2025-11-26 19:15:51,019 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:51,044 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:16:42] 2025-11-26 19:15:51,054 | INFO     | [job] control thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:51,067 | INFO     | all data control threads have been joined
[2025-11-26 14:16:42] 2025-11-26 19:15:51,187 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:51,193 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:51,315 | INFO     | all payload control threads have been joined
[2025-11-26 14:16:42] 2025-11-26 19:15:51,681 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:51,792 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:51,923 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:52,091 | INFO     | [data] control thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:52,285 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:52,327 | INFO     | [payload] control thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:52,390 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:52,394 | INFO     | [job] validate thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:52,459 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:16:42] 2025-11-26 19:15:53,050 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:53,465 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:15:54,817 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:16:00,762 | INFO     | job.realtimelogging is not enabled
[2025-11-26 14:16:42] 2025-11-26 19:16:01,769 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:16:42] 2025-11-26 19:16:20,407 | INFO     | PID=1416418 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 14:16:42] 2025-11-26 19:16:20,407 | INFO     | .. there are 39 such processes running
[2025-11-26 14:16:42] 2025-11-26 19:16:20,407 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:16:42] 2025-11-26 19:16:20,407 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:16:42] 2025-11-26 19:16:20,407 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:16:42] 2025-11-26 19:16:35,174 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:16:42] 2025-11-26 19:16:36,699 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140531465279296)>', '<ExcThread(monitor, started 140530969200384)>']
[2025-11-26 14:16:42] 2025-11-26 19:16:37,536 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:16:42] 2025-11-26 19:16:37,536 | INFO     | [monitor] control thread has ended
[2025-11-26 14:16:42] 2025-11-26 19:16:41,725 | INFO     | all workflow threads have been joined
[2025-11-26 14:16:42] 2025-11-26 19:16:41,725 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:16:42] 2025-11-26 19:16:41,725 | INFO     | traces error code: 0
[2025-11-26 14:16:42] 2025-11-26 19:16:41,726 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:16:42] 2025-11-26 19:16:41,957 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:16:42] 2025-11-26 19:16:41,960 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:16:42] 2025-11-26 19:16:41,963 [wrapper] pilotpid: 1416418
[2025-11-26 14:16:42] 2025-11-26 19:16:41,966 [wrapper] Pilot exit status: 0
[2025-11-26 14:16:42] 2025-11-26 19:16:41,978 [wrapper] pandaids: 6895674546
[2025-11-26 14:16:42] 2025-11-26 19:16:42,078 [wrapper] cleanup supervisor_pilot  851586 1416419
[2025-11-26 14:16:42] 2025-11-26 19:16:42,080 [wrapper] Test setup, not cleaning
[2025-11-26 14:16:42] 2025-11-26 19:16:42,082 [wrapper] apfmon messages muted
[2025-11-26 14:16:42] 2025-11-26 19:16:42,085 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:16:42] 2025-11-26 19:16:42,086 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:16:42]  *** Error codes and diagnostics ***
[2025-11-26 14:16:42]     "exeErrorCode": 0,
[2025-11-26 14:16:42]     "exeErrorDiag": "",
[2025-11-26 14:16:42]     "pilotErrorCode": 0,
[2025-11-26 14:16:42]     "pilotErrorDiag": "",
[2025-11-26 14:16:42]  *** Listing of results directory ***
[2025-11-26 14:16:42] total 1331496
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 09:01 pilot3.tar.gz
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 09:25 queuedata.json
[2025-11-26 14:16:42] -rwx------. 1 boincer umatlas     36292 Nov 24 09:28 runpilot2-wrapper.sh
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:16:42] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-26 14:16:42] -rw-r--r--. 2 boincer umatlas 409877374 Nov 26 00:01 EVNT.47483658._001359.pool.root.1
[2025-11-26 14:16:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 14:16:42] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-26 14:16:42] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:01 input.tar.gz
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:01 pandaJob.out
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-26 14:16:42] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas       533 Nov 26 14:08 boinc_task_state.xml
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas      6902 Nov 26 14:10 init_data.xml
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas 932326987 Nov 26 14:14 HITS.47556149._003459.pool.root.1
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas      1059 Nov 26 14:15 memory_monitor_summary.json
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas        95 Nov 26 14:15 pilot_heartbeat.json
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas   1516240 Nov 26 14:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas   2025655 Nov 26 14:15 log.47556149._003459.job.log.tgz.1
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas      8620 Nov 26 14:15 heartbeat.json
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas        29 Nov 26 14:16 wrapper_checkpoint.txt
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 14:16 boinc_mmap_file
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas      5082 Nov 26 14:16 pilotlog.txt
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas   6638078 Nov 26 14:16 log.47556149._003459.job.log.1
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas       353 Nov 26 14:16 output.list
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas       620 Nov 26 14:16 runtime_log
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas   8683520 Nov 26 14:16 result.tar.gz
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 14:16 runtime_log.err
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas       664 Nov 26 14:16 AwxNDm2imh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmW5IKDmjfMDdm.diag
[2025-11-26 14:16:42] -rw-r--r--. 1 boincer umatlas     21303 Nov 26 14:16 stderr.txt
[2025-11-26 14:16:42] HITS file was successfully produced:
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas 932326987 Nov 26 14:14 shared/HITS.pool.root.1
[2025-11-26 14:16:42]  *** Contents of shared directory: ***
[2025-11-26 14:16:42] total 1319832
[2025-11-26 14:16:42] -rw-r--r--. 2 boincer umatlas 409877374 Nov 26 00:01 ATLAS.root_0
[2025-11-26 14:16:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 14:16:42] -rw-r--r--. 2 boincer umatlas    590106 Nov 26 00:01 input.tar.gz
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas 932326987 Nov 26 14:14 HITS.pool.root.1
[2025-11-26 14:16:42] -rw-------. 1 boincer umatlas   8683520 Nov 26 14:16 result.tar.gz
14:16:44 (1407514): run_atlas exited; CPU time 200459.002506
14:16:44 (1407514): called boinc_finish(0)

</stderr_txt>
]]>

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