Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:11 (3030481): wrapper (7.7.26015): starting
00:03:11 (3030481): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:03:11] Arguments: --nthreads 12
[2025-11-27 00:03:11] Threads: 12
[2025-11-27 00:03:11] Checking for CVMFS
[2025-11-27 00:03:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:03:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:03:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:03:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:03:14] 2.13.2.0 8902 36837 307452 153347 3 300 36887979 40960000 27530 16776704 0 76755506 99.620 81383536 36495 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:03:14] CVMFS is ok
[2025-11-27 00:03:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:03:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:03:14] Further information can be found at the LHC@home message board.
[2025-11-27 00:03:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:03:14] Checking for apptainer binary...
[2025-11-27 00:03:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:03:14] Running /usr/bin/apptainer --version
[2025-11-27 00:03:15] apptainer version 1.4.4-1.el9
[2025-11-27 00:03:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:03:16] c-211-35-2.aglt2.org
[2025-11-27 00:03:16] apptainer works
[2025-11-27 00:03:16] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:03:16] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:03:16] Starting ATLAS job with PandaID=6896219193
[2025-11-27 00:03:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 17:43:24]  *** The last 200 lines of the pilot log: ***
[2025-11-27 17:43:24] 2025-11-27 22:42:18,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:43:24] 2025-11-27 22:42:20,330 | INFO     | PID=3038446 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:43:24] 2025-11-27 22:42:20,330 | INFO     | .. there are 25 such processes running
[2025-11-27 17:43:24] 2025-11-27 22:42:20,610 | INFO     | monitor loop #3423: job 0:6896219193 is in state 'finished'
[2025-11-27 17:43:24] 2025-11-27 22:42:20,611 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:43:24] 2025-11-27 22:42:21,331 | INFO     | time since job start (63480s) is within the limit (172800.0s)
[2025-11-27 17:43:24] 2025-11-27 22:42:23,116 | INFO     | monitor loop #3424: job 0:6896219193 is in state 'finished'
[2025-11-27 17:43:24] 2025-11-27 22:42:23,117 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:43:24] 2025-11-27 22:42:23,338 | INFO     | time since job start (63482s) is within the limit (172800.0s)
[2025-11-27 17:43:24] 2025-11-27 22:42:25,345 | INFO     | time since job start (63484s) is within the limit (172800.0s)
[2025-11-27 17:43:24] 2025-11-27 22:42:25,623 | INFO     | monitor loop #3425: job 0:6896219193 is in state 'finished'
[2025-11-27 17:43:24] 2025-11-27 22:42:25,624 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:43:24] 2025-11-27 22:42:27,372 | INFO     | time since job start (63486s) is within the limit (172800.0s)
[2025-11-27 17:43:24] 2025-11-27 22:42:28,138 | INFO     | monitor loop #3426: job 0:6896219193 is in state 'finished'
[2025-11-27 17:43:24] 2025-11-27 22:42:28,139 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 17:43:24] 2025-11-27 22:42:29,379 | INFO     | time since job start (63488s) is within the limit (172800.0s)
[2025-11-27 17:43:24] 2025-11-27 22:42:30,240 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 17:43:24] 2025-11-27 22:42:30,303 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2624.638416666666
[2025-11-27 17:43:24] 2025-11-27 22:42:30,394 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6896219193/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 17:43:24] 2025-11-27 22:42:30,395 | INFO     | extracted standard info from prmon json
[2025-11-27 17:43:24] 2025-11-27 22:42:30,395 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 17:43:24] 2025-11-27 22:42:30,395 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 17:43:24] 2025-11-27 22:42:30,415 | INFO     | fitting pss+swap vs Time
[2025-11-27 17:43:24] 2025-11-27 22:42:30,416 | INFO     | sum of square deviations: 346748943291.55396
[2025-11-27 17:43:24] 2025-11-27 22:42:30,438 | INFO     | sum of deviations: 3368564274021.1553
[2025-11-27 17:43:24] 2025-11-27 22:42:30,438 | INFO     | mean x: 1764251676.1050096
[2025-11-27 17:43:24] 2025-11-27 22:42:30,438 | INFO     | mean y: 3493209.411368015
[2025-11-27 17:43:24] 2025-11-27 22:42:30,438 | INFO     | intersect: -17135694325.220222
[2025-11-27 17:43:24] 2025-11-27 22:42:30,439 | INFO     | chi2: 22.021332701522162
[2025-11-27 17:43:24] 2025-11-27 22:42:30,441 | INFO     | sum of square deviations: 341763358996.21313
[2025-11-27 17:43:24] 2025-11-27 22:42:30,462 | INFO     | sum of deviations: 3825726433615.842
[2025-11-27 17:43:24] 2025-11-27 22:42:30,462 | INFO     | mean x: 1764251523.6321394
[2025-11-27 17:43:24] 2025-11-27 22:42:30,462 | INFO     | mean y: 3507186.818005808
[2025-11-27 17:43:24] 2025-11-27 22:42:30,462 | INFO     | intersect: -19745665776.984962
[2025-11-27 17:43:24] 2025-11-27 22:42:30,464 | INFO     | chi2: 18.128513373762736
[2025-11-27 17:43:24] 2025-11-27 22:42:30,464 | INFO     | current chi2=18.128513373762736 (change=17.67749200524247 %)
[2025-11-27 17:43:24] 2025-11-27 22:42:30,464 | INFO     | right removable region: 1032
[2025-11-27 17:43:24] 2025-11-27 22:42:30,465 | INFO     | sum of square deviations: 341759873344.4767
[2025-11-27 17:43:24] 2025-11-27 22:42:30,486 | INFO     | sum of deviations: 2865589759736.115
[2025-11-27 17:43:24] 2025-11-27 22:42:30,486 | INFO     | mean x: 1764251828.6311712
[2025-11-27 17:43:24] 2025-11-27 22:42:30,487 | INFO     | mean y: 3508584.29428848
[2025-11-27 17:43:24] 2025-11-27 22:42:30,487 | INFO     | intersect: -14789398272.343584
[2025-11-27 17:43:24] 2025-11-27 22:42:30,488 | INFO     | chi2: 17.989592307202855
[2025-11-27 17:43:24] 2025-11-27 22:42:30,488 | INFO     | current chi2=17.989592307202855 (change=18.308339685729486 %)
[2025-11-27 17:43:24] 2025-11-27 22:42:30,488 | INFO     | left removable region: 10
[2025-11-27 17:43:24] 2025-11-27 22:42:30,490 | INFO     | sum of square deviations: 330956838292.4105
[2025-11-27 17:43:24] 2025-11-27 22:42:30,511 | INFO     | sum of deviations: 2952633851378.8013
[2025-11-27 17:43:24] 2025-11-27 22:42:30,511 | INFO     | mean x: 1764251798.1917808
[2025-11-27 17:43:24] 2025-11-27 22:42:30,511 | INFO     | mean y: 3539410.046966732
[2025-11-27 17:43:24] 2025-11-27 22:42:30,511 | INFO     | intersect: -15736245900.249279
[2025-11-27 17:43:24] 2025-11-27 22:42:30,512 | INFO     | chi2: 10.25908556159703
[2025-11-27 17:43:24] 2025-11-27 22:42:30,513 | INFO     | current memory leak: 8.92 B/s (using 1022 data points, chi2=10.26)
[2025-11-27 17:43:24] 2025-11-27 22:42:30,514 | INFO     | could have reported an average CPU frequency of 2572 MHz (38 samples)
[2025-11-27 17:43:24] 2025-11-27 22:42:30,514 | INFO     | ..............................
[2025-11-27 17:43:24] 2025-11-27 22:42:30,514 | INFO     | . Timing measurements:
[2025-11-27 17:43:24] 2025-11-27 22:42:30,514 | INFO     | . get job = 0 s
[2025-11-27 17:43:24] 2025-11-27 22:42:30,514 | INFO     | . initial setup = 4 s
[2025-11-27 17:43:24] 2025-11-27 22:42:30,515 | INFO     | . payload setup = 58 s
[2025-11-27 17:43:24] 2025-11-27 22:42:30,515 | INFO     | . stage-in = 0 s
[2025-11-27 17:43:24] 2025-11-27 22:42:30,515 | INFO     | . payload execution = 63298 s
[2025-11-27 17:43:24] 2025-11-27 22:42:30,515 | INFO     | . stage-out = 9 s
[2025-11-27 17:43:24] 2025-11-27 22:42:30,515 | INFO     | . log creation = 3 s
[2025-11-27 17:43:24] 2025-11-27 22:42:30,515 | INFO     | ..............................
[2025-11-27 17:43:24] 2025-11-27 22:42:31,288 | INFO     | 
[2025-11-27 17:43:24] 2025-11-27 22:42:31,288 | INFO     | job summary report
[2025-11-27 17:43:24] 2025-11-27 22:42:31,288 | INFO     | --------------------------------------------------
[2025-11-27 17:43:24] 2025-11-27 22:42:31,288 | INFO     | PanDA job id: 6896219193
[2025-11-27 17:43:24] 2025-11-27 22:42:31,288 | INFO     | task id: 47556149
[2025-11-27 17:43:24] 2025-11-27 22:42:31,289 | INFO     | errors: (none)
[2025-11-27 17:43:24] 2025-11-27 22:42:31,289 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 17:43:24] 2025-11-27 22:42:31,289 | INFO     | pilot state: finished 
[2025-11-27 17:43:24] 2025-11-27 22:42:31,289 | INFO     | transexitcode: 0
[2025-11-27 17:43:24] 2025-11-27 22:42:31,289 | INFO     | exeerrorcode: 0
[2025-11-27 17:43:24] 2025-11-27 22:42:31,289 | INFO     | exeerrordiag: 
[2025-11-27 17:43:24] 2025-11-27 22:42:31,289 | INFO     | exitcode: 0
[2025-11-27 17:43:24] 2025-11-27 22:42:31,289 | INFO     | exitmsg: OK
[2025-11-27 17:43:24] 2025-11-27 22:42:31,289 | INFO     | cpuconsumptiontime: 264066 s
[2025-11-27 17:43:24] 2025-11-27 22:42:31,290 | INFO     | nevents: 1000
[2025-11-27 17:43:24] 2025-11-27 22:42:31,290 | INFO     | neventsw: 0
[2025-11-27 17:43:24] 2025-11-27 22:42:31,290 | INFO     | pid: 3045716
[2025-11-27 17:43:24] 2025-11-27 22:42:31,290 | INFO     | pgrp: 3045716
[2025-11-27 17:43:24] 2025-11-27 22:42:31,290 | INFO     | corecount: 12
[2025-11-27 17:43:24] 2025-11-27 22:42:31,290 | INFO     | event service: False
[2025-11-27 17:43:24] 2025-11-27 22:42:31,290 | INFO     | sizes: {0: 2283486, 1: 2284087, 2: 2284199, 3: 2284398, 4: 2284398, 15: 2284426, 26: 2284582, 37: 2284610, 39: 2284900, 49: 2284928, 63358: 2338434, 63368: 2347428
[2025-11-27 17:43:24] 2025-11-27 22:42:31,290 | INFO     | --------------------------------------------------
[2025-11-27 17:43:24] 2025-11-27 22:42:31,290 | INFO     | 
[2025-11-27 17:43:24] 2025-11-27 22:42:31,291 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 17:43:24] 2025-11-27 22:42:31,387 | INFO     | time since job start (63490s) is within the limit (172800.0s)
[2025-11-27 17:43:24] 2025-11-27 22:42:31,407 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,407 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,407 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,407 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,407 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,408 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,408 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,408 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,408 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,408 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,408 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,408 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,409 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,409 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,409 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,409 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,409 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,409 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 17:43:24] 2025-11-27 22:42:31,409 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,410 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 17:43:24] 2025-11-27 22:42:31,410 | INFO     | job 6896219193 has completed (purged errors)
[2025-11-27 17:43:24] 2025-11-27 22:42:31,410 | INFO     | overall cleanup function is called
[2025-11-27 17:43:24] 2025-11-27 22:42:32,599 | INFO     | --- collectZombieJob: --- 10, [3045716]
[2025-11-27 17:43:24] 2025-11-27 22:42:32,600 | INFO     | zombie collector waiting for pid 3045716
[2025-11-27 17:43:24] 2025-11-27 22:42:32,600 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 17:43:24] 2025-11-27 22:42:32,600 | INFO     | collected zombie processes
[2025-11-27 17:43:24] 2025-11-27 22:42:32,600 | INFO     | will attempt to kill all subprocesses of pid=3045716
[2025-11-27 17:43:24] 2025-11-27 22:42:34,878 | INFO     | process IDs to be killed: [3045716] (in reverse order)
[2025-11-27 17:43:24] 2025-11-27 22:42:35,165 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 17:43:24] 2025-11-27 22:42:35,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 17:43:24] 2025-11-27 22:42:35,205 | INFO     | did not find any defunct processes belonging to 3045716
[2025-11-27 17:43:24] 2025-11-27 22:42:35,307 | INFO     | did not find any defunct processes belonging to 3045716
[2025-11-27 17:43:24] 2025-11-27 22:42:35,342 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 17:43:24] 2025-11-27 22:42:35,342 | INFO     | ready for new job
[2025-11-27 17:43:24] 2025-11-27 22:42:35,342 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 17:43:24] 2025-11-27 22:42:35,367 | INFO     | ***************************************
[2025-11-27 17:43:24] 2025-11-27 22:42:35,368 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 17:43:24] 2025-11-27 22:42:35,368 | INFO     | ***************************************
[2025-11-27 17:43:24] 2025-11-27 22:42:35,391 | INFO     | 
[2025-11-27 17:43:24] 2025-11-27 22:42:35,420 | INFO     | architecture information:
[2025-11-27 17:43:24] 2025-11-27 22:42:35,451 | INFO     | executing command: cat /etc/os-release
[2025-11-27 17:43:24] 2025-11-27 22:42:35,534 | INFO     | cat /etc/os-release:
[2025-11-27 17:43:24] NAME="CentOS Linux"
[2025-11-27 17:43:24] VERSION="7 (Core)"
[2025-11-27 17:43:24] ID="centos"
[2025-11-27 17:43:24] ID_LIKE="rhel fedora"
[2025-11-27 17:43:24] VERSION_ID="7"
[2025-11-27 17:43:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 17:43:24] ANSI_COLOR="0;31"
[2025-11-27 17:43:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 17:43:24] HOME_URL="https://www.centos.org/"
[2025-11-27 17:43:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 17:43:24] 
[2025-11-27 17:43:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 17:43:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 17:43:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 17:43:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 17:43:24] 
[2025-11-27 17:43:24] 2025-11-27 22:42:35,534 | INFO     | ***************************************
[2025-11-27 17:43:24] 2025-11-27 22:42:36,040 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 17:43:24] 2025-11-27 22:42:36,127 | INFO     | sufficient remaining disk space (121689341952 B)
[2025-11-27 17:43:24] 2025-11-27 22:42:36,127 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 17:43:24] 2025-11-27 22:42:36,128 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 17:43:24] 2025-11-27 22:42:36,128 | INFO     | update_server=False
[2025-11-27 17:43:24] 2025-11-27 22:42:36,128 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 17:43:24] 2025-11-27 22:42:36,128 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:43:24] 2025-11-27 22:42:36,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 17:43:24] 2025-11-27 22:42:36,502 | INFO     | all data control threads have been joined
[2025-11-27 17:43:24] 2025-11-27 22:42:36,752 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 17:43:24] 2025-11-27 22:42:36,753 | INFO     | aborting loop
[2025-11-27 17:43:24] 2025-11-27 22:42:36,805 | INFO     | all payload control threads have been joined
[2025-11-27 17:43:24] 2025-11-27 22:42:37,134 | INFO     | [job] retrieve thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:37,134 | INFO     | [job] queue monitor thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:37,159 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 17:43:24] 2025-11-27 22:42:37,336 | INFO     | [job] validate thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:37,336 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:37,508 | INFO     | [data] control thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:37,547 | INFO     | all job control threads have been joined
[2025-11-27 17:43:24] 2025-11-27 22:42:37,695 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:37,759 | INFO     | [job] job monitor thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:37,786 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:37,811 | INFO     | [payload] control thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:38,084 | INFO     | [data] copytool_in thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:38,090 | INFO     | [payload] failed_post thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:38,103 | INFO     | [payload] validate_post thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:38,155 | INFO     | [data] copytool_out thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:38,324 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:38,553 | INFO     | [job] control thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:42:41,170 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 17:43:24] 2025-11-27 22:43:08,343 | INFO     | PID=3038446 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 17:43:24] 2025-11-27 22:43:08,367 | INFO     | .. there are 25 such processes running
[2025-11-27 17:43:24] 2025-11-27 22:43:08,369 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 17:43:24] 2025-11-27 22:43:08,369 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 17:43:24] 2025-11-27 22:43:08,369 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 17:43:24] 2025-11-27 22:43:17,029 | INFO     | [monitor] cgroup control has ended
[2025-11-27 17:43:24] 2025-11-27 22:43:17,572 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139761802164032)>', '<ExcThread(monitor, started 139761146636032)>']
[2025-11-27 17:43:24] 2025-11-27 22:43:18,441 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 17:43:24] 2025-11-27 22:43:18,442 | INFO     | [monitor] control thread has ended
[2025-11-27 17:43:24] 2025-11-27 22:43:22,599 | INFO     | all workflow threads have been joined
[2025-11-27 17:43:24] 2025-11-27 22:43:22,600 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 17:43:24] 2025-11-27 22:43:22,600 | INFO     | traces error code: 0
[2025-11-27 17:43:24] 2025-11-27 22:43:22,600 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 17:43:24] 2025-11-27 22:43:23,167 [wrapper] ==== pilot stdout END ====
[2025-11-27 17:43:24] 2025-11-27 22:43:23,206 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 17:43:24] 2025-11-27 22:43:23,227 [wrapper] pilotpid: 3038446
[2025-11-27 17:43:24] 2025-11-27 22:43:23,358 [wrapper] Pilot exit status: 0
[2025-11-27 17:43:24] 2025-11-27 22:43:23,446 [wrapper] pandaids: 6896219193
[2025-11-27 17:43:24] 2025-11-27 22:43:24,394 [wrapper] cleanup supervisor_pilot 1510507 3038447
[2025-11-27 17:43:24] 2025-11-27 22:43:24,416 [wrapper] Test setup, not cleaning
[2025-11-27 17:43:24] 2025-11-27 22:43:24,435 [wrapper] apfmon messages muted
[2025-11-27 17:43:24] 2025-11-27 22:43:24,454 [wrapper] ==== wrapper stdout END ====
[2025-11-27 17:43:24] 2025-11-27 22:43:24,470 [wrapper] ==== wrapper stderr END ====
[2025-11-27 17:43:24]  *** Error codes and diagnostics ***
[2025-11-27 17:43:24]     "exeErrorCode": 0,
[2025-11-27 17:43:24]     "exeErrorDiag": "",
[2025-11-27 17:43:24]     "pilotErrorCode": 0,
[2025-11-27 17:43:24]     "pilotErrorDiag": "",
[2025-11-27 17:43:24]  *** Listing of results directory ***
[2025-11-27 17:43:24] total 1311692
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:40 queuedata.json
[2025-11-27 17:43:24] -rwx------. 1 boincer umatlas     36292 Nov 24 14:43 runpilot2-wrapper.sh
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 17:43:24] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:03 run_atlas
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:03 job.xml
[2025-11-27 17:43:24] -rw-r--r--. 2 boincer umatlas 410070533 Nov 27 00:03 EVNT.47483658._001409.pool.root.1
[2025-11-27 17:43:24] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 17:43:24] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:03 shared
[2025-11-27 17:43:24] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:03 input.tar.gz
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:03 boinc_lockfile
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas      2785 Nov 27 00:03 pandaJob.out
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas        57 Nov 27 00:03 setup.sh.local
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas    991570 Nov 27 00:04 agis_schedconf.cvmfs.json
[2025-11-27 17:43:24] drwx------. 5 boincer umatlas      4096 Nov 27 00:04 pilot3
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas       533 Nov 27 17:14 boinc_task_state.xml
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 17:37 init_data.xml
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas 908984074 Nov 27 17:40 HITS.47556149._003958.pool.root.1
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas      1060 Nov 27 17:41 memory_monitor_summary.json
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas   1516240 Nov 27 17:41 agis_ddmendpoints.agis.ALL.json
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas   2585712 Nov 27 17:41 log.47556149._003958.job.log.tgz.1
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas      8625 Nov 27 17:42 heartbeat.json
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas        95 Nov 27 17:43 pilot_heartbeat.json
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas      4825 Nov 27 17:43 pilotlog.txt
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 17:43 boinc_mmap_file
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas        29 Nov 27 17:43 wrapper_checkpoint.txt
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas   7513221 Nov 27 17:43 log.47556149._003958.job.log.1
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas       353 Nov 27 17:43 output.list
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas       620 Nov 27 17:43 runtime_log
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas  10117120 Nov 27 17:43 result.tar.gz
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas      9355 Nov 27 17:43 runtime_log.err
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas       662 Nov 27 17:43 mfaMDmIerh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6sLKDmiHDONo.diag
[2025-11-27 17:43:24] -rw-r--r--. 1 boincer umatlas     21909 Nov 27 17:43 stderr.txt
[2025-11-27 17:43:24] HITS file was successfully produced:
[2025-11-27 17:43:24] -rw-------. 1 boincer umatlas 908984074 Nov 27 17:40 shared/HITS.pool.root.1
[2025-11-27 17:43:24]  *** Contents of shared directory: ***
[2025-11-27 17:43:25] total 1298624
[2025-11-27 17:43:25] -rw-r--r--. 2 boincer umatlas 410070533 Nov 27 00:03 ATLAS.root_0
[2025-11-27 17:43:25] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:03 start_atlas.sh
[2025-11-27 17:43:25] -rw-r--r--. 2 boincer umatlas    590103 Nov 27 00:03 input.tar.gz
[2025-11-27 17:43:25] -rw-------. 1 boincer umatlas 908984074 Nov 27 17:40 HITS.pool.root.1
[2025-11-27 17:43:25] -rw-------. 1 boincer umatlas  10117120 Nov 27 17:43 result.tar.gz
17:43:26 (3030481): run_atlas exited; CPU time 265289.878646
17:43:26 (3030481): called boinc_finish(0)

</stderr_txt>
]]>

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