Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:42 (1047700): wrapper (7.7.26015): starting
00:01:42 (1047700): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:01:42] Arguments: --nthreads 8
[2025-11-26 00:01:42] Threads: 8
[2025-11-26 00:01:42] Checking for CVMFS
[2025-11-26 00:01:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:45] 2.13.3.0 10954 29601 374428 153309 2 221 28981677 32935937 22127 16776704 26 131086109 99.456 194054583 39261 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:45] CVMFS is ok
[2025-11-26 00:01:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:45] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:45] Checking for apptainer binary...
[2025-11-26 00:01:45] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:45] Running /usr/bin/apptainer --version
[2025-11-26 00:01:45] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:45] c7-11-13.aglt2.org
[2025-11-26 00:01:45] apptainer works
[2025-11-26 00:01:45] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:01:45] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:01:46] Starting ATLAS job with PandaID=6896219672
[2025-11-26 00:01:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:42:06]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:42:06] 2025-11-27 01:41:27,390 | INFO     | this job has now completed (state=finished)
[2025-11-26 20:42:06] 2025-11-27 01:41:27,390 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 20:42:06] 2025-11-27 01:41:27,390 | INFO     | log transfer has been attempted: DONE
[2025-11-26 20:42:06] 2025-11-27 01:41:27,390 | INFO     | job 6896219672 has finished - writing final server update
[2025-11-26 20:42:06] 2025-11-27 01:41:27,390 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 20:42:06] 2025-11-27 01:41:27,396 | INFO     | executing command: lscpu
[2025-11-26 20:42:06] 2025-11-27 01:41:27,463 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 20:42:06] 2025-11-27 01:41:27,904 | INFO     | time since job start (74269s) is within the limit (172800.0s)
[2025-11-26 20:42:06] 2025-11-27 01:41:28,222 | INFO     | monitor loop #4701: job 0:6896219672 is in state 'finished'
[2025-11-26 20:42:06] 2025-11-27 01:41:28,222 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:42:06] 2025-11-27 01:41:29,910 | INFO     | time since job start (74271s) is within the limit (172800.0s)
[2025-11-26 20:42:06] 2025-11-27 01:41:30,725 | INFO     | monitor loop #4702: job 0:6896219672 is in state 'finished'
[2025-11-26 20:42:06] 2025-11-27 01:41:30,725 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:42:06] 2025-11-27 01:41:31,558 | INFO     | PID=1070331 has CPU usage=17.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 20:42:06] 2025-11-27 01:41:31,558 | INFO     | .. there are 34 such processes running
[2025-11-26 20:42:06] 2025-11-27 01:41:32,372 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:42:06] 2025-11-27 01:41:32,379 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3290.476046875
[2025-11-26 20:42:06] 2025-11-27 01:41:32,390 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896219672/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:42:06] 2025-11-27 01:41:32,391 | INFO     | extracted standard info from prmon json
[2025-11-26 20:42:06] 2025-11-27 01:41:32,391 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:42:06] 2025-11-27 01:41:32,391 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:42:06] 2025-11-27 01:41:32,429 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:42:06] 2025-11-27 01:41:32,433 | INFO     | sum of square deviations: 553366552004.3617
[2025-11-26 20:42:06] 2025-11-27 01:41:32,463 | INFO     | sum of deviations: 5593687781745.112
[2025-11-26 20:42:06] 2025-11-27 01:41:32,465 | INFO     | mean x: 1764170661.1665292
[2025-11-26 20:42:06] 2025-11-27 01:41:32,465 | INFO     | mean y: 2803324.7023907667
[2025-11-26 20:42:06] 2025-11-27 01:41:32,465 | INFO     | intersect: -17830258389.15889
[2025-11-26 20:42:06] 2025-11-27 01:41:32,466 | INFO     | chi2: 24.688011051307296
[2025-11-26 20:42:06] 2025-11-27 01:41:32,468 | INFO     | sum of square deviations: 546551821080.7949
[2025-11-26 20:42:06] 2025-11-27 01:41:32,495 | INFO     | sum of deviations: 5997379576082.5625
[2025-11-26 20:42:06] 2025-11-27 01:41:32,495 | INFO     | mean x: 1764170508.6754966
[2025-11-26 20:42:06] 2025-11-27 01:41:32,495 | INFO     | mean y: 2812359.542218543
[2025-11-26 20:42:06] 2025-11-27 01:41:32,495 | INFO     | intersect: -19355645099.3225
[2025-11-26 20:42:06] 2025-11-27 01:41:32,496 | INFO     | chi2: 21.350567581743956
[2025-11-26 20:42:06] 2025-11-27 01:41:32,496 | INFO     | current chi2=21.350567581743956 (change=13.518478514236623 %)
[2025-11-26 20:42:06] 2025-11-27 01:41:32,496 | INFO     | right removable region: 1207
[2025-11-26 20:42:06] 2025-11-27 01:41:32,497 | INFO     | sum of square deviations: 546550218000.7955
[2025-11-26 20:42:06] 2025-11-27 01:41:32,526 | INFO     | sum of deviations: 5092652485597.431
[2025-11-26 20:42:06] 2025-11-27 01:41:32,527 | INFO     | mean x: 1764170813.6754966
[2025-11-26 20:42:06] 2025-11-27 01:41:32,527 | INFO     | mean y: 2814534.2408940396
[2025-11-26 20:42:06] 2025-11-27 01:41:32,527 | INFO     | intersect: -16435398430.244436
[2025-11-26 20:42:06] 2025-11-27 01:41:32,528 | INFO     | chi2: 19.89712188075975
[2025-11-26 20:42:06] 2025-11-27 01:41:32,528 | INFO     | current chi2=19.89712188075975 (change=19.405731634642372 %)
[2025-11-26 20:42:06] 2025-11-27 01:41:32,528 | INFO     | left removable region: 10
[2025-11-26 20:42:06] 2025-11-27 01:41:32,530 | INFO     | sum of square deviations: 531753658032.25525
[2025-11-26 20:42:06] 2025-11-27 01:41:32,550 | INFO     | sum of deviations: 5153057983570.774
[2025-11-26 20:42:06] 2025-11-27 01:41:32,551 | INFO     | mean x: 1764170783.1954887
[2025-11-26 20:42:06] 2025-11-27 01:41:32,551 | INFO     | mean y: 2835828.0309106098
[2025-11-26 20:42:06] 2025-11-27 01:41:32,551 | INFO     | intersect: -17093190125.73203
[2025-11-26 20:42:06] 2025-11-27 01:41:32,551 | INFO     | chi2: 12.100184973927629
[2025-11-26 20:42:06] 2025-11-27 01:41:32,552 | INFO     | current memory leak: 9.69 B/s (using 1197 data points, chi2=12.10)
[2025-11-26 20:42:06] 2025-11-27 01:41:32,552 | INFO     | could have reported an average CPU frequency of 3282 MHz (44 samples)
[2025-11-26 20:42:06] 2025-11-27 01:41:32,553 | INFO     | ..............................
[2025-11-26 20:42:06] 2025-11-27 01:41:32,553 | INFO     | . Timing measurements:
[2025-11-26 20:42:06] 2025-11-27 01:41:32,553 | INFO     | . get job = 0 s
[2025-11-26 20:42:06] 2025-11-27 01:41:32,553 | INFO     | . initial setup = 6 s
[2025-11-26 20:42:06] 2025-11-27 01:41:32,553 | INFO     | . payload setup = 79 s
[2025-11-26 20:42:06] 2025-11-27 01:41:32,553 | INFO     | . stage-in = 0 s
[2025-11-26 20:42:06] 2025-11-27 01:41:32,553 | INFO     | . payload execution = 74056 s
[2025-11-26 20:42:06] 2025-11-27 01:41:32,553 | INFO     | . stage-out = 3 s
[2025-11-26 20:42:06] 2025-11-27 01:41:32,553 | INFO     | . log creation = 0 s
[2025-11-26 20:42:06] 2025-11-27 01:41:32,553 | INFO     | ..............................
[2025-11-26 20:42:06] 2025-11-27 01:41:32,558 | INFO     | time since job start (74274s) is within the limit (172800.0s)
[2025-11-26 20:42:06] 2025-11-27 01:41:32,766 | INFO     | 
[2025-11-26 20:42:06] 2025-11-27 01:41:32,767 | INFO     | job summary report
[2025-11-26 20:42:06] 2025-11-27 01:41:32,767 | INFO     | --------------------------------------------------
[2025-11-26 20:42:06] 2025-11-27 01:41:32,767 | INFO     | PanDA job id: 6896219672
[2025-11-26 20:42:06] 2025-11-27 01:41:32,767 | INFO     | task id: 47556149
[2025-11-26 20:42:06] 2025-11-27 01:41:32,767 | INFO     | errors: (none)
[2025-11-26 20:42:06] 2025-11-27 01:41:32,767 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:42:06] 2025-11-27 01:41:32,767 | INFO     | pilot state: finished 
[2025-11-26 20:42:06] 2025-11-27 01:41:32,767 | INFO     | transexitcode: 0
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | exeerrorcode: 0
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | exeerrordiag: 
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | exitcode: 0
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | exitmsg: OK
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | cpuconsumptiontime: 197241 s
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | nevents: 1000
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | neventsw: 0
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | pid: 1134538
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | pgrp: 1134538
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | corecount: 8
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | event service: False
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | sizes: {0: 2284087, 1: 2284286, 12: 2284286, 23: 2284314, 34: 2284342, 45: 2284370, 56: 2284526, 61: 2284816, 67: 2284844, 74140: 2344576, 74144: 2353906, 74151: 2
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | --------------------------------------------------
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | 
[2025-11-26 20:42:06] 2025-11-27 01:41:32,768 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 20:42:06] 2025-11-27 01:41:32,794 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,794 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,794 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,794 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:42:06] 2025-11-27 01:41:32,795 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,796 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:42:06] 2025-11-27 01:41:32,796 | INFO     | job 6896219672 has completed (purged errors)
[2025-11-26 20:42:06] 2025-11-27 01:41:32,796 | INFO     | overall cleanup function is called
[2025-11-26 20:42:06] 2025-11-27 01:41:33,816 | INFO     | --- collectZombieJob: --- 10, [1134538]
[2025-11-26 20:42:06] 2025-11-27 01:41:33,816 | INFO     | zombie collector waiting for pid 1134538
[2025-11-26 20:42:06] 2025-11-27 01:41:33,816 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:42:06] 2025-11-27 01:41:33,816 | INFO     | collected zombie processes
[2025-11-26 20:42:06] 2025-11-27 01:41:33,816 | INFO     | will attempt to kill all subprocesses of pid=1134538
[2025-11-26 20:42:06] 2025-11-27 01:41:34,202 | INFO     | process IDs to be killed: [1134538] (in reverse order)
[2025-11-26 20:42:06] 2025-11-27 01:41:34,352 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:42:06] 2025-11-27 01:41:34,352 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:42:06] 2025-11-27 01:41:34,368 | INFO     | did not find any defunct processes belonging to 1134538
[2025-11-26 20:42:06] 2025-11-27 01:41:34,385 | INFO     | did not find any defunct processes belonging to 1134538
[2025-11-26 20:42:06] 2025-11-27 01:41:34,386 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:42:06] 2025-11-27 01:41:34,387 | INFO     | ready for new job
[2025-11-26 20:42:06] 2025-11-27 01:41:34,387 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:42:06] 2025-11-27 01:41:34,393 | INFO     | ***************************************
[2025-11-26 20:42:06] 2025-11-27 01:41:34,393 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:42:06] 2025-11-27 01:41:34,393 | INFO     | ***************************************
[2025-11-26 20:42:06] 2025-11-27 01:41:34,394 | INFO     | 
[2025-11-26 20:42:06] 2025-11-27 01:41:34,397 | INFO     | architecture information:
[2025-11-26 20:42:06] 2025-11-27 01:41:34,398 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:42:06] 2025-11-27 01:41:34,416 | INFO     | cat /etc/os-release:
[2025-11-26 20:42:06] NAME="CentOS Linux"
[2025-11-26 20:42:06] VERSION="7 (Core)"
[2025-11-26 20:42:06] ID="centos"
[2025-11-26 20:42:06] ID_LIKE="rhel fedora"
[2025-11-26 20:42:06] VERSION_ID="7"
[2025-11-26 20:42:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:42:06] ANSI_COLOR="0;31"
[2025-11-26 20:42:06] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:42:06] HOME_URL="https://www.centos.org/"
[2025-11-26 20:42:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:42:06] 
[2025-11-26 20:42:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:42:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:42:06] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:42:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:42:06] 
[2025-11-26 20:42:06] 2025-11-27 01:41:34,417 | INFO     | ***************************************
[2025-11-26 20:42:06] 2025-11-27 01:41:34,919 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 20:42:06] 2025-11-27 01:41:34,938 | INFO     | sufficient remaining disk space (88718966784 B)
[2025-11-26 20:42:06] 2025-11-27 01:41:34,939 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:42:06] 2025-11-27 01:41:34,939 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:42:06] 2025-11-27 01:41:34,939 | INFO     | update_server=False
[2025-11-26 20:42:06] 2025-11-27 01:41:34,939 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:42:06] 2025-11-27 01:41:34,939 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:42:06] 2025-11-27 01:41:34,940 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:42:06] 2025-11-27 01:41:34,940 | INFO     | aborting loop
[2025-11-26 20:42:06] 2025-11-27 01:41:35,027 | INFO     | all data control threads have been joined
[2025-11-26 20:42:06] 2025-11-27 01:41:35,845 | INFO     | all payload control threads have been joined
[2025-11-26 20:42:06] 2025-11-27 01:41:35,944 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:35,945 | INFO     | all job control threads have been joined
[2025-11-26 20:42:06] 2025-11-27 01:41:35,945 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:35,957 | INFO     | [job] validate thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:36,032 | INFO     | [data] control thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:36,218 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:36,572 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:36,641 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:36,778 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:42:06] 2025-11-27 01:41:36,846 | INFO     | [payload] control thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:36,946 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:36,957 | INFO     | [job] control thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:37,176 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:37,189 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:37,336 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:37,778 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:42:06] 2025-11-27 01:41:38,784 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:40,790 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:45,487 | INFO     | job.realtimelogging is not enabled
[2025-11-26 20:42:06] 2025-11-27 01:41:46,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:42:06] 2025-11-27 01:41:49,552 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:42:06] 2025-11-27 01:41:49,585 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140639594137408)>', '<ExcThread(monitor, started 140638955755264)>']
[2025-11-26 20:42:06] 2025-11-27 01:41:54,610 | INFO     | all workflow threads have been joined
[2025-11-26 20:42:06] 2025-11-27 01:41:54,612 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:42:06] 2025-11-27 01:41:54,613 | INFO     | traces error code: 0
[2025-11-26 20:42:06] 2025-11-27 01:41:54,613 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:42:06] 2025-11-27 01:42:06,086 | INFO     | PID=1070331 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:42:06] 2025-11-27 01:42:06,086 | INFO     | .. there are 34 such processes running
[2025-11-26 20:42:06] 2025-11-27 01:42:06,086 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:42:06] 2025-11-27 01:42:06,086 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:42:06] 2025-11-27 01:42:06,086 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:42:06] 2025-11-27 01:42:06,086 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:42:06] 2025-11-27 01:42:06,087 | INFO     | [monitor] control thread has ended
[2025-11-26 20:42:06] 2025-11-27 01:42:06,397 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:42:06] 2025-11-27 01:42:06,403 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:42:06] 2025-11-27 01:42:06,407 [wrapper] pilotpid: 1070331
[2025-11-26 20:42:06] 2025-11-27 01:42:06,411 [wrapper] Pilot exit status: 0
[2025-11-26 20:42:06] 2025-11-27 01:42:06,430 [wrapper] pandaids: 6896219672
[2025-11-26 20:42:06] 2025-11-27 01:42:06,527 [wrapper] cleanup supervisor_pilot 1318220 1070332
[2025-11-26 20:42:06] 2025-11-27 01:42:06,531 [wrapper] Test setup, not cleaning
[2025-11-26 20:42:06] 2025-11-27 01:42:06,538 [wrapper] apfmon messages muted
[2025-11-26 20:42:06] 2025-11-27 01:42:06,548 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:42:06] 2025-11-27 01:42:06,553 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:42:06]  *** Error codes and diagnostics ***
[2025-11-26 20:42:06]     "exeErrorCode": 0,
[2025-11-26 20:42:06]     "exeErrorDiag": "",
[2025-11-26 20:42:06]     "pilotErrorCode": 0,
[2025-11-26 20:42:06]     "pilotErrorDiag": "",
[2025-11-26 20:42:06]  *** Listing of results directory ***
[2025-11-26 20:42:06] total 1328900
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:57 queuedata.json
[2025-11-26 20:42:06] -rwx------. 1 boincer umatlas     36292 Nov 24 14:59 runpilot2-wrapper.sh
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:42:06] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-26 20:42:06] -rw-r--r--. 2 boincer umatlas 413739285 Nov 26 00:01 EVNT.47483658._001415.pool.root.1
[2025-11-26 20:42:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 20:42:06] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-26 20:42:06] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 00:01 input.tar.gz
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 00:01 pandaJob.out
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-26 20:42:06] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:25 boinc_task_state.xml
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas      6905 Nov 26 20:39 init_data.xml
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas 919064965 Nov 26 20:40 HITS.47556149._004011.pool.root.1
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas        95 Nov 26 20:41 pilot_heartbeat.json
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas      1049 Nov 26 20:41 memory_monitor_summary.json
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:41 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas   2332212 Nov 26 20:41 log.47556149._004011.job.log.tgz.1
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas      8590 Nov 26 20:41 heartbeat.json
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:42 boinc_mmap_file
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:42 wrapper_checkpoint.txt
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas       823 Nov 26 20:42 pilotlog.txt
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas   9701709 Nov 26 20:42 log.47556149._004011.job.log.1
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas       353 Nov 26 20:42 output.list
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:42 runtime_log
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas  12052480 Nov 26 20:42 result.tar.gz
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas       661 Nov 26 20:42 sBcKDm9trh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmLuLKDmmU24Ko.diag
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 20:42 runtime_log.err
[2025-11-26 20:42:06] -rw-r--r--. 1 boincer umatlas     21840 Nov 26 20:42 stderr.txt
[2025-11-26 20:42:06] HITS file was successfully produced:
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas 919064965 Nov 26 20:40 shared/HITS.pool.root.1
[2025-11-26 20:42:06]  *** Contents of shared directory: ***
[2025-11-26 20:42:06] total 1313948
[2025-11-26 20:42:06] -rw-r--r--. 2 boincer umatlas 413739285 Nov 26 00:01 ATLAS.root_0
[2025-11-26 20:42:06] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 20:42:06] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 00:01 input.tar.gz
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas 919064965 Nov 26 20:40 HITS.pool.root.1
[2025-11-26 20:42:06] -rw-------. 1 boincer umatlas  12052480 Nov 26 20:42 result.tar.gz
20:42:08 (1047700): run_atlas exited; CPU time 197946.615425
20:42:08 (1047700): called boinc_finish(0)

</stderr_txt>
]]>

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