Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:39 (3851621): wrapper (7.7.26015): starting
00:02:39 (3851621): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:02:39] Arguments: --nthreads 12
[2025-11-27 00:02:39] Threads: 12
[2025-11-27 00:02:39] Checking for CVMFS
[2025-11-27 00:02:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:02:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:02:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:02:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:02:41] 2.13.3.0 11250 31044 329288 153347 0 77 30696748 32935937 18520 16776704 0 99157928 99.484 132571902 39544 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-27 00:02:41] CVMFS is ok
[2025-11-27 00:02:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:02:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:02:41] Further information can be found at the LHC@home message board.
[2025-11-27 00:02:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:02:41] Checking for apptainer binary...
[2025-11-27 00:02:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:02:41] Running /usr/bin/apptainer --version
[2025-11-27 00:02:41] apptainer version 1.4.4-1.el9
[2025-11-27 00:02:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:02:42] c6-2-29-1.aglt2.org
[2025-11-27 00:02:42] apptainer works
[2025-11-27 00:02:42] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:02:42] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:02:42] Starting ATLAS job with PandaID=6896218922
[2025-11-27 00:02:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-28 06:08:27]  *** The last 200 lines of the pilot log: ***
[2025-11-28 06:08:27] 2025-11-28 11:07:24,914 | INFO     | time since job start (108196s) is within the limit (172800.0s)
[2025-11-28 06:08:27] 2025-11-28 11:07:26,800 | INFO     | monitor loop #6912: job 0:6896218922 is in state 'finished'
[2025-11-28 06:08:27] 2025-11-28 11:07:26,800 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:08:27] 2025-11-28 11:07:26,934 | INFO     | time since job start (108198s) is within the limit (172800.0s)
[2025-11-28 06:08:27] 2025-11-28 11:07:28,942 | INFO     | time since job start (108200s) is within the limit (172800.0s)
[2025-11-28 06:08:27] 2025-11-28 11:07:29,305 | INFO     | monitor loop #6913: job 0:6896218922 is in state 'finished'
[2025-11-28 06:08:27] 2025-11-28 11:07:29,305 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:08:27] 2025-11-28 11:07:30,955 | INFO     | time since job start (108202s) is within the limit (172800.0s)
[2025-11-28 06:08:27] 2025-11-28 11:07:31,810 | INFO     | monitor loop #6914: job 0:6896218922 is in state 'finished'
[2025-11-28 06:08:27] 2025-11-28 11:07:31,810 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:08:27] 2025-11-28 11:07:32,962 | INFO     | time since job start (108204s) is within the limit (172800.0s)
[2025-11-28 06:08:27] 2025-11-28 11:07:34,315 | INFO     | monitor loop #6915: job 0:6896218922 is in state 'finished'
[2025-11-28 06:08:27] 2025-11-28 11:07:34,316 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:08:27] 2025-11-28 11:07:34,969 | INFO     | time since job start (108206s) is within the limit (172800.0s)
[2025-11-28 06:08:27] 2025-11-28 11:07:36,821 | INFO     | monitor loop #6916: job 0:6896218922 is in state 'finished'
[2025-11-28 06:08:27] 2025-11-28 11:07:36,821 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-28 06:08:27] 2025-11-28 11:07:37,043 | INFO     | time since job start (108209s) is within the limit (172800.0s)
[2025-11-28 06:08:27] 2025-11-28 11:07:37,642 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-28 06:08:27] 2025-11-28 11:07:37,645 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2905.9027678571424
[2025-11-28 06:08:27] 2025-11-28 11:07:37,655 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6896218922/memory_monitor_summary.json (trf name=prmon)
[2025-11-28 06:08:27] 2025-11-28 11:07:37,657 | INFO     | extracted standard info from prmon json
[2025-11-28 06:08:27] 2025-11-28 11:07:37,657 | INFO     | extracted standard memory fields from prmon json
[2025-11-28 06:08:27] 2025-11-28 11:07:37,657 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-28 06:08:27] 2025-11-28 11:07:37,873 | INFO     | fitting pss+swap vs Time
[2025-11-28 06:08:27] 2025-11-28 11:07:37,876 | INFO     | sum of square deviations: 1722412359130.387
[2025-11-28 06:08:27] 2025-11-28 11:07:37,963 | INFO     | sum of deviations: 14614570517624.031
[2025-11-28 06:08:27] 2025-11-28 11:07:37,964 | INFO     | mean x: 1764274023.175607
[2025-11-28 06:08:27] 2025-11-28 11:07:37,964 | INFO     | mean y: 3480608.662337662
[2025-11-28 06:08:27] 2025-11-28 11:07:37,964 | INFO     | intersect: -14966283738.087975
[2025-11-28 06:08:27] 2025-11-28 11:07:37,967 | INFO     | chi2: 24.86967295940344
[2025-11-28 06:08:27] 2025-11-28 11:07:37,970 | INFO     | sum of square deviations: 1707866312679.1528
[2025-11-28 06:08:27] 2025-11-28 11:07:38,029 | INFO     | sum of deviations: 15368971359797.67
[2025-11-28 06:08:27] 2025-11-28 11:07:38,029 | INFO     | mean x: 1764273870.6817667
[2025-11-28 06:08:27] 2025-11-28 11:07:38,029 | INFO     | mean y: 3488517.061721404
[2025-11-28 06:08:27] 2025-11-28 11:07:38,029 | INFO     | intersect: -15873090573.494652
[2025-11-28 06:08:27] 2025-11-28 11:07:38,031 | INFO     | chi2: 21.375683464000762
[2025-11-28 06:08:27] 2025-11-28 11:07:38,031 | INFO     | current chi2=21.375683464000762 (change=14.049197595425442 %)
[2025-11-28 06:08:27] 2025-11-28 11:07:38,031 | INFO     | right removable region: 1765
[2025-11-28 06:08:27] 2025-11-28 11:07:38,033 | INFO     | sum of square deviations: 1707863962349.154
[2025-11-28 06:08:27] 2025-11-28 11:07:38,086 | INFO     | sum of deviations: 13725967972452.08
[2025-11-28 06:08:27] 2025-11-28 11:07:38,087 | INFO     | mean x: 1764274175.6817667
[2025-11-28 06:08:27] 2025-11-28 11:07:38,087 | INFO     | mean y: 3489922.9235560587
[2025-11-28 06:08:27] 2025-11-28 11:07:38,087 | INFO     | intersect: -14175842485.21672
[2025-11-28 06:08:27] 2025-11-28 11:07:38,089 | INFO     | chi2: 20.35513328703389
[2025-11-28 06:08:27] 2025-11-28 11:07:38,089 | INFO     | current chi2=20.35513328703389 (change=18.152790668936255 %)
[2025-11-28 06:08:27] 2025-11-28 11:07:38,089 | INFO     | left removable region: 10
[2025-11-28 06:08:27] 2025-11-28 11:07:38,091 | INFO     | sum of square deviations: 1676149333688.7417
[2025-11-28 06:08:27] 2025-11-28 11:07:38,146 | INFO     | sum of deviations: 13872336438905.836
[2025-11-28 06:08:27] 2025-11-28 11:07:38,146 | INFO     | mean x: 1764274145.194302
[2025-11-28 06:08:27] 2025-11-28 11:07:38,146 | INFO     | mean y: 3508036.7424501423
[2025-11-28 06:08:27] 2025-11-28 11:07:38,146 | INFO     | intersect: -14598176920.967445
[2025-11-28 06:08:27] 2025-11-28 11:07:38,148 | INFO     | chi2: 12.569799118007404
[2025-11-28 06:08:27] 2025-11-28 11:07:38,149 | INFO     | current memory leak: 8.28 B/s (using 1755 data points, chi2=12.57)
[2025-11-28 06:08:27] 2025-11-28 11:07:38,150 | INFO     | could have reported an average CPU frequency of 2777 MHz (62 samples)
[2025-11-28 06:08:27] 2025-11-28 11:07:38,151 | INFO     | ..............................
[2025-11-28 06:08:27] 2025-11-28 11:07:38,151 | INFO     | . Timing measurements:
[2025-11-28 06:08:27] 2025-11-28 11:07:38,151 | INFO     | . get job = 0 s
[2025-11-28 06:08:27] 2025-11-28 11:07:38,151 | INFO     | . initial setup = 6 s
[2025-11-28 06:08:27] 2025-11-28 11:07:38,151 | INFO     | . payload setup = 57 s
[2025-11-28 06:08:27] 2025-11-28 11:07:38,151 | INFO     | . stage-in = 0 s
[2025-11-28 06:08:27] 2025-11-28 11:07:38,151 | INFO     | . payload execution = 108021 s
[2025-11-28 06:08:27] 2025-11-28 11:07:38,151 | INFO     | . stage-out = 6 s
[2025-11-28 06:08:27] 2025-11-28 11:07:38,151 | INFO     | . log creation = 1 s
[2025-11-28 06:08:27] 2025-11-28 11:07:38,151 | INFO     | ..............................
[2025-11-28 06:08:27] 2025-11-28 11:07:38,244 | INFO     | 
[2025-11-28 06:08:27] 2025-11-28 11:07:38,244 | INFO     | job summary report
[2025-11-28 06:08:27] 2025-11-28 11:07:38,244 | INFO     | --------------------------------------------------
[2025-11-28 06:08:27] 2025-11-28 11:07:38,244 | INFO     | PanDA job id: 6896218922
[2025-11-28 06:08:27] 2025-11-28 11:07:38,244 | INFO     | task id: 47556149
[2025-11-28 06:08:27] 2025-11-28 11:07:38,244 | INFO     | errors: (none)
[2025-11-28 06:08:27] 2025-11-28 11:07:38,244 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | pilot state: finished 
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | transexitcode: 0
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | exeerrorcode: 0
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | exeerrordiag: 
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | exitcode: 0
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | exitmsg: OK
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | cpuconsumptiontime: 266855 s
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | nevents: 1000
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | neventsw: 0
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | pid: 3866614
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | pgrp: 3866614
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | corecount: 12
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | event service: False
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | sizes: {0: 2284144, 1: 2284172, 2: 2284371, 15: 2284371, 26: 2284399, 37: 2284427, 45: 2284845, 49: 2284873, 108083: 2360509, 108091: 2369503, 108092: 2369559, 108
[2025-11-28 06:08:27] 2025-11-28 11:07:38,245 | INFO     | --------------------------------------------------
[2025-11-28 06:08:27] 2025-11-28 11:07:38,246 | INFO     | 
[2025-11-28 06:08:27] 2025-11-28 11:07:38,246 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-28 06:08:27] 2025-11-28 11:07:38,281 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,282 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,283 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,283 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,283 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,283 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,283 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-28 06:08:27] 2025-11-28 11:07:38,283 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,283 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-28 06:08:27] 2025-11-28 11:07:38,283 | INFO     | job 6896218922 has completed (purged errors)
[2025-11-28 06:08:27] 2025-11-28 11:07:38,283 | INFO     | overall cleanup function is called
[2025-11-28 06:08:27] 2025-11-28 11:07:39,302 | INFO     | --- collectZombieJob: --- 10, [3866614]
[2025-11-28 06:08:27] 2025-11-28 11:07:39,302 | INFO     | zombie collector waiting for pid 3866614
[2025-11-28 06:08:27] 2025-11-28 11:07:39,302 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-28 06:08:27] 2025-11-28 11:07:39,303 | INFO     | collected zombie processes
[2025-11-28 06:08:27] 2025-11-28 11:07:39,303 | INFO     | will attempt to kill all subprocesses of pid=3866614
[2025-11-28 06:08:27] 2025-11-28 11:07:40,025 | INFO     | process IDs to be killed: [3866614] (in reverse order)
[2025-11-28 06:08:27] 2025-11-28 11:07:40,391 | WARNING  | found no corresponding commands to process id(s)
[2025-11-28 06:08:27] 2025-11-28 11:07:40,392 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-28 06:08:27] 2025-11-28 11:07:40,423 | INFO     | did not find any defunct processes belonging to 3866614
[2025-11-28 06:08:27] 2025-11-28 11:07:40,498 | INFO     | did not find any defunct processes belonging to 3866614
[2025-11-28 06:08:27] 2025-11-28 11:07:40,499 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-28 06:08:27] 2025-11-28 11:07:40,500 | INFO     | ready for new job
[2025-11-28 06:08:27] 2025-11-28 11:07:40,500 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-28 06:08:27] 2025-11-28 11:07:40,515 | INFO     | ***************************************
[2025-11-28 06:08:27] 2025-11-28 11:07:40,516 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-28 06:08:27] 2025-11-28 11:07:40,516 | INFO     | ***************************************
[2025-11-28 06:08:27] 2025-11-28 11:07:40,516 | INFO     | 
[2025-11-28 06:08:27] 2025-11-28 11:07:40,523 | INFO     | architecture information:
[2025-11-28 06:08:27] 2025-11-28 11:07:40,524 | INFO     | executing command: cat /etc/os-release
[2025-11-28 06:08:27] 2025-11-28 11:07:40,587 | INFO     | cat /etc/os-release:
[2025-11-28 06:08:27] NAME="CentOS Linux"
[2025-11-28 06:08:27] VERSION="7 (Core)"
[2025-11-28 06:08:27] ID="centos"
[2025-11-28 06:08:27] ID_LIKE="rhel fedora"
[2025-11-28 06:08:27] VERSION_ID="7"
[2025-11-28 06:08:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-28 06:08:27] ANSI_COLOR="0;31"
[2025-11-28 06:08:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-28 06:08:27] HOME_URL="https://www.centos.org/"
[2025-11-28 06:08:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-28 06:08:27] 
[2025-11-28 06:08:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-28 06:08:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-28 06:08:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-28 06:08:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-28 06:08:27] 
[2025-11-28 06:08:27] 2025-11-28 11:07:40,587 | INFO     | ***************************************
[2025-11-28 06:08:27] 2025-11-28 11:07:41,090 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-28 06:08:27] 2025-11-28 11:07:41,172 | INFO     | sufficient remaining disk space (70545047552 B)
[2025-11-28 06:08:27] 2025-11-28 11:07:41,174 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-28 06:08:27] 2025-11-28 11:07:41,175 | INFO     | current server update state: UPDATING_FINAL
[2025-11-28 06:08:27] 2025-11-28 11:07:41,176 | INFO     | update_server=False
[2025-11-28 06:08:27] 2025-11-28 11:07:41,176 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-28 06:08:27] 2025-11-28 11:07:41,177 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:08:27] 2025-11-28 11:07:41,177 | INFO     | aborting loop
[2025-11-28 06:08:27] 2025-11-28 11:07:41,177 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-28 06:08:27] 2025-11-28 11:07:41,389 | INFO     | all job control threads have been joined
[2025-11-28 06:08:27] 2025-11-28 11:07:42,034 | INFO     | all data control threads have been joined
[2025-11-28 06:08:27] 2025-11-28 11:07:42,182 | INFO     | [job] retrieve thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:42,183 | INFO     | [job] job monitor thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:42,418 | INFO     | [job] control thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:42,500 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:42,617 | INFO     | all payload control threads have been joined
[2025-11-28 06:08:27] 2025-11-28 11:07:43,040 | INFO     | [data] control thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:43,052 | INFO     | [data] copytool_in thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:43,144 | INFO     | [payload] failed_post thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:43,184 | INFO     | [data] copytool_out thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:43,285 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-28 06:08:27] 2025-11-28 11:07:43,310 | INFO     | [job] create_data_payload thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:43,317 | INFO     | [job] validate thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:43,352 | INFO     | [payload] validate_pre thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:43,455 | INFO     | [payload] execute_payloads thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:43,623 | INFO     | [payload] control thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:43,688 | INFO     | [payload] validate_post thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:44,291 | INFO     | [job] queue monitor thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:07:44,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-28 06:08:27] 2025-11-28 11:07:48,493 | INFO     | [data] queue_monitor thread has finished
[2025-11-28 06:08:27] 2025-11-28 11:08:11,321 | INFO     | PID=3857320 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-28 06:08:27] 2025-11-28 11:08:11,321 | INFO     | .. there are 18 such processes running
[2025-11-28 06:08:27] 2025-11-28 11:08:11,322 | INFO     | found 0 job(s) in 20 queues
[2025-11-28 06:08:27] 2025-11-28 11:08:11,323 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-28 06:08:27] 2025-11-28 11:08:11,323 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-28 06:08:27] 2025-11-28 11:08:19,474 | INFO     | [monitor] cgroup control has ended
[2025-11-28 06:08:27] 2025-11-28 11:08:21,485 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139951895115584)>', '<ExcThread(monitor, started 139951526090496)>']
[2025-11-28 06:08:27] 2025-11-28 11:08:22,389 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-28 06:08:27] 2025-11-28 11:08:22,389 | INFO     | [monitor] control thread has ended
[2025-11-28 06:08:27] 2025-11-28 11:08:26,511 | INFO     | all workflow threads have been joined
[2025-11-28 06:08:27] 2025-11-28 11:08:26,512 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-28 06:08:27] 2025-11-28 11:08:26,512 | INFO     | traces error code: 0
[2025-11-28 06:08:27] 2025-11-28 11:08:26,513 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-28 06:08:27] 2025-11-28 11:08:26,742 [wrapper] ==== pilot stdout END ====
[2025-11-28 06:08:27] 2025-11-28 11:08:26,808 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-28 06:08:27] 2025-11-28 11:08:26,831 [wrapper] pilotpid: 3857320
[2025-11-28 06:08:27] 2025-11-28 11:08:26,849 [wrapper] Pilot exit status: 0
[2025-11-28 06:08:27] 2025-11-28 11:08:26,931 [wrapper] pandaids: 6896218922
[2025-11-28 06:08:27] 2025-11-28 11:08:27,067 [wrapper] cleanup supervisor_pilot 4193562 3857321
[2025-11-28 06:08:27] 2025-11-28 11:08:27,085 [wrapper] Test setup, not cleaning
[2025-11-28 06:08:27] 2025-11-28 11:08:27,104 [wrapper] apfmon messages muted
[2025-11-28 06:08:27] 2025-11-28 11:08:27,131 [wrapper] ==== wrapper stdout END ====
[2025-11-28 06:08:27] 2025-11-28 11:08:27,204 [wrapper] ==== wrapper stderr END ====
[2025-11-28 06:08:27]  *** Error codes and diagnostics ***
[2025-11-28 06:08:27]     "exeErrorCode": 0,
[2025-11-28 06:08:27]     "exeErrorDiag": "",
[2025-11-28 06:08:27]     "pilotErrorCode": 0,
[2025-11-28 06:08:27]     "pilotErrorDiag": "",
[2025-11-28 06:08:27]  *** Listing of results directory ***
[2025-11-28 06:08:27] total 1347796
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:46 queuedata.json
[2025-11-28 06:08:27] -rwx------. 1 boincer umatlas     36292 Nov 24 14:46 runpilot2-wrapper.sh
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas       100 Nov 27 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-28 06:08:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 27 00:02 run_atlas
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas       105 Nov 27 00:02 job.xml
[2025-11-28 06:08:27] -rw-r--r--. 2 boincer umatlas 410070533 Nov 27 00:02 EVNT.47483658._001409.pool.root.1
[2025-11-28 06:08:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-28 06:08:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 27 00:02 shared
[2025-11-28 06:08:27] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 00:02 input.tar.gz
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas         0 Nov 27 00:02 boinc_lockfile
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas      2786 Nov 27 00:02 pandaJob.out
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas        57 Nov 27 00:02 setup.sh.local
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas    991570 Nov 27 00:04 agis_schedconf.cvmfs.json
[2025-11-28 06:08:27] drwx------. 5 boincer umatlas      4096 Nov 27 00:04 pilot3
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas       533 Nov 28 05:48 boinc_task_state.xml
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas      6845 Nov 28 06:01 init_data.xml
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas 931194220 Nov 28 06:06 HITS.47556149._003952.pool.root.1
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas      1059 Nov 28 06:06 memory_monitor_summary.json
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas   1516240 Nov 28 06:07 agis_ddmendpoints.agis.ALL.json
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas   3209805 Nov 28 06:07 log.47556149._003952.job.log.tgz.1
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas      8630 Nov 28 06:07 heartbeat.json
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas        95 Nov 28 06:08 pilot_heartbeat.json
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 28 06:08 boinc_mmap_file
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas      4824 Nov 28 06:08 pilotlog.txt
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas        29 Nov 28 06:08 wrapper_checkpoint.txt
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas  14267983 Nov 28 06:08 log.47556149._003952.job.log.1
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas       353 Nov 28 06:08 output.list
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas       620 Nov 28 06:08 runtime_log
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas  17500160 Nov 28 06:08 result.tar.gz
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas      9351 Nov 28 06:08 runtime_log.err
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas       663 Nov 28 06:08 cMuNDmGhrh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWtLKDmtY3Lam.diag
[2025-11-28 06:08:27] -rw-r--r--. 1 boincer umatlas     21835 Nov 28 06:08 stderr.txt
[2025-11-28 06:08:27] HITS file was successfully produced:
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas 931194220 Nov 28 06:06 shared/HITS.pool.root.1
[2025-11-28 06:08:27]  *** Contents of shared directory: ***
[2025-11-28 06:08:27] total 1327524
[2025-11-28 06:08:27] -rw-r--r--. 2 boincer umatlas 410070533 Nov 27 00:02 ATLAS.root_0
[2025-11-28 06:08:27] -rw-r--r--. 2 boincer umatlas     15847 Nov 27 00:02 start_atlas.sh
[2025-11-28 06:08:27] -rw-r--r--. 2 boincer umatlas    590096 Nov 27 00:02 input.tar.gz
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas 931194220 Nov 28 06:06 HITS.pool.root.1
[2025-11-28 06:08:27] -rw-------. 1 boincer umatlas  17500160 Nov 28 06:08 result.tar.gz
06:08:28 (3851621): run_atlas exited; CPU time 268873.796448
06:08:28 (3851621): called boinc_finish(0)

</stderr_txt>
]]>

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