Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
11:13:08 (2225874): wrapper (7.7.26015): starting
11:13:08 (2225874): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 11:13:08] Arguments: --nthreads 8
[2025-11-26 11:13:08] Threads: 8
[2025-11-26 11:13:08] Checking for CVMFS
[2025-11-26 11:13:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 11:13:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 11:13:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 11:13:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 11:13:09] 2.13.3.0 7558 30275 341124 153326 3 388 24255892 32935936 24889 16776704 0 126088840 99.536 153775290 38447 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 11:13:09] CVMFS is ok
[2025-11-26 11:13:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 11:13:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 11:13:09] Further information can be found at the LHC@home message board.
[2025-11-26 11:13:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 11:13:09] Checking for apptainer binary...
[2025-11-26 11:13:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 11:13:09] Running /usr/bin/apptainer --version
[2025-11-26 11:13:09] apptainer version 1.4.4-1.el9
[2025-11-26 11:13:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 11:13:09] c6-6-39-2.aglt2.org
[2025-11-26 11:13:09] apptainer works
[2025-11-26 11:13:09] Set ATHENA_PROC_NUMBER=8
[2025-11-26 11:13:09] Set ATHENA_CORE_NUMBER=8
[2025-11-26 11:13:10] Starting ATLAS job with PandaID=6896714631
[2025-11-26 11:13:10] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 22:58:48]  *** The last 200 lines of the pilot log: ***
[2025-11-26 22:58:49] 2025-11-27 03:57:44,644 | INFO     | sum of square deviations: 102752685358.87886
[2025-11-26 22:58:49] 2025-11-27 03:57:44,673 | INFO     | sum of deviations: 664429633197.0526
[2025-11-26 22:58:49] 2025-11-27 03:57:44,673 | INFO     | mean x: 1764194719.3294797
[2025-11-26 22:58:49] 2025-11-27 03:57:44,674 | INFO     | mean y: 2904159.3945086705
[2025-11-26 22:58:49] 2025-11-27 03:57:44,674 | INFO     | intersect: -11404907190.335585
[2025-11-26 22:58:49] 2025-11-27 03:57:44,675 | INFO     | chi2: 10.381827114756861
[2025-11-26 22:58:49] 2025-11-27 03:57:44,684 | INFO     | sum of square deviations: 100541600360.41331
[2025-11-26 22:58:49] 2025-11-27 03:57:44,695 | INFO     | time since job start (42256s) is within the limit (172800.0s)
[2025-11-26 22:58:49] 2025-11-27 03:57:44,709 | INFO     | sum of deviations: 890809442943.106
[2025-11-26 22:58:49] 2025-11-27 03:57:44,710 | INFO     | mean x: 1764194566.8355167
[2025-11-26 22:58:49] 2025-11-27 03:57:44,710 | INFO     | mean y: 2919767.151382824
[2025-11-26 22:58:49] 2025-11-27 03:57:44,710 | INFO     | intersect: -15628034720.268717
[2025-11-26 22:58:49] 2025-11-27 03:57:44,711 | INFO     | chi2: 7.251066647983243
[2025-11-26 22:58:49] 2025-11-27 03:57:44,711 | INFO     | current chi2=7.251066647983243 (change=30.156160685083222 %)
[2025-11-26 22:58:49] 2025-11-27 03:57:44,711 | INFO     | sum of square deviations: 98362469449.39738
[2025-11-26 22:58:49] 2025-11-27 03:57:44,749 | INFO     | sum of deviations: 1137891262086.2324
[2025-11-26 22:58:49] 2025-11-27 03:57:44,749 | INFO     | mean x: 1764194414.3416421
[2025-11-26 22:58:49] 2025-11-27 03:57:44,749 | INFO     | mean y: 2937056.900293255
[2025-11-26 22:58:49] 2025-11-27 03:57:44,749 | INFO     | intersect: -20405877605.214634
[2025-11-26 22:58:49] 2025-11-27 03:57:44,750 | INFO     | chi2: 3.7241268230675835
[2025-11-26 22:58:49] 2025-11-27 03:57:44,750 | INFO     | current chi2=3.7241268230675835 (change=48.64028971374323 %)
[2025-11-26 22:58:49] 2025-11-27 03:57:44,751 | INFO     | sum of square deviations: 96215060063.32948
[2025-11-26 22:58:49] 2025-11-27 03:57:44,782 | INFO     | sum of deviations: 1273256333600.9905
[2025-11-26 22:58:49] 2025-11-27 03:57:44,782 | INFO     | mean x: 1764194261.8478582
[2025-11-26 22:58:49] 2025-11-27 03:57:44,783 | INFO     | mean y: 2946650.4756277697
[2025-11-26 22:58:49] 2025-11-27 03:57:44,783 | INFO     | intersect: -23343414263.520546
[2025-11-26 22:58:49] 2025-11-27 03:57:44,783 | INFO     | chi2: 2.289486625890692
[2025-11-26 22:58:49] 2025-11-27 03:57:44,784 | INFO     | current chi2=2.289486625890692 (change=38.52286093724302 %)
[2025-11-26 22:58:49] 2025-11-27 03:57:44,789 | INFO     | sum of square deviations: 94098933034.21283
[2025-11-26 22:58:49] 2025-11-27 03:57:44,816 | INFO     | sum of deviations: 1288942079649.7637
[2025-11-26 22:58:49] 2025-11-27 03:57:44,816 | INFO     | mean x: 1764194109.3467262
[2025-11-26 22:58:49] 2025-11-27 03:57:44,816 | INFO     | mean y: 2947772.211309524
[2025-11-26 22:58:49] 2025-11-27 03:57:44,816 | INFO     | intersect: -24162512460.801777
[2025-11-26 22:58:49] 2025-11-27 03:57:44,817 | INFO     | chi2: 2.1654114592683236
[2025-11-26 22:58:49] 2025-11-27 03:57:44,817 | INFO     | current chi2=2.1654114592683236 (change=5.4193444599877765 %)
[2025-11-26 22:58:49] 2025-11-27 03:57:44,817 | INFO     | right removable region: 671
[2025-11-26 22:58:49] 2025-11-27 03:57:44,818 | INFO     | sum of square deviations: 100541292189.08308
[2025-11-26 22:58:49] 2025-11-27 03:57:44,856 | INFO     | sum of deviations: 481561921041.1042
[2025-11-26 22:58:49] 2025-11-27 03:57:44,856 | INFO     | mean x: 1764194871.8340611
[2025-11-26 22:58:49] 2025-11-27 03:57:44,857 | INFO     | mean y: 2916747.790393013
[2025-11-26 22:58:49] 2025-11-27 03:57:44,857 | INFO     | intersect: -8447035038.919609
[2025-11-26 22:58:49] 2025-11-27 03:57:44,857 | INFO     | chi2: 8.400039837388086
[2025-11-26 22:58:49] 2025-11-27 03:57:44,858 | INFO     | current chi2=8.400039837388086 (change=19.08900288420174 %)
[2025-11-26 22:58:49] 2025-11-27 03:57:44,858 | INFO     | left removable region: 10
[2025-11-26 22:58:49] 2025-11-27 03:57:44,858 | INFO     | sum of square deviations: 89553068398.05737
[2025-11-26 22:58:49] 2025-11-27 03:57:44,899 | INFO     | sum of deviations: 1053235511048.5538
[2025-11-26 22:58:49] 2025-11-27 03:57:44,899 | INFO     | mean x: 1764194383.8547654
[2025-11-26 22:58:49] 2025-11-27 03:57:44,900 | INFO     | mean y: 2964495.443267776
[2025-11-26 22:58:49] 2025-11-27 03:57:44,900 | INFO     | intersect: -20745762563.344696
[2025-11-26 22:58:49] 2025-11-27 03:57:44,901 | INFO     | chi2: 0.07691250420784722
[2025-11-26 22:58:49] 2025-11-27 03:57:44,901 | INFO     | current memory leak: 11.76 B/s (using 661 data points, chi2=0.08)
[2025-11-26 22:58:49] 2025-11-27 03:57:44,902 | INFO     | could have reported an average CPU frequency of 2916 MHz (27 samples)
[2025-11-26 22:58:49] 2025-11-27 03:57:44,914 | INFO     | ..............................
[2025-11-26 22:58:49] 2025-11-27 03:57:44,914 | INFO     | . Timing measurements:
[2025-11-26 22:58:49] 2025-11-27 03:57:44,914 | INFO     | . get job = 0 s
[2025-11-26 22:58:49] 2025-11-27 03:57:44,914 | INFO     | . initial setup = 2 s
[2025-11-26 22:58:49] 2025-11-27 03:57:44,914 | INFO     | . payload setup = 9 s
[2025-11-26 22:58:49] 2025-11-27 03:57:44,914 | INFO     | . stage-in = 0 s
[2025-11-26 22:58:49] 2025-11-27 03:57:44,915 | INFO     | . payload execution = 42189 s
[2025-11-26 22:58:49] 2025-11-27 03:57:44,915 | INFO     | . stage-out = 6 s
[2025-11-26 22:58:49] 2025-11-27 03:57:44,915 | INFO     | . log creation = 1 s
[2025-11-26 22:58:49] 2025-11-27 03:57:44,915 | INFO     | ..............................
[2025-11-26 22:58:49] 2025-11-27 03:57:45,136 | INFO     | 
[2025-11-26 22:58:49] 2025-11-27 03:57:45,136 | INFO     | job summary report
[2025-11-26 22:58:49] 2025-11-27 03:57:45,136 | INFO     | --------------------------------------------------
[2025-11-26 22:58:49] 2025-11-27 03:57:45,136 | INFO     | PanDA job id: 6896714631
[2025-11-26 22:58:49] 2025-11-27 03:57:45,136 | INFO     | task id: 47556161
[2025-11-26 22:58:49] 2025-11-27 03:57:45,136 | INFO     | errors: (none)
[2025-11-26 22:58:49] 2025-11-27 03:57:45,136 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 22:58:49] 2025-11-27 03:57:45,136 | INFO     | pilot state: finished 
[2025-11-26 22:58:49] 2025-11-27 03:57:45,136 | INFO     | transexitcode: 0
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | exeerrorcode: 0
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | exeerrordiag: 
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | exitcode: 0
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | exitmsg: OK
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | cpuconsumptiontime: 242571 s
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | nevents: 1000
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | neventsw: 0
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | pid: 2241358
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | pgrp: 2241358
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | corecount: 8
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | event service: False
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | sizes: {0: 2284264, 7: 2284526, 11: 2284554, 42199: 2330112, 42206: 2339106, 42209: 2339162, 42238: 2339536}
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | --------------------------------------------------
[2025-11-26 22:58:49] 2025-11-27 03:57:45,137 | INFO     | 
[2025-11-26 22:58:49] 2025-11-27 03:57:45,138 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-26 22:58:49] 2025-11-27 03:57:45,268 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,268 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,268 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,268 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,269 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,269 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,269 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,269 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,273 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,273 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,273 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,273 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,273 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,273 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,273 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,273 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,273 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,274 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 22:58:49] 2025-11-27 03:57:45,274 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,274 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 22:58:49] 2025-11-27 03:57:45,274 | INFO     | job 6896714631 has completed (purged errors)
[2025-11-26 22:58:49] 2025-11-27 03:57:45,274 | INFO     | overall cleanup function is called
[2025-11-26 22:58:49] 2025-11-27 03:57:46,301 | INFO     | --- collectZombieJob: --- 10, [2241358]
[2025-11-26 22:58:49] 2025-11-27 03:57:46,301 | INFO     | zombie collector waiting for pid 2241358
[2025-11-26 22:58:49] 2025-11-27 03:57:46,301 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 22:58:49] 2025-11-27 03:57:46,301 | INFO     | collected zombie processes
[2025-11-26 22:58:49] 2025-11-27 03:57:46,301 | INFO     | will attempt to kill all subprocesses of pid=2241358
[2025-11-26 22:58:49] 2025-11-27 03:57:47,082 | INFO     | process IDs to be killed: [2241358] (in reverse order)
[2025-11-26 22:58:49] 2025-11-27 03:57:47,395 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 22:58:49] 2025-11-27 03:57:47,395 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 22:58:49] 2025-11-27 03:57:47,432 | INFO     | did not find any defunct processes belonging to 2241358
[2025-11-26 22:58:49] 2025-11-27 03:57:47,461 | INFO     | did not find any defunct processes belonging to 2241358
[2025-11-26 22:58:49] 2025-11-27 03:57:47,467 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 22:58:49] 2025-11-27 03:57:47,467 | INFO     | ready for new job
[2025-11-26 22:58:49] 2025-11-27 03:57:47,467 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 22:58:49] 2025-11-27 03:57:47,471 | INFO     | ***************************************
[2025-11-26 22:58:49] 2025-11-27 03:57:47,476 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 22:58:49] 2025-11-27 03:57:47,476 | INFO     | ***************************************
[2025-11-26 22:58:49] 2025-11-27 03:57:47,476 | INFO     | 
[2025-11-26 22:58:49] 2025-11-27 03:57:47,479 | INFO     | architecture information:
[2025-11-26 22:58:49] 2025-11-27 03:57:47,492 | INFO     | executing command: cat /etc/os-release
[2025-11-26 22:58:49] 2025-11-27 03:57:47,776 | INFO     | cat /etc/os-release:
[2025-11-26 22:58:49] NAME="CentOS Linux"
[2025-11-26 22:58:49] VERSION="7 (Core)"
[2025-11-26 22:58:49] ID="centos"
[2025-11-26 22:58:49] ID_LIKE="rhel fedora"
[2025-11-26 22:58:49] VERSION_ID="7"
[2025-11-26 22:58:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 22:58:49] ANSI_COLOR="0;31"
[2025-11-26 22:58:49] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 22:58:49] HOME_URL="https://www.centos.org/"
[2025-11-26 22:58:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 22:58:49] 
[2025-11-26 22:58:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 22:58:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 22:58:49] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 22:58:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 22:58:49] 
[2025-11-26 22:58:49] 2025-11-27 03:57:47,777 | INFO     | ***************************************
[2025-11-26 22:58:49] 2025-11-27 03:57:48,280 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-26 22:58:49] 2025-11-27 03:57:48,394 | INFO     | sufficient remaining disk space (69370642432 B)
[2025-11-26 22:58:49] 2025-11-27 03:57:48,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 22:58:49] 2025-11-27 03:57:48,396 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 22:58:49] 2025-11-27 03:57:48,396 | INFO     | update_server=False
[2025-11-26 22:58:49] 2025-11-27 03:57:48,396 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 22:58:49] 2025-11-27 03:57:48,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:58:49] 2025-11-27 03:57:48,396 | INFO     | aborting loop
[2025-11-26 22:58:49] 2025-11-27 03:57:49,032 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 22:58:49] 2025-11-27 03:57:49,253 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 22:58:49] 2025-11-27 03:57:49,260 | INFO     | all data control threads have been joined
[2025-11-26 22:58:49] 2025-11-27 03:57:49,321 | INFO     | all job control threads have been joined
[2025-11-26 22:58:49] 2025-11-27 03:57:49,373 | INFO     | all payload control threads have been joined
[2025-11-26 22:58:49] 2025-11-27 03:57:49,402 | INFO     | [job] retrieve thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:49,418 | INFO     | [job] job monitor thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:49,526 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:49,609 | INFO     | [payload] validate_post thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:49,674 | INFO     | [job] validate thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:49,675 | INFO     | [data] copytool_in thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:49,731 | INFO     | [payload] failed_post thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:50,155 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:50,155 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 22:58:49] 2025-11-27 03:57:50,268 | INFO     | [data] control thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:50,328 | INFO     | [job] control thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:50,381 | INFO     | [payload] control thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:50,899 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:51,161 | INFO     | [job] queue monitor thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:51,259 | INFO     | [data] copytool_out thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:53,041 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:57:58,488 | INFO     | job.realtimelogging is not enabled
[2025-11-26 22:58:49] 2025-11-27 03:57:59,493 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 22:58:49] 2025-11-27 03:58:18,441 | INFO     | PID=2231659 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 22:58:49] 2025-11-27 03:58:18,441 | INFO     | .. there are 39 such processes running
[2025-11-26 22:58:49] 2025-11-27 03:58:18,442 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 22:58:49] 2025-11-27 03:58:18,442 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 22:58:49] 2025-11-27 03:58:18,442 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 22:58:49] 2025-11-27 03:58:29,824 [wrapper] supervise_pilot (15 min periods counter: 48)
[2025-11-26 22:58:49] 2025-11-27 03:58:42,179 | INFO     | [monitor] cgroup control has ended
[2025-11-26 22:58:49] 2025-11-27 03:58:42,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140666128312128)>', '<ExcThread(monitor, started 140665312753408)>']
[2025-11-26 22:58:49] 2025-11-27 03:58:43,619 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 22:58:49] 2025-11-27 03:58:43,619 | INFO     | [monitor] control thread has ended
[2025-11-26 22:58:49] 2025-11-27 03:58:47,701 | INFO     | all workflow threads have been joined
[2025-11-26 22:58:49] 2025-11-27 03:58:47,701 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 22:58:49] 2025-11-27 03:58:47,701 | INFO     | traces error code: 0
[2025-11-26 22:58:49] 2025-11-27 03:58:47,701 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 22:58:49] 2025-11-27 03:58:48,043 [wrapper] ==== pilot stdout END ====
[2025-11-26 22:58:49] 2025-11-27 03:58:48,065 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 22:58:49] 2025-11-27 03:58:48,091 [wrapper] pilotpid: 2231659
[2025-11-26 22:58:49] 2025-11-27 03:58:48,118 [wrapper] Pilot exit status: 0
[2025-11-26 22:58:49] 2025-11-27 03:58:48,256 [wrapper] pandaids: 6896714631
[2025-11-26 22:58:49] 2025-11-27 03:58:48,547 [wrapper] cleanup supervisor_pilot  687422 2231660
[2025-11-26 22:58:49] 2025-11-27 03:58:48,567 [wrapper] Test setup, not cleaning
[2025-11-26 22:58:49] 2025-11-27 03:58:48,586 [wrapper] apfmon messages muted
[2025-11-26 22:58:49] 2025-11-27 03:58:48,600 [wrapper] ==== wrapper stdout END ====
[2025-11-26 22:58:49] 2025-11-27 03:58:48,620 [wrapper] ==== wrapper stderr END ====
[2025-11-26 22:58:49]  *** Error codes and diagnostics ***
[2025-11-26 22:58:49]     "exeErrorCode": 0,
[2025-11-26 22:58:49]     "exeErrorDiag": "",
[2025-11-26 22:58:49]     "pilotErrorCode": 0,
[2025-11-26 22:58:49]     "pilotErrorDiag": "",
[2025-11-26 22:58:49]  *** Listing of results directory ***
[2025-11-26 22:58:49] total 1310812
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-26 22:58:49] -rwx------. 1 boincer umatlas     36292 Nov 25 01:46 runpilot2-wrapper.sh
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:46 queuedata.json
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas       100 Nov 26 11:13 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 22:58:49] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 11:13 run_atlas
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas       105 Nov 26 11:13 job.xml
[2025-11-26 22:58:49] -rw-r--r--. 2 boincer umatlas 408626840 Nov 26 11:13 EVNT.47483658._002126.pool.root.1
[2025-11-26 22:58:49] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 11:13 input.tar.gz
[2025-11-26 22:58:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 11:13 start_atlas.sh
[2025-11-26 22:58:49] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 11:13 shared
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas         0 Nov 26 11:13 boinc_lockfile
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 11:13 pandaJob.out
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas        57 Nov 26 11:13 setup.sh.local
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas    991855 Nov 26 11:13 agis_schedconf.cvmfs.json
[2025-11-26 22:58:49] drwx------. 5 boincer umatlas      4096 Nov 26 11:13 pilot3
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas       533 Nov 26 22:37 boinc_task_state.xml
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas 914491291 Nov 26 22:55 HITS.47556161._001094.pool.root.1
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas      1057 Nov 26 22:57 memory_monitor_summary.json
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas   1516240 Nov 26 22:57 agis_ddmendpoints.agis.ALL.json
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas   1935890 Nov 26 22:57 log.47556161._001094.job.log.tgz.1
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas      8621 Nov 26 22:57 heartbeat.json
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 22:58 init_data.xml
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas        95 Nov 26 22:58 pilot_heartbeat.json
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas        29 Nov 26 22:58 wrapper_checkpoint.txt
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 22:58 boinc_mmap_file
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas      4896 Nov 26 22:58 pilotlog.txt
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas   5679654 Nov 26 22:58 log.47556161._001094.job.log.1
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas       353 Nov 26 22:58 output.list
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas       620 Nov 26 22:58 runtime_log
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas   7639040 Nov 26 22:58 result.tar.gz
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas       661 Nov 26 22:58 yjmLDmdz1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmZDMKDmd1Zyvn.diag
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 22:58 runtime_log.err
[2025-11-26 22:58:49] -rw-r--r--. 1 boincer umatlas     21151 Nov 26 22:58 stderr.txt
[2025-11-26 22:58:49] HITS file was successfully produced:
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas 914491291 Nov 26 22:55 shared/HITS.pool.root.1
[2025-11-26 22:58:49]  *** Contents of shared directory: ***
[2025-11-26 22:58:49] total 1300172
[2025-11-26 22:58:49] -rw-r--r--. 2 boincer umatlas 408626840 Nov 26 11:13 ATLAS.root_0
[2025-11-26 22:58:49] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 11:13 input.tar.gz
[2025-11-26 22:58:49] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 11:13 start_atlas.sh
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas 914491291 Nov 26 22:55 HITS.pool.root.1
[2025-11-26 22:58:49] -rw-------. 1 boincer umatlas   7639040 Nov 26 22:58 result.tar.gz
22:58:50 (2225874): run_atlas exited; CPU time 243575.042178
22:58:50 (2225874): called boinc_finish(0)

</stderr_txt>
]]>

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