Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:46 (128956): wrapper (7.7.26015): starting
00:01:46 (128956): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:46] Arguments: --nthreads 9
[2025-11-26 00:01:46] Threads: 9
[2025-11-26 00:01:46] Checking for CVMFS
[2025-11-26 00:01:46] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:47] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:47] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:48] 2.13.3.0 12130 27907 345864 153309 2 106 37712291 40960001 17220 16776704 0 92435890 99.651 81799207 36226 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:48] CVMFS is ok
[2025-11-26 00:01:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:48] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:48] Checking for apptainer binary...
[2025-11-26 00:01:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:48] Running /usr/bin/apptainer --version
[2025-11-26 00:01:48] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:49] c6-5-7-4.aglt2.org
[2025-11-26 00:01:49] apptainer works
[2025-11-26 00:01:49] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:49] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:49] Starting ATLAS job with PandaID=6896713872
[2025-11-26 00:01:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 00:39:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 00:39:07] 2025-11-27 05:38:03,533 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:39:07] 2025-11-27 05:38:04,643 | INFO     | time since job start (88488s) is within the limit (172800.0s)
[2025-11-27 00:39:07] 2025-11-27 05:38:06,038 | INFO     | monitor loop #5251: job 0:6896713872 is in state 'finished'
[2025-11-27 00:39:07] 2025-11-27 05:38:06,038 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:39:07] 2025-11-27 05:38:06,653 | INFO     | time since job start (88490s) is within the limit (172800.0s)
[2025-11-27 00:39:07] 2025-11-27 05:38:06,653 | INFO     | 88499s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-27 00:39:07] 2025-11-27 05:38:08,553 | INFO     | monitor loop #5252: job 0:6896713872 is in state 'finished'
[2025-11-27 00:39:07] 2025-11-27 05:38:08,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:39:07] 2025-11-27 05:38:08,661 | INFO     | time since job start (88492s) is within the limit (172800.0s)
[2025-11-27 00:39:07] 2025-11-27 05:38:10,668 | INFO     | time since job start (88494s) is within the limit (172800.0s)
[2025-11-27 00:39:07] 2025-11-27 05:38:11,058 | INFO     | monitor loop #5253: job 0:6896713872 is in state 'finished'
[2025-11-27 00:39:07] 2025-11-27 05:38:11,058 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:39:07] 2025-11-27 05:38:12,815 | INFO     | PID=138982 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 00:39:07] 2025-11-27 05:38:12,815 | INFO     | .. there are 26 such processes running
[2025-11-27 00:39:07] 2025-11-27 05:38:13,566 | INFO     | monitor loop #5254: job 0:6896713872 is in state 'finished'
[2025-11-27 00:39:07] 2025-11-27 05:38:13,566 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 00:39:07] 2025-11-27 05:38:13,816 | INFO     | time since job start (88497s) is within the limit (172800.0s)
[2025-11-27 00:39:07] 2025-11-27 05:38:14,566 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 00:39:07] 2025-11-27 05:38:14,583 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2685.8497678571425
[2025-11-27 00:39:07] 2025-11-27 05:38:14,592 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896713872/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 00:39:07] 2025-11-27 05:38:14,593 | INFO     | extracted standard info from prmon json
[2025-11-27 00:39:07] 2025-11-27 05:38:14,595 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 00:39:07] 2025-11-27 05:38:14,595 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 00:39:07] 2025-11-27 05:38:14,623 | INFO     | fitting pss+swap vs Time
[2025-11-27 00:39:07] 2025-11-27 05:38:14,628 | INFO     | sum of square deviations: 939587116325.8362
[2025-11-27 00:39:07] 2025-11-27 05:38:14,684 | INFO     | sum of deviations: 7076338566254.913
[2025-11-27 00:39:07] 2025-11-27 05:38:14,685 | INFO     | mean x: 1764177693.4360747
[2025-11-27 00:39:07] 2025-11-27 05:38:14,685 | INFO     | mean y: 3002054.653075328
[2025-11-27 00:39:07] 2025-11-27 05:38:14,685 | INFO     | intersect: -13283598445.580984
[2025-11-27 00:39:07] 2025-11-27 05:38:14,688 | INFO     | chi2: 21.940300888308975
[2025-11-27 00:39:07] 2025-11-27 05:38:14,690 | INFO     | sum of square deviations: 929883771357.5046
[2025-11-27 00:39:07] 2025-11-27 05:38:14,751 | INFO     | sum of deviations: 7622666544174.05
[2025-11-27 00:39:07] 2025-11-27 05:38:14,752 | INFO     | mean x: 1764177540.9507627
[2025-11-27 00:39:07] 2025-11-27 05:38:14,752 | INFO     | mean y: 3010638.3529819697
[2025-11-27 00:39:07] 2025-11-27 05:38:14,752 | INFO     | intersect: -14458729133.44317
[2025-11-27 00:39:07] 2025-11-27 05:38:14,754 | INFO     | chi2: 18.220767425247953
[2025-11-27 00:39:07] 2025-11-27 05:38:14,754 | INFO     | current chi2=18.220767425247953 (change=16.952973808317275 %)
[2025-11-27 00:39:07] 2025-11-27 05:38:14,754 | INFO     | right removable region: 1441
[2025-11-27 00:39:07] 2025-11-27 05:38:14,757 | INFO     | sum of square deviations: 929880032057.5048
[2025-11-27 00:39:07] 2025-11-27 05:38:14,822 | INFO     | sum of deviations: 6456227225197.516
[2025-11-27 00:39:07] 2025-11-27 05:38:14,822 | INFO     | mean x: 1764177845.9507627
[2025-11-27 00:39:07] 2025-11-27 05:38:14,822 | INFO     | mean y: 3011796.6692094314
[2025-11-27 00:39:07] 2025-11-27 05:38:14,822 | INFO     | intersect: -12245808101.006859
[2025-11-27 00:39:07] 2025-11-27 05:38:14,824 | INFO     | chi2: 17.565134378231964
[2025-11-27 00:39:07] 2025-11-27 05:38:14,825 | INFO     | current chi2=17.565134378231964 (change=19.941232950038284 %)
[2025-11-27 00:39:07] 2025-11-27 05:38:14,825 | INFO     | left removable region: 10
[2025-11-27 00:39:07] 2025-11-27 05:38:14,831 | INFO     | sum of square deviations: 908764539003.3633
[2025-11-27 00:39:07] 2025-11-27 05:38:14,925 | INFO     | sum of deviations: 6555632127490.079
[2025-11-27 00:39:07] 2025-11-27 05:38:14,925 | INFO     | mean x: 1764177815.483578
[2025-11-27 00:39:07] 2025-11-27 05:38:14,926 | INFO     | mean y: 3030722.5562543673
[2025-11-27 00:39:07] 2025-11-27 05:38:14,926 | INFO     | intersect: -12723368987.618404
[2025-11-27 00:39:07] 2025-11-27 05:38:14,932 | INFO     | chi2: 9.921560350189013
[2025-11-27 00:39:07] 2025-11-27 05:38:14,932 | INFO     | current memory leak: 7.21 B/s (using 1431 data points, chi2=9.92)
[2025-11-27 00:39:07] 2025-11-27 05:38:14,934 | INFO     | could have reported an average CPU frequency of 2916 MHz (52 samples)
[2025-11-27 00:39:07] 2025-11-27 05:38:14,935 | INFO     | ..............................
[2025-11-27 00:39:07] 2025-11-27 05:38:14,935 | INFO     | . Timing measurements:
[2025-11-27 00:39:07] 2025-11-27 05:38:14,935 | INFO     | . get job = 0 s
[2025-11-27 00:39:07] 2025-11-27 05:38:14,935 | INFO     | . initial setup = 9 s
[2025-11-27 00:39:07] 2025-11-27 05:38:14,935 | INFO     | . payload setup = 63 s
[2025-11-27 00:39:07] 2025-11-27 05:38:14,935 | INFO     | . stage-in = 0 s
[2025-11-27 00:39:07] 2025-11-27 05:38:14,940 | INFO     | . payload execution = 88300 s
[2025-11-27 00:39:07] 2025-11-27 05:38:14,940 | INFO     | . stage-out = 7 s
[2025-11-27 00:39:07] 2025-11-27 05:38:14,940 | INFO     | . log creation = 2 s
[2025-11-27 00:39:07] 2025-11-27 05:38:14,940 | INFO     | ..............................
[2025-11-27 00:39:07] 2025-11-27 05:38:15,439 | INFO     | 
[2025-11-27 00:39:07] 2025-11-27 05:38:15,440 | INFO     | job summary report
[2025-11-27 00:39:07] 2025-11-27 05:38:15,440 | INFO     | --------------------------------------------------
[2025-11-27 00:39:07] 2025-11-27 05:38:15,440 | INFO     | PanDA job id: 6896713872
[2025-11-27 00:39:07] 2025-11-27 05:38:15,440 | INFO     | task id: 47556161
[2025-11-27 00:39:07] 2025-11-27 05:38:15,440 | INFO     | errors: (none)
[2025-11-27 00:39:07] 2025-11-27 05:38:15,440 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 00:39:07] 2025-11-27 05:38:15,440 | INFO     | pilot state: finished 
[2025-11-27 00:39:07] 2025-11-27 05:38:15,440 | INFO     | transexitcode: 0
[2025-11-27 00:39:07] 2025-11-27 05:38:15,440 | INFO     | exeerrorcode: 0
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | exeerrordiag: 
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | exitcode: 0
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | exitmsg: OK
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | cpuconsumptiontime: 243020 s
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | nevents: 1000
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | neventsw: 0
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | pid: 171015
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | pgrp: 171015
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | corecount: 9
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | event service: False
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | sizes: {0: 2284042, 1: 2284241, 2: 2284241, 13: 2284269, 24: 2284325, 35: 2284353, 42: 2284771, 46: 2284827, 88368: 2350298, 88369: 2350297, 88377: 2359683, 88410:
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | --------------------------------------------------
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | 
[2025-11-27 00:39:07] 2025-11-27 05:38:15,441 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 00:39:07] 2025-11-27 05:38:15,698 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,699 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,700 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,700 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,700 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,700 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,700 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 00:39:07] 2025-11-27 05:38:15,700 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,700 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 00:39:07] 2025-11-27 05:38:15,700 | INFO     | job 6896713872 has completed (purged errors)
[2025-11-27 00:39:07] 2025-11-27 05:38:15,700 | INFO     | overall cleanup function is called
[2025-11-27 00:39:07] 2025-11-27 05:38:16,843 | INFO     | --- collectZombieJob: --- 10, [171015]
[2025-11-27 00:39:07] 2025-11-27 05:38:16,843 | INFO     | zombie collector waiting for pid 171015
[2025-11-27 00:39:07] 2025-11-27 05:38:16,843 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 00:39:07] 2025-11-27 05:38:16,843 | INFO     | collected zombie processes
[2025-11-27 00:39:07] 2025-11-27 05:38:16,843 | INFO     | will attempt to kill all subprocesses of pid=171015
[2025-11-27 00:39:07] 2025-11-27 05:38:18,503 | INFO     | process IDs to be killed: [171015] (in reverse order)
[2025-11-27 00:39:07] 2025-11-27 05:38:18,728 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 00:39:07] 2025-11-27 05:38:18,730 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 00:39:07] 2025-11-27 05:38:18,755 | INFO     | did not find any defunct processes belonging to 171015
[2025-11-27 00:39:07] 2025-11-27 05:38:18,784 | INFO     | did not find any defunct processes belonging to 171015
[2025-11-27 00:39:07] 2025-11-27 05:38:18,786 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 00:39:07] 2025-11-27 05:38:18,787 | INFO     | ready for new job
[2025-11-27 00:39:07] 2025-11-27 05:38:18,787 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 00:39:07] 2025-11-27 05:38:18,797 | INFO     | ***************************************
[2025-11-27 00:39:07] 2025-11-27 05:38:18,797 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 00:39:07] 2025-11-27 05:38:18,797 | INFO     | ***************************************
[2025-11-27 00:39:07] 2025-11-27 05:38:18,797 | INFO     | 
[2025-11-27 00:39:07] 2025-11-27 05:38:18,802 | INFO     | architecture information:
[2025-11-27 00:39:07] 2025-11-27 05:38:18,803 | INFO     | executing command: cat /etc/os-release
[2025-11-27 00:39:07] 2025-11-27 05:38:18,996 | INFO     | cat /etc/os-release:
[2025-11-27 00:39:07] NAME="CentOS Linux"
[2025-11-27 00:39:07] VERSION="7 (Core)"
[2025-11-27 00:39:07] ID="centos"
[2025-11-27 00:39:07] ID_LIKE="rhel fedora"
[2025-11-27 00:39:07] VERSION_ID="7"
[2025-11-27 00:39:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 00:39:07] ANSI_COLOR="0;31"
[2025-11-27 00:39:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 00:39:07] HOME_URL="https://www.centos.org/"
[2025-11-27 00:39:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 00:39:07] 
[2025-11-27 00:39:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 00:39:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 00:39:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 00:39:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 00:39:07] 
[2025-11-27 00:39:07] 2025-11-27 05:38:18,996 | INFO     | ***************************************
[2025-11-27 00:39:07] 2025-11-27 05:38:19,502 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 00:39:07] 2025-11-27 05:38:19,575 | INFO     | sufficient remaining disk space (69001543680 B)
[2025-11-27 00:39:07] 2025-11-27 05:38:19,575 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 00:39:07] 2025-11-27 05:38:19,576 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 00:39:07] 2025-11-27 05:38:19,576 | INFO     | update_server=False
[2025-11-27 00:39:07] 2025-11-27 05:38:19,576 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 00:39:07] 2025-11-27 05:38:19,604 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:39:07] 2025-11-27 05:38:19,604 | INFO     | aborting loop
[2025-11-27 00:39:07] 2025-11-27 05:38:19,729 | INFO     | all data control threads have been joined
[2025-11-27 00:39:07] 2025-11-27 05:38:19,776 | INFO     | all job control threads have been joined
[2025-11-27 00:39:07] 2025-11-27 05:38:20,106 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 00:39:07] 2025-11-27 05:38:20,180 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 00:39:07] 2025-11-27 05:38:20,238 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 00:39:07] 2025-11-27 05:38:20,582 | INFO     | [job] retrieve thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:20,607 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:20,610 | INFO     | [job] job monitor thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:20,699 | INFO     | [payload] validate_post thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:20,737 | INFO     | [data] control thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:20,788 | INFO     | [job] control thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:21,090 | INFO     | all payload control threads have been joined
[2025-11-27 00:39:07] 2025-11-27 05:38:21,190 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:21,244 | INFO     | [job] queue monitor thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:21,603 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:21,631 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:21,628 | INFO     | [data] copytool_in thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:21,820 | INFO     | [payload] failed_post thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:21,859 | INFO     | [job] validate thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:22,102 | INFO     | [payload] control thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:22,195 | INFO     | [data] copytool_out thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:24,162 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 00:39:07] 2025-11-27 05:38:50,638 | INFO     | PID=138982 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 00:39:07] 2025-11-27 05:38:50,639 | INFO     | .. there are 26 such processes running
[2025-11-27 00:39:07] 2025-11-27 05:38:50,663 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 00:39:07] 2025-11-27 05:38:50,663 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 00:39:07] 2025-11-27 05:38:50,663 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 00:39:07] 2025-11-27 05:38:58,457 | INFO     | [monitor] cgroup control has ended
[2025-11-27 00:39:07] 2025-11-27 05:38:58,577 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139982817810240)>', '<ExcThread(monitor, started 139982102587136)>']
[2025-11-27 00:39:07] 2025-11-27 05:38:58,722 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 00:39:07] 2025-11-27 05:38:58,722 | INFO     | [monitor] control thread has ended
[2025-11-27 00:39:07] 2025-11-27 05:39:03,603 | INFO     | all workflow threads have been joined
[2025-11-27 00:39:07] 2025-11-27 05:39:03,603 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 00:39:07] 2025-11-27 05:39:03,603 | INFO     | traces error code: 0
[2025-11-27 00:39:07] 2025-11-27 05:39:03,604 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 00:39:07] 2025-11-27 05:39:06,958 [wrapper] ==== pilot stdout END ====
[2025-11-27 00:39:07] 2025-11-27 05:39:06,990 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 00:39:07] 2025-11-27 05:39:07,012 [wrapper] pilotpid: 138982
[2025-11-27 00:39:07] 2025-11-27 05:39:07,056 [wrapper] Pilot exit status: 0
[2025-11-27 00:39:07] 2025-11-27 05:39:07,179 [wrapper] pandaids: 6896713872
[2025-11-27 00:39:07] 2025-11-27 05:39:07,382 [wrapper] cleanup supervisor_pilot  282072 138983
[2025-11-27 00:39:07] 2025-11-27 05:39:07,409 [wrapper] Test setup, not cleaning
[2025-11-27 00:39:07] 2025-11-27 05:39:07,447 [wrapper] apfmon messages muted
[2025-11-27 00:39:07] 2025-11-27 05:39:07,479 [wrapper] ==== wrapper stdout END ====
[2025-11-27 00:39:07] 2025-11-27 05:39:07,502 [wrapper] ==== wrapper stderr END ====
[2025-11-27 00:39:07]  *** Error codes and diagnostics ***
[2025-11-27 00:39:07]     "exeErrorCode": 0,
[2025-11-27 00:39:07]     "exeErrorDiag": "",
[2025-11-27 00:39:07]     "pilotErrorCode": 0,
[2025-11-27 00:39:07]     "pilotErrorDiag": "",
[2025-11-27 00:39:07]  *** Listing of results directory ***
[2025-11-27 00:39:07] total 1329124
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-27 00:39:07] -rwx------. 1 boincer umatlas     36292 Nov 25 01:21 runpilot2-wrapper.sh
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:21 queuedata.json
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 00:39:07] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-27 00:39:07] -rw-r--r--. 2 boincer umatlas 408816330 Nov 26 00:01 EVNT.47483658._002118.pool.root.1
[2025-11-27 00:39:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 00:39:07] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-27 00:39:07] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:01 input.tar.gz
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:01 pandaJob.out
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-27 00:39:07] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas       533 Nov 27 00:17 boinc_task_state.xml
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas 920899965 Nov 27 00:35 HITS.47556161._001014.pool.root.1
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas      6841 Nov 27 00:36 init_data.xml
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas      1058 Nov 27 00:37 memory_monitor_summary.json
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas   1516240 Nov 27 00:37 agis_ddmendpoints.agis.ALL.json
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas   2591025 Nov 27 00:37 log.47556161._001014.job.log.tgz.1
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas      8622 Nov 27 00:38 heartbeat.json
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas        95 Nov 27 00:38 pilot_heartbeat.json
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 00:39 boinc_mmap_file
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas      4823 Nov 27 00:39 pilotlog.txt
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas        29 Nov 27 00:39 wrapper_checkpoint.txt
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas  11096554 Nov 27 00:39 log.47556161._001014.job.log.1
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas       353 Nov 27 00:39 output.list
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas       620 Nov 27 00:39 runtime_log
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas  13711360 Nov 27 00:39 result.tar.gz
[2025-11-27 00:39:07] -rw-------. 1 boincer umatlas       660 Nov 27 00:39 UQJODmab1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmMCMKDm7WK0Jn.diag
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas      9343 Nov 27 00:39 runtime_log.err
[2025-11-27 00:39:07] -rw-r--r--. 1 boincer umatlas     21904 Nov 27 00:39 stderr.txt
[2025-11-27 00:39:08] HITS file was successfully produced:
[2025-11-27 00:39:08] -rw-------. 1 boincer umatlas 920899965 Nov 27 00:35 shared/HITS.pool.root.1
[2025-11-27 00:39:08]  *** Contents of shared directory: ***
[2025-11-27 00:39:08] total 1312552
[2025-11-27 00:39:08] -rw-r--r--. 2 boincer umatlas 408816330 Nov 26 00:01 ATLAS.root_0
[2025-11-27 00:39:08] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 00:39:08] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:01 input.tar.gz
[2025-11-27 00:39:08] -rw-------. 1 boincer umatlas 920899965 Nov 27 00:35 HITS.pool.root.1
[2025-11-27 00:39:08] -rw-------. 1 boincer umatlas  13711360 Nov 27 00:39 result.tar.gz
00:39:09 (128956): run_atlas exited; CPU time 244575.646162
00:39:09 (128956): called boinc_finish(0)

</stderr_txt>
]]>

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