Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:38 (2212033): wrapper (7.7.26015): starting
00:02:38 (2212033): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:02:38] Arguments: --nthreads 9
[2025-11-26 00:02:38] Threads: 9
[2025-11-26 00:02:38] Checking for CVMFS
[2025-11-26 00:02:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:02:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:02:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:02:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:02:41] 2.13.3.0 13172 29605 380996 153309 3 176 23871876 32935936 39176 16776704 0 153658157 99.538 169366919 34968 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:02:41] CVMFS is ok
[2025-11-26 00:02:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:02:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:02:41] Further information can be found at the LHC@home message board.
[2025-11-26 00:02:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:02:41] Checking for apptainer binary...
[2025-11-26 00:02:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:02:41] Running /usr/bin/apptainer --version
[2025-11-26 00:02:41] apptainer version 1.4.4-1.el9
[2025-11-26 00:02:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:02:41] c6-6-8-3.aglt2.org
[2025-11-26 00:02:41] apptainer works
[2025-11-26 00:02:41] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:02:41] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:02:41] Starting ATLAS job with PandaID=6891561645
[2025-11-26 00:02:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:20:03 (2212033): BOINC client no longer exists - exiting
13:20:03 (2212033): timer handler: client dead, exiting
13:20:45 (1728672): wrapper (7.7.26015): starting
13:20:45 (1728672): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 13:20:45] Arguments: --nthreads 8
[2025-11-26 13:20:45] Threads: 8
[2025-11-26 13:20:45] This job has been restarted, cleaning up previous attempt
[2025-11-26 13:20:45] Checking for CVMFS
[2025-11-26 13:20:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 13:20:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 13:20:45] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 13:20:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 13:20:46] 2.13.3.0 13172 30403 374404 153331 3 439 24192179 32935937 35383 16776704 0 159168482 99.541 174462204 34908 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 13:20:46] CVMFS is ok
[2025-11-26 13:20:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 13:20:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 13:20:46] Further information can be found at the LHC@home message board.
[2025-11-26 13:20:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 13:20:46] Checking for apptainer binary...
[2025-11-26 13:20:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 13:20:46] Running /usr/bin/apptainer --version
[2025-11-26 13:20:46] apptainer version 1.4.4-1.el9
[2025-11-26 13:20:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 13:20:46] c6-6-8-3.aglt2.org
[2025-11-26 13:20:46] apptainer works
[2025-11-26 13:20:46] Set ATHENA_PROC_NUMBER=8
[2025-11-26 13:20:46] Set ATHENA_CORE_NUMBER=8
[2025-11-26 13:20:46] Starting ATLAS job with PandaID=6891561645
[2025-11-26 13:20:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:42:27]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:42:27] 2025-11-27 15:41:16,104 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 10:42:27] 2025-11-27 15:41:16,118 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2630.3684687499995
[2025-11-27 10:42:27] 2025-11-27 15:41:16,153 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6891561645/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:42:27] 2025-11-27 15:41:16,153 | INFO     | extracted standard info from prmon json
[2025-11-27 10:42:27] 2025-11-27 15:41:16,154 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:42:27] 2025-11-27 15:41:16,154 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:42:27] 2025-11-27 15:41:16,173 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:42:27] 2025-11-27 15:41:16,175 | INFO     | sum of square deviations: 618817000702.7002
[2025-11-27 10:42:27] 2025-11-27 15:41:16,203 | INFO     | sum of deviations: 3046937389593.4014
[2025-11-27 10:42:27] 2025-11-27 15:41:16,204 | INFO     | mean x: 1764219662.6544876
[2025-11-27 10:42:27] 2025-11-27 15:41:16,204 | INFO     | mean y: 2949281.026211279
[2025-11-27 10:42:27] 2025-11-27 15:41:16,204 | INFO     | intersect: -8683733288.285366
[2025-11-27 10:42:27] 2025-11-27 15:41:16,206 | INFO     | chi2: 9.820054782465597
[2025-11-27 10:42:27] 2025-11-27 15:41:16,207 | INFO     | sum of square deviations: 611474885006.8335
[2025-11-27 10:42:27] 2025-11-27 15:41:16,236 | INFO     | sum of deviations: 3491400773613.0957
[2025-11-27 10:42:27] 2025-11-27 15:41:16,236 | INFO     | mean x: 1764219510.167464
[2025-11-27 10:42:27] 2025-11-27 15:41:16,236 | INFO     | mean y: 2958509.5661881976
[2025-11-27 10:42:27] 2025-11-27 15:41:16,236 | INFO     | intersect: -10070386305.819262
[2025-11-27 10:42:27] 2025-11-27 15:41:16,238 | INFO     | chi2: 6.443801733247603
[2025-11-27 10:42:27] 2025-11-27 15:41:16,238 | INFO     | current chi2=6.443801733247603 (change=34.381203812085985 %)
[2025-11-27 10:42:27] 2025-11-27 15:41:16,239 | INFO     | sum of square deviations: 604191248716.8126
[2025-11-27 10:42:27] 2025-11-27 15:41:16,268 | INFO     | sum of deviations: 3896529542026.955
[2025-11-27 10:42:27] 2025-11-27 15:41:16,268 | INFO     | mean x: 1764219357.6821458
[2025-11-27 10:42:27] 2025-11-27 15:41:16,268 | INFO     | mean y: 2966988.8991192956
[2025-11-27 10:42:27] 2025-11-27 15:41:16,268 | INFO     | intersect: -11374776168.460537
[2025-11-27 10:42:27] 2025-11-27 15:41:16,270 | INFO     | chi2: 3.5606646170172076
[2025-11-27 10:42:27] 2025-11-27 15:41:16,270 | INFO     | current chi2=3.5606646170172076 (change=44.742796808202336 %)
[2025-11-27 10:42:27] 2025-11-27 15:41:16,271 | INFO     | sum of square deviations: 596965020515.2281
[2025-11-27 10:42:27] 2025-11-27 15:41:16,299 | INFO     | sum of deviations: 4078252027944.8447
[2025-11-27 10:42:27] 2025-11-27 15:41:16,300 | INFO     | mean x: 1764219205.1897106
[2025-11-27 10:42:27] 2025-11-27 15:41:16,300 | INFO     | mean y: 2970821.691318328
[2025-11-27 10:42:27] 2025-11-27 15:41:16,300 | INFO     | intersect: -12049545329.245605
[2025-11-27 10:42:27] 2025-11-27 15:41:16,301 | INFO     | chi2: 2.828497990176352
[2025-11-27 10:42:27] 2025-11-27 15:41:16,301 | INFO     | current chi2=2.828497990176352 (change=20.56263943932457 %)
[2025-11-27 10:42:27] 2025-11-27 15:41:16,301 | INFO     | right removable region: 1243
[2025-11-27 10:42:27] 2025-11-27 15:41:16,303 | INFO     | sum of square deviations: 611472384858.8326
[2025-11-27 10:42:27] 2025-11-27 15:41:16,309 | INFO     | time since job start (76817s) is within the limit (172800.0s)
[2025-11-27 10:42:27] 2025-11-27 15:41:16,331 | INFO     | sum of deviations: 2684977098853.9565
[2025-11-27 10:42:27] 2025-11-27 15:41:16,332 | INFO     | mean x: 1764219815.167464
[2025-11-27 10:42:27] 2025-11-27 15:41:16,332 | INFO     | mean y: 2956790.3763955343
[2025-11-27 10:42:27] 2025-11-27 15:41:16,332 | INFO     | intersect: -7743737775.6628895
[2025-11-27 10:42:27] 2025-11-27 15:41:16,333 | INFO     | chi2: 7.58717844950726
[2025-11-27 10:42:27] 2025-11-27 15:41:16,334 | INFO     | current chi2=7.58717844950726 (change=22.737921349942937 %)
[2025-11-27 10:42:27] 2025-11-27 15:41:16,334 | INFO     | left removable region: 10
[2025-11-27 10:42:27] 2025-11-27 15:41:16,335 | INFO     | sum of square deviations: 581267398588.7909
[2025-11-27 10:42:27] 2025-11-27 15:41:16,363 | INFO     | sum of deviations: 3609462466172.818
[2025-11-27 10:42:27] 2025-11-27 15:41:16,363 | INFO     | mean x: 1764219479.7120843
[2025-11-27 10:42:27] 2025-11-27 15:41:16,363 | INFO     | mean y: 2981482.193836172
[2025-11-27 10:42:27] 2025-11-27 15:41:16,364 | INFO     | intersect: -10952189940.754953
[2025-11-27 10:42:27] 2025-11-27 15:41:16,365 | INFO     | chi2: 0.4082652395479335
[2025-11-27 10:42:27] 2025-11-27 15:41:16,365 | INFO     | current memory leak: 6.21 B/s (using 1233 data points, chi2=0.41)
[2025-11-27 10:42:27] 2025-11-27 15:41:16,367 | INFO     | could have reported an average CPU frequency of 2666 MHz (45 samples)
[2025-11-27 10:42:27] 2025-11-27 15:41:16,367 | INFO     | ..............................
[2025-11-27 10:42:27] 2025-11-27 15:41:16,367 | INFO     | . Timing measurements:
[2025-11-27 10:42:27] 2025-11-27 15:41:16,367 | INFO     | . get job = 0 s
[2025-11-27 10:42:27] 2025-11-27 15:41:16,367 | INFO     | . initial setup = 2 s
[2025-11-27 10:42:27] 2025-11-27 15:41:16,367 | INFO     | . payload setup = 7 s
[2025-11-27 10:42:27] 2025-11-27 15:41:16,367 | INFO     | . stage-in = 0 s
[2025-11-27 10:42:27] 2025-11-27 15:41:16,367 | INFO     | . payload execution = 76755 s
[2025-11-27 10:42:27] 2025-11-27 15:41:16,367 | INFO     | . stage-out = 6 s
[2025-11-27 10:42:27] 2025-11-27 15:41:16,367 | INFO     | . log creation = 1 s
[2025-11-27 10:42:27] 2025-11-27 15:41:16,367 | INFO     | ..............................
[2025-11-27 10:42:27] 2025-11-27 15:41:16,458 | INFO     | 
[2025-11-27 10:42:27] 2025-11-27 15:41:16,458 | INFO     | job summary report
[2025-11-27 10:42:27] 2025-11-27 15:41:16,458 | INFO     | --------------------------------------------------
[2025-11-27 10:42:27] 2025-11-27 15:41:16,458 | INFO     | PanDA job id: 6891561645
[2025-11-27 10:42:27] 2025-11-27 15:41:16,458 | INFO     | task id: 47493068
[2025-11-27 10:42:27] 2025-11-27 15:41:16,458 | INFO     | errors: (none)
[2025-11-27 10:42:27] 2025-11-27 15:41:16,458 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:42:27] 2025-11-27 15:41:16,458 | INFO     | pilot state: finished 
[2025-11-27 10:42:27] 2025-11-27 15:41:16,458 | INFO     | transexitcode: 0
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | exeerrorcode: 0
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | exeerrordiag: 
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | exitcode: 0
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | exitmsg: OK
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | cpuconsumptiontime: 263365 s
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | nevents: 1000
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | neventsw: 0
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | pid: 1791273
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | pgrp: 1791273
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | corecount: 8
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | event service: False
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | sizes: {0: 2284300, 5: 2284562, 11: 2284618, 76766: 2344044, 76767: 2344043, 76774: 2353093, 76775: 2353277, 76800: 2353523}
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | --------------------------------------------------
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | 
[2025-11-27 10:42:27] 2025-11-27 15:41:16,459 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 10:42:27] 2025-11-27 15:41:16,560 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,560 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,560 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,560 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:42:27] 2025-11-27 15:41:16,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,562 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:42:27] 2025-11-27 15:41:16,562 | INFO     | job 6891561645 has completed (purged errors)
[2025-11-27 10:42:27] 2025-11-27 15:41:16,562 | INFO     | overall cleanup function is called
[2025-11-27 10:42:27] 2025-11-27 15:41:17,607 | INFO     | --- collectZombieJob: --- 10, [1791273]
[2025-11-27 10:42:27] 2025-11-27 15:41:17,608 | INFO     | zombie collector waiting for pid 1791273
[2025-11-27 10:42:27] 2025-11-27 15:41:17,608 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:42:27] 2025-11-27 15:41:17,608 | INFO     | collected zombie processes
[2025-11-27 10:42:27] 2025-11-27 15:41:17,608 | INFO     | will attempt to kill all subprocesses of pid=1791273
[2025-11-27 10:42:27] 2025-11-27 15:41:19,166 | INFO     | process IDs to be killed: [1791273] (in reverse order)
[2025-11-27 10:42:27] 2025-11-27 15:41:19,771 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:42:27] 2025-11-27 15:41:19,772 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:42:27] 2025-11-27 15:41:19,863 | INFO     | did not find any defunct processes belonging to 1791273
[2025-11-27 10:42:27] 2025-11-27 15:41:19,969 | INFO     | did not find any defunct processes belonging to 1791273
[2025-11-27 10:42:27] 2025-11-27 15:41:19,970 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:42:27] 2025-11-27 15:41:19,971 | INFO     | ready for new job
[2025-11-27 10:42:27] 2025-11-27 15:41:19,971 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:42:27] 2025-11-27 15:41:19,976 | INFO     | ***************************************
[2025-11-27 10:42:27] 2025-11-27 15:41:19,977 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:42:27] 2025-11-27 15:41:19,977 | INFO     | ***************************************
[2025-11-27 10:42:27] 2025-11-27 15:41:19,977 | INFO     | 
[2025-11-27 10:42:27] 2025-11-27 15:41:19,983 | INFO     | architecture information:
[2025-11-27 10:42:27] 2025-11-27 15:41:19,983 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:42:27] 2025-11-27 15:41:20,077 | INFO     | cat /etc/os-release:
[2025-11-27 10:42:27] NAME="CentOS Linux"
[2025-11-27 10:42:27] VERSION="7 (Core)"
[2025-11-27 10:42:27] ID="centos"
[2025-11-27 10:42:27] ID_LIKE="rhel fedora"
[2025-11-27 10:42:27] VERSION_ID="7"
[2025-11-27 10:42:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:42:27] ANSI_COLOR="0;31"
[2025-11-27 10:42:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:42:27] HOME_URL="https://www.centos.org/"
[2025-11-27 10:42:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:42:27] 
[2025-11-27 10:42:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:42:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:42:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:42:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:42:27] 
[2025-11-27 10:42:27] 2025-11-27 15:41:20,078 | INFO     | ***************************************
[2025-11-27 10:42:27] 2025-11-27 15:41:20,581 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 10:42:27] 2025-11-27 15:41:20,657 | INFO     | sufficient remaining disk space (87697653760 B)
[2025-11-27 10:42:27] 2025-11-27 15:41:20,657 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:42:27] 2025-11-27 15:41:20,657 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:42:27] 2025-11-27 15:41:20,657 | INFO     | update_server=False
[2025-11-27 10:42:27] 2025-11-27 15:41:20,658 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:42:27] 2025-11-27 15:41:20,900 | INFO     | all data control threads have been joined
[2025-11-27 10:42:27] 2025-11-27 15:41:21,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:42:27] 2025-11-27 15:41:21,097 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 10:42:27] 2025-11-27 15:41:21,097 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 10:42:27] 2025-11-27 15:41:21,102 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:42:27] 2025-11-27 15:41:21,102 | INFO     | will abort loop
[2025-11-27 10:42:27] 2025-11-27 15:41:21,288 | INFO     | all payload control threads have been joined
[2025-11-27 10:42:27] 2025-11-27 15:41:21,472 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:42:27] 2025-11-27 15:41:21,663 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:21,906 | INFO     | [data] control thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:22,108 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:22,183 | INFO     | all job control threads have been joined
[2025-11-27 10:42:27] 2025-11-27 15:41:22,244 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:22,245 | INFO     | [job] validate thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:22,294 | INFO     | [payload] control thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:22,478 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:22,613 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:22,638 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:22,896 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:23,047 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:23,082 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:23,188 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:23,189 | INFO     | [job] control thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:23,194 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:23,752 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:42:27] 2025-11-27 15:41:27,761 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:42:27] 2025-11-27 15:41:52,643 | INFO     | PID=1750932 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:42:27] 2025-11-27 15:41:52,643 | INFO     | .. there are 53 such processes running
[2025-11-27 10:42:27] 2025-11-27 15:41:52,644 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:42:27] 2025-11-27 15:41:52,644 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:42:27] 2025-11-27 15:41:52,644 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:42:27] 2025-11-27 15:42:18,561 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:42:27] 2025-11-27 15:42:19,647 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140583195158336)>', '<ExcThread(monitor, started 140582693349120)>']
[2025-11-27 10:42:27] 2025-11-27 15:42:19,888 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:42:27] 2025-11-27 15:42:19,889 | INFO     | [monitor] control thread has ended
[2025-11-27 10:42:27] 2025-11-27 15:42:24,673 | INFO     | all workflow threads have been joined
[2025-11-27 10:42:27] 2025-11-27 15:42:24,674 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:42:27] 2025-11-27 15:42:24,674 | INFO     | traces error code: 0
[2025-11-27 10:42:27] 2025-11-27 15:42:24,674 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:42:27] 2025-11-27 15:42:25,465 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:42:27] 2025-11-27 15:42:25,487 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:42:27] 2025-11-27 15:42:25,515 [wrapper] pilotpid: 1750932
[2025-11-27 10:42:27] 2025-11-27 15:42:25,556 [wrapper] Pilot exit status: 0
[2025-11-27 10:42:27] 2025-11-27 15:42:25,654 [wrapper] pandaids: 6891561645 6891561645
[2025-11-27 10:42:27] 2025-11-27 15:42:26,800 [wrapper] cleanup supervisor_pilot 3715868 1750933
[2025-11-27 10:42:27] 2025-11-27 15:42:26,815 [wrapper] Test setup, not cleaning
[2025-11-27 10:42:27] 2025-11-27 15:42:26,836 [wrapper] apfmon messages muted
[2025-11-27 10:42:27] 2025-11-27 15:42:26,862 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:42:27] 2025-11-27 15:42:26,891 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:42:27]  *** Error codes and diagnostics ***
[2025-11-27 10:42:27]     "exeErrorCode": 0,
[2025-11-27 10:42:27]     "exeErrorDiag": "",
[2025-11-27 10:42:27]     "pilotErrorCode": 0,
[2025-11-27 10:42:27]     "pilotErrorDiag": "",
[2025-11-27 10:42:27]  *** Listing of results directory ***
[2025-11-27 10:42:27] total 1729812
[2025-11-27 10:42:27] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-27 10:42:27] -rwx------. 1 boincer umatlas     36292 Nov 18 10:27 runpilot2-wrapper.sh
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:27 queuedata.json
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:42:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:02 run_atlas
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:02 job.xml
[2025-11-27 10:42:27] -rw-r--r--. 3 boincer umatlas 410091759 Nov 26 00:02 EVNT.47493065._000092.pool.root.1
[2025-11-27 10:42:27] -rw-r--r--. 3 boincer umatlas 410091759 Nov 26 00:02 ATLAS.root_0
[2025-11-27 10:42:27] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:02 start_atlas.sh
[2025-11-27 10:42:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:02 shared
[2025-11-27 10:42:27] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 00:02 input.tar.gz
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:02 boinc_lockfile
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas      2771 Nov 26 13:20 pandaJob.out
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas    991522 Nov 26 13:20 agis_schedconf.cvmfs.json
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas       533 Nov 27 10:23 boinc_task_state.xml
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas      6880 Nov 27 10:37 init_data.xml
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas 924352890 Nov 27 10:38 HITS.47493068._000915.pool.root.1
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas      1065 Nov 27 10:40 memory_monitor_summary.json
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:40 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas   2294708 Nov 27 10:40 log.47493068._000915.job.log.tgz.1
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas      8639 Nov 27 10:41 heartbeat.json
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas        95 Nov 27 10:41 pilot_heartbeat.json
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:42 boinc_mmap_file
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas        29 Nov 27 10:42 wrapper_checkpoint.txt
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas      5010 Nov 27 10:42 pilotlog.txt
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas   9137506 Nov 27 10:42 log.47493068._000915.job.log.1
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas       353 Nov 27 10:42 output.list
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:42 runtime_log
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas  11448320 Nov 27 10:42 result.tar.gz
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas       786 Nov 27 10:42 xXqNDmRncf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmjPFKDm0all6n.diag
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas      8789 Nov 27 10:42 runtime_log.err
[2025-11-27 10:42:27] -rw-r--r--. 1 boincer umatlas     23602 Nov 27 10:42 stderr.txt
[2025-11-27 10:42:27] HITS file was successfully produced:
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas 924352890 Nov 27 10:38 shared/HITS.pool.root.1
[2025-11-27 10:42:27]  *** Contents of shared directory: ***
[2025-11-27 10:42:27] total 1314960
[2025-11-27 10:42:27] -rw-r--r--. 3 boincer umatlas 410091759 Nov 26 00:02 ATLAS.root_0
[2025-11-27 10:42:27] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:02 start_atlas.sh
[2025-11-27 10:42:27] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 00:02 input.tar.gz
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas 924352890 Nov 27 10:38 HITS.pool.root.1
[2025-11-27 10:42:27] -rw-------. 1 boincer umatlas  11448320 Nov 27 10:42 result.tar.gz
10:42:28 (1728672): run_atlas exited; CPU time 266519.611354
10:42:28 (1728672): called boinc_finish(0)

</stderr_txt>
]]>

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