Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:48 (341474): wrapper (7.7.26015): starting
00:00:48 (341474): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:00:48] Arguments: --nthreads 9
[2025-11-26 00:00:48] Threads: 9
[2025-11-26 00:00:48] Checking for CVMFS
[2025-11-26 00:00:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:00:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:00:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:00:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:00:49] 2.13.2.0 6914 35392 270812 153309 2 546 28468168 40960001 25334 16776704 0 133771719 99.627 129059566 36844 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:00:49] CVMFS is ok
[2025-11-26 00:00:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:00:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:00:49] Further information can be found at the LHC@home message board.
[2025-11-26 00:00:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:00:49] Checking for apptainer binary...
[2025-11-26 00:00:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:00:49] Running /usr/bin/apptainer --version
[2025-11-26 00:00:49] apptainer version 1.4.4-1.el9
[2025-11-26 00:00:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:00:49] c-212-1.aglt2.org
[2025-11-26 00:00:49] apptainer works
[2025-11-26 00:00:50] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:00:50] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:00:50] Starting ATLAS job with PandaID=6896714110
[2025-11-26 00:00:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:45:28 (1477567): wrapper (7.7.26015): starting
23:45:28 (1477567): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 23:45:28] Arguments: --nthreads 9
[2025-11-26 23:45:28] Threads: 9
[2025-11-26 23:45:28] This job has been restarted, cleaning up previous attempt
[2025-11-26 23:45:28] Checking for CVMFS
[2025-11-26 23:45:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:45:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:45:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:45:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:45:29] 2.13.2.0 6914 36817 264160 153347 0 310 35259091 40960001 24511 16776704 0 142726935 99.622 142391741 37167 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 23:45:29] CVMFS is ok
[2025-11-26 23:45:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:45:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:45:29] Further information can be found at the LHC@home message board.
[2025-11-26 23:45:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:45:29] Checking for apptainer binary...
[2025-11-26 23:45:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:45:29] Running /usr/bin/apptainer --version
[2025-11-26 23:45:29] apptainer version 1.4.4-1.el9
[2025-11-26 23:45:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:45:29] c-212-1.aglt2.org
[2025-11-26 23:45:29] apptainer works
[2025-11-26 23:45:29] Set ATHENA_PROC_NUMBER=9
[2025-11-26 23:45:29] Set ATHENA_CORE_NUMBER=9
[2025-11-26 23:45:29] Starting ATLAS job with PandaID=6896714110
[2025-11-26 23:45:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 18:06:54]  *** The last 200 lines of the pilot log: ***
[2025-11-27 18:06:54] 2025-11-27 23:06:17,865 | INFO     | monitor loop #3745: job 0:6896714110 is in state 'finished'
[2025-11-27 18:06:54] 2025-11-27 23:06:17,865 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,053 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 18:06:54] 2025-11-27 23:06:19,059 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3095.808104166666
[2025-11-27 18:06:54] 2025-11-27 23:06:19,074 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896714110/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,075 | INFO     | extracted standard info from prmon json
[2025-11-27 18:06:54] 2025-11-27 23:06:19,075 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 18:06:54] 2025-11-27 23:06:19,075 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 18:06:54] 2025-11-27 23:06:19,090 | INFO     | fitting pss+swap vs Time
[2025-11-27 18:06:54] 2025-11-27 23:06:19,092 | INFO     | sum of square deviations: 392684389219.9409
[2025-11-27 18:06:54] 2025-11-27 23:06:19,175 | INFO     | sum of deviations: 3472105490197.587
[2025-11-27 18:06:54] 2025-11-27 23:06:19,175 | INFO     | mean x: 1764251769.0073936
[2025-11-27 18:06:54] 2025-11-27 23:06:19,175 | INFO     | mean y: 3038808.926987061
[2025-11-27 18:06:54] 2025-11-27 23:06:19,175 | INFO     | intersect: -15596430947.000628
[2025-11-27 18:06:54] 2025-11-27 23:06:19,177 | INFO     | chi2: 6.489323605870761
[2025-11-27 18:06:54] 2025-11-27 23:06:19,178 | INFO     | sum of square deviations: 387265672650.3856
[2025-11-27 18:06:54] 2025-11-27 23:06:19,200 | INFO     | sum of deviations: 3856025777582.6343
[2025-11-27 18:06:54] 2025-11-27 23:06:19,201 | INFO     | mean x: 1764251616.5283194
[2025-11-27 18:06:54] 2025-11-27 23:06:19,201 | INFO     | mean y: 3049609.635097493
[2025-11-27 18:06:54] 2025-11-27 23:06:19,201 | INFO     | intersect: -17563701568.997307
[2025-11-27 18:06:54] 2025-11-27 23:06:19,202 | INFO     | chi2: 3.275123408164672
[2025-11-27 18:06:54] 2025-11-27 23:06:19,202 | INFO     | current chi2=3.275123408164672 (change=49.530588901411335 %)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,203 | INFO     | sum of square deviations: 381897050042.37915
[2025-11-27 18:06:54] 2025-11-27 23:06:19,225 | INFO     | sum of deviations: 4002290301973.979
[2025-11-27 18:06:54] 2025-11-27 23:06:19,226 | INFO     | mean x: 1764251464.0494404
[2025-11-27 18:06:54] 2025-11-27 23:06:19,226 | INFO     | mean y: 3053761.1324626864
[2025-11-27 18:06:54] 2025-11-27 23:06:19,226 | INFO     | intersect: -18486344164.368416
[2025-11-27 18:06:54] 2025-11-27 23:06:19,227 | INFO     | chi2: 2.5950079481711743
[2025-11-27 18:06:54] 2025-11-27 23:06:19,227 | INFO     | current chi2=2.5950079481711743 (change=20.76610176880705 %)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,227 | INFO     | right removable region: 1071
[2025-11-27 18:06:54] 2025-11-27 23:06:19,228 | INFO     | sum of square deviations: 387262894972.5476
[2025-11-27 18:06:54] 2025-11-27 23:06:19,256 | INFO     | sum of deviations: 3144788138804.72
[2025-11-27 18:06:54] 2025-11-27 23:06:19,257 | INFO     | mean x: 1764251921.525534
[2025-11-27 18:06:54] 2025-11-27 23:06:19,257 | INFO     | mean y: 3048007.919220056
[2025-11-27 18:06:54] 2025-11-27 23:06:19,257 | INFO     | intersect: -14323649924.42526
[2025-11-27 18:06:54] 2025-11-27 23:06:19,258 | INFO     | chi2: 4.220595120709361
[2025-11-27 18:06:54] 2025-11-27 23:06:19,258 | INFO     | current chi2=4.220595120709361 (change=34.960939274301666 %)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,259 | INFO     | sum of square deviations: 381891692416.1941
[2025-11-27 18:06:54] 2025-11-27 23:06:19,282 | INFO     | sum of deviations: 3039828589833.8574
[2025-11-27 18:06:54] 2025-11-27 23:06:19,282 | INFO     | mean x: 1764252074.0410447
[2025-11-27 18:06:54] 2025-11-27 23:06:19,282 | INFO     | mean y: 3050987.844216418
[2025-11-27 18:06:54] 2025-11-27 23:06:19,282 | INFO     | intersect: -14040260246.323465
[2025-11-27 18:06:54] 2025-11-27 23:06:19,283 | INFO     | chi2: 4.139128932345891
[2025-11-27 18:06:54] 2025-11-27 23:06:19,283 | INFO     | current chi2=4.139128932345891 (change=1.9302061921016078 %)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,283 | INFO     | left removable region: 20
[2025-11-27 18:06:54] 2025-11-27 23:06:19,284 | INFO     | sum of square deviations: 359880661089.61383
[2025-11-27 18:06:54] 2025-11-27 23:06:19,305 | INFO     | sum of deviations: 3426242138852.703
[2025-11-27 18:06:54] 2025-11-27 23:06:19,305 | INFO     | mean x: 1764252043.6117983
[2025-11-27 18:06:54] 2025-11-27 23:06:19,305 | INFO     | mean y: 3071373.330161751
[2025-11-27 18:06:54] 2025-11-27 23:06:19,305 | INFO     | intersect: -16793481898.184855
[2025-11-27 18:06:54] 2025-11-27 23:06:19,306 | INFO     | chi2: 0.11679910308396833
[2025-11-27 18:06:54] 2025-11-27 23:06:19,307 | INFO     | current memory leak: 9.52 B/s (using 1051 data points, chi2=0.12)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,308 | INFO     | could have reported an average CPU frequency of 3054 MHz (40 samples)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,308 | INFO     | ..............................
[2025-11-27 18:06:54] 2025-11-27 23:06:19,308 | INFO     | . Timing measurements:
[2025-11-27 18:06:54] 2025-11-27 23:06:19,308 | INFO     | . get job = 0 s
[2025-11-27 18:06:54] 2025-11-27 23:06:19,308 | INFO     | . initial setup = 2 s
[2025-11-27 18:06:54] 2025-11-27 23:06:19,308 | INFO     | . payload setup = 12 s
[2025-11-27 18:06:54] 2025-11-27 23:06:19,308 | INFO     | . stage-in = 0 s
[2025-11-27 18:06:54] 2025-11-27 23:06:19,308 | INFO     | . payload execution = 65977 s
[2025-11-27 18:06:54] 2025-11-27 23:06:19,308 | INFO     | . stage-out = 4 s
[2025-11-27 18:06:54] 2025-11-27 23:06:19,308 | INFO     | . log creation = 1 s
[2025-11-27 18:06:54] 2025-11-27 23:06:19,308 | INFO     | ..............................
[2025-11-27 18:06:54] 2025-11-27 23:06:19,463 | INFO     | 
[2025-11-27 18:06:54] 2025-11-27 23:06:19,464 | INFO     | job summary report
[2025-11-27 18:06:54] 2025-11-27 23:06:19,464 | INFO     | --------------------------------------------------
[2025-11-27 18:06:54] 2025-11-27 23:06:19,464 | INFO     | PanDA job id: 6896714110
[2025-11-27 18:06:54] 2025-11-27 23:06:19,464 | INFO     | task id: 47556161
[2025-11-27 18:06:54] 2025-11-27 23:06:19,464 | INFO     | errors: (none)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,464 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 18:06:54] 2025-11-27 23:06:19,464 | INFO     | pilot state: finished 
[2025-11-27 18:06:54] 2025-11-27 23:06:19,464 | INFO     | transexitcode: 0
[2025-11-27 18:06:54] 2025-11-27 23:06:19,464 | INFO     | exeerrorcode: 0
[2025-11-27 18:06:54] 2025-11-27 23:06:19,464 | INFO     | exeerrordiag: 
[2025-11-27 18:06:54] 2025-11-27 23:06:19,464 | INFO     | exitcode: 0
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | exitmsg: OK
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | cpuconsumptiontime: 207402 s
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | nevents: 1000
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | neventsw: 0
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | pid: 1518652
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | pgrp: 1518652
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | corecount: 9
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | event service: False
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | sizes: {0: 2284264, 7: 2284526, 11: 2284554, 65994: 2339705, 65999: 2348699, 66001: 2348755, 66008: 2349129}
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | --------------------------------------------------
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | 
[2025-11-27 18:06:54] 2025-11-27 23:06:19,465 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-27 18:06:54] 2025-11-27 23:06:19,481 | INFO     | time since job start (66030s) is within the limit (172800.0s)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,526 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,526 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,526 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,526 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,526 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,526 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,526 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,526 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,526 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,526 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | job 6896714110 has completed (purged errors)
[2025-11-27 18:06:54] 2025-11-27 23:06:19,527 | INFO     | overall cleanup function is called
[2025-11-27 18:06:54] 2025-11-27 23:06:20,546 | INFO     | --- collectZombieJob: --- 10, [1518652]
[2025-11-27 18:06:54] 2025-11-27 23:06:20,547 | INFO     | zombie collector waiting for pid 1518652
[2025-11-27 18:06:54] 2025-11-27 23:06:20,547 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 18:06:54] 2025-11-27 23:06:20,547 | INFO     | collected zombie processes
[2025-11-27 18:06:54] 2025-11-27 23:06:20,547 | INFO     | will attempt to kill all subprocesses of pid=1518652
[2025-11-27 18:06:54] 2025-11-27 23:06:21,998 | INFO     | process IDs to be killed: [1518652] (in reverse order)
[2025-11-27 18:06:54] 2025-11-27 23:06:22,302 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 18:06:54] 2025-11-27 23:06:22,303 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 18:06:54] 2025-11-27 23:06:22,323 | INFO     | did not find any defunct processes belonging to 1518652
[2025-11-27 18:06:54] 2025-11-27 23:06:22,342 | INFO     | did not find any defunct processes belonging to 1518652
[2025-11-27 18:06:54] 2025-11-27 23:06:22,343 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 18:06:54] 2025-11-27 23:06:22,343 | INFO     | ready for new job
[2025-11-27 18:06:54] 2025-11-27 23:06:22,344 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 18:06:54] 2025-11-27 23:06:22,357 | INFO     | ***************************************
[2025-11-27 18:06:54] 2025-11-27 23:06:22,357 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 18:06:54] 2025-11-27 23:06:22,358 | INFO     | ***************************************
[2025-11-27 18:06:54] 2025-11-27 23:06:22,358 | INFO     | 
[2025-11-27 18:06:54] 2025-11-27 23:06:22,386 | INFO     | architecture information:
[2025-11-27 18:06:54] 2025-11-27 23:06:22,396 | INFO     | executing command: cat /etc/os-release
[2025-11-27 18:06:54] 2025-11-27 23:06:22,419 | INFO     | cat /etc/os-release:
[2025-11-27 18:06:54] NAME="CentOS Linux"
[2025-11-27 18:06:54] VERSION="7 (Core)"
[2025-11-27 18:06:54] ID="centos"
[2025-11-27 18:06:54] ID_LIKE="rhel fedora"
[2025-11-27 18:06:54] VERSION_ID="7"
[2025-11-27 18:06:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 18:06:54] ANSI_COLOR="0;31"
[2025-11-27 18:06:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 18:06:54] HOME_URL="https://www.centos.org/"
[2025-11-27 18:06:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 18:06:54] 
[2025-11-27 18:06:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 18:06:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 18:06:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 18:06:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 18:06:54] 
[2025-11-27 18:06:54] 2025-11-27 23:06:22,420 | INFO     | ***************************************
[2025-11-27 18:06:54] 2025-11-27 23:06:22,924 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-27 18:06:54] 2025-11-27 23:06:22,973 | INFO     | sufficient remaining disk space (122835435520 B)
[2025-11-27 18:06:54] 2025-11-27 23:06:22,973 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 18:06:54] 2025-11-27 23:06:22,973 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 18:06:54] 2025-11-27 23:06:22,974 | INFO     | update_server=False
[2025-11-27 18:06:54] 2025-11-27 23:06:22,974 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 18:06:54] 2025-11-27 23:06:22,975 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 18:06:54] 2025-11-27 23:06:22,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 18:06:54] 2025-11-27 23:06:23,165 | INFO     | all job control threads have been joined
[2025-11-27 18:06:54] 2025-11-27 23:06:23,179 | INFO     | all payload control threads have been joined
[2025-11-27 18:06:54] 2025-11-27 23:06:23,884 | INFO     | all data control threads have been joined
[2025-11-27 18:06:54] 2025-11-27 23:06:23,894 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:06:54] 2025-11-27 23:06:23,895 | INFO     | aborting loop
[2025-11-27 18:06:54] 2025-11-27 23:06:23,979 | INFO     | [job] retrieve thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:24,171 | INFO     | [job] control thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:24,186 | INFO     | [payload] control thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:24,486 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 18:06:54] 2025-11-27 23:06:24,533 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:24,568 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:24,595 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:24,665 | INFO     | [job] validate thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:24,668 | INFO     | [payload] failed_post thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:24,756 | INFO     | [data] copytool_in thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:24,891 | INFO     | [data] control thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:24,906 | INFO     | [job] job monitor thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:24,982 | INFO     | [data] copytool_out thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:25,364 | INFO     | [payload] validate_post thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:25,383 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:25,506 | INFO     | [job] queue monitor thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:26,986 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 18:06:54] 2025-11-27 23:06:47,762 | INFO     | [monitor] cgroup control has ended
[2025-11-27 18:06:54] 2025-11-27 23:06:49,206 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140442881468224)>', '<ExcThread(monitor, started 140442402285312)>']
[2025-11-27 18:06:54] 2025-11-27 23:06:53,206 | INFO     | PID=1491907 has CPU usage=8.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 18:06:54] 2025-11-27 23:06:53,207 | INFO     | .. there are 32 such processes running
[2025-11-27 18:06:54] 2025-11-27 23:06:53,207 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 18:06:54] 2025-11-27 23:06:53,208 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 18:06:54] 2025-11-27 23:06:53,208 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 18:06:54] 2025-11-27 23:06:53,208 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 18:06:54] 2025-11-27 23:06:53,208 | INFO     | [monitor] control thread has ended
[2025-11-27 18:06:54] 2025-11-27 23:06:54,232 | INFO     | all workflow threads have been joined
[2025-11-27 18:06:54] 2025-11-27 23:06:54,232 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 18:06:54] 2025-11-27 23:06:54,232 | INFO     | traces error code: 0
[2025-11-27 18:06:54] 2025-11-27 23:06:54,232 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 18:06:54] 2025-11-27 23:06:54,540 [wrapper] ==== pilot stdout END ====
[2025-11-27 18:06:54] 2025-11-27 23:06:54,544 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 18:06:54] 2025-11-27 23:06:54,547 [wrapper] pilotpid: 1491907
[2025-11-27 18:06:54] 2025-11-27 23:06:54,549 [wrapper] Pilot exit status: 0
[2025-11-27 18:06:54] 2025-11-27 23:06:54,571 [wrapper] pandaids: 6896714110 6896714110
[2025-11-27 18:06:54] 2025-11-27 23:06:54,681 [wrapper] cleanup supervisor_pilot  943170 1491909
[2025-11-27 18:06:54] 2025-11-27 23:06:54,687 [wrapper] Test setup, not cleaning
[2025-11-27 18:06:54] 2025-11-27 23:06:54,690 [wrapper] apfmon messages muted
[2025-11-27 18:06:54] 2025-11-27 23:06:54,693 [wrapper] ==== wrapper stdout END ====
[2025-11-27 18:06:54] 2025-11-27 23:06:54,695 [wrapper] ==== wrapper stderr END ====
[2025-11-27 18:06:54]  *** Error codes and diagnostics ***
[2025-11-27 18:06:54]     "exeErrorCode": 0,
[2025-11-27 18:06:54]     "exeErrorDiag": "",
[2025-11-27 18:06:54]     "pilotErrorCode": 0,
[2025-11-27 18:06:54]     "pilotErrorDiag": "",
[2025-11-27 18:06:54]  *** Listing of results directory ***
[2025-11-27 18:06:54] total 1731616
[2025-11-27 18:06:54] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-27 18:06:54] -rwx------. 1 boincer umatlas     36292 Nov 25 01:33 runpilot2-wrapper.sh
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:33 queuedata.json
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 18:06:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:00 run_atlas
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:00 job.xml
[2025-11-27 18:06:54] -rw-r--r--. 3 boincer umatlas 410838778 Nov 26 00:00 EVNT.47483658._002120.pool.root.1
[2025-11-27 18:06:54] -rw-r--r--. 3 boincer umatlas 410838778 Nov 26 00:00 ATLAS.root_0
[2025-11-27 18:06:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-27 18:06:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:00 shared
[2025-11-27 18:06:54] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 00:00 input.tar.gz
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:00 boinc_lockfile
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 23:45 pandaJob.out
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas        57 Nov 26 23:45 setup.sh.local
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas    991570 Nov 26 23:45 agis_schedconf.cvmfs.json
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas       534 Nov 27 17:53 boinc_task_state.xml
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 18:01 init_data.xml
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas 926854303 Nov 27 18:04 HITS.47556161._001040.pool.root.1
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas      1064 Nov 27 18:06 memory_monitor_summary.json
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas   1516240 Nov 27 18:06 agis_ddmendpoints.agis.ALL.json
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas   2290178 Nov 27 18:06 log.47556161._001040.job.log.tgz.1
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas      8594 Nov 27 18:06 heartbeat.json
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas        96 Nov 27 18:06 pilot_heartbeat.json
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas        30 Nov 27 18:06 wrapper_checkpoint.txt
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas      4825 Nov 27 18:06 pilotlog.txt
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 18:06 boinc_mmap_file
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas   8065229 Nov 27 18:06 log.47556161._001040.job.log.1
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas       353 Nov 27 18:06 output.list
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas       620 Nov 27 18:06 runtime_log
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas  10373120 Nov 27 18:06 result.tar.gz
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas      9423 Nov 27 18:06 runtime_log.err
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas       788 Nov 27 18:06 4PILDmVn1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmpCMKDmoyYyam.diag
[2025-11-27 18:06:54] -rw-r--r--. 1 boincer umatlas     23494 Nov 27 18:06 stderr.txt
[2025-11-27 18:06:54] HITS file was successfully produced:
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas 926854303 Nov 27 18:04 shared/HITS.pool.root.1
[2025-11-27 18:06:54]  *** Contents of shared directory: ***
[2025-11-27 18:06:54] total 1317080
[2025-11-27 18:06:54] -rw-r--r--. 3 boincer umatlas 410838778 Nov 26 00:00 ATLAS.root_0
[2025-11-27 18:06:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-27 18:06:54] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 00:00 input.tar.gz
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas 926854303 Nov 27 18:04 HITS.pool.root.1
[2025-11-27 18:06:54] -rw-------. 1 boincer umatlas  10373120 Nov 27 18:06 result.tar.gz
18:06:55 (1477567): run_atlas exited; CPU time 208543.553829
18:06:55 (1477567): called boinc_finish(0)

</stderr_txt>
]]>

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