Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
12:18:14 (3689833): wrapper (7.7.26015): starting
12:18:14 (3689833): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 12:18:14] Arguments: --nthreads 9
[2025-11-26 12:18:14] Threads: 9
[2025-11-26 12:18:14] Checking for CVMFS
[2025-11-26 12:18:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 12:18:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 12:18:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 12:18:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 12:18:16] 2.13.3.0 9702 30342 329208 153329 0 327 30688566 32935937 27163 16776704 0 155388567 99.701 110433395 32823 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 12:18:16] CVMFS is ok
[2025-11-26 12:18:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 12:18:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 12:18:16] Further information can be found at the LHC@home message board.
[2025-11-26 12:18:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 12:18:16] Checking for apptainer binary...
[2025-11-26 12:18:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 12:18:16] Running /usr/bin/apptainer --version
[2025-11-26 12:18:16] apptainer version 1.4.4-1.el9
[2025-11-26 12:18:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 12:18:17] c-4-37.aglt2.org
[2025-11-26 12:18:17] apptainer works
[2025-11-26 12:18:17] Set ATHENA_PROC_NUMBER=9
[2025-11-26 12:18:17] Set ATHENA_CORE_NUMBER=9
[2025-11-26 12:18:17] Starting ATLAS job with PandaID=6896045925
[2025-11-26 12:18:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 12:26:02]  *** The last 200 lines of the pilot log: ***
[2025-11-27 12:26:02] 2025-11-27 17:25:28,217 | INFO     | time since job start (86781s) is within the limit (172800.0s)
[2025-11-27 12:26:02] 2025-11-27 17:25:28,800 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-27 12:26:02] 2025-11-27 17:25:28,816 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2599.84415
[2025-11-27 12:26:02] 2025-11-27 17:25:28,822 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6896045925/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 12:26:02] 2025-11-27 17:25:28,823 | INFO     | extracted standard info from prmon json
[2025-11-27 12:26:02] 2025-11-27 17:25:28,823 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 12:26:02] 2025-11-27 17:25:28,823 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 12:26:02] 2025-11-27 17:25:28,847 | INFO     | fitting pss+swap vs Time
[2025-11-27 12:26:02] 2025-11-27 17:25:28,849 | INFO     | sum of square deviations: 889754612182.3711
[2025-11-27 12:26:02] 2025-11-27 17:25:28,912 | INFO     | sum of deviations: 3945607464763.606
[2025-11-27 12:26:02] 2025-11-27 17:25:28,912 | INFO     | mean x: 1764220957.1491907
[2025-11-27 12:26:02] 2025-11-27 17:25:28,913 | INFO     | mean y: 3126183.836734694
[2025-11-27 12:26:02] 2025-11-27 17:25:28,913 | INFO     | intersect: -7820293085.602776
[2025-11-27 12:26:02] 2025-11-27 17:25:28,915 | INFO     | chi2: 9.406339605992803
[2025-11-27 12:26:02] 2025-11-27 17:25:28,916 | INFO     | sum of square deviations: 880396125460.7451
[2025-11-27 12:26:02] 2025-11-27 17:25:28,965 | INFO     | sum of deviations: 4456746102848.939
[2025-11-27 12:26:02] 2025-11-27 17:25:28,966 | INFO     | mean x: 1764220804.6532485
[2025-11-27 12:26:02] 2025-11-27 17:25:28,966 | INFO     | mean y: 3134513.8919491526
[2025-11-27 12:26:02] 2025-11-27 17:25:28,966 | INFO     | intersect: -8927713735.341928
[2025-11-27 12:26:02] 2025-11-27 17:25:28,968 | INFO     | chi2: 6.3865497837013026
[2025-11-27 12:26:02] 2025-11-27 17:25:28,968 | INFO     | current chi2=6.3865497837013026 (change=32.10377201741244 %)
[2025-11-27 12:26:02] 2025-11-27 17:25:28,969 | INFO     | sum of square deviations: 871103500439.0732
[2025-11-27 12:26:02] 2025-11-27 17:25:29,017 | INFO     | sum of deviations: 4731091454231.583
[2025-11-27 12:26:02] 2025-11-27 17:25:29,017 | INFO     | mean x: 1764220652.1573353
[2025-11-27 12:26:02] 2025-11-27 17:25:29,017 | INFO     | mean y: 3139015.0694542876
[2025-11-27 12:26:02] 2025-11-27 17:25:29,018 | INFO     | intersect: -9578603276.854929
[2025-11-27 12:26:02] 2025-11-27 17:25:29,019 | INFO     | chi2: 5.383986594641884
[2025-11-27 12:26:02] 2025-11-27 17:25:29,019 | INFO     | current chi2=5.383986594641884 (change=15.6980407734078 %)
[2025-11-27 12:26:02] 2025-11-27 17:25:29,020 | INFO     | right removable region: 1410
[2025-11-27 12:26:02] 2025-11-27 17:25:29,021 | INFO     | sum of square deviations: 880395129330.7455
[2025-11-27 12:26:02] 2025-11-27 17:25:29,070 | INFO     | sum of deviations: 3375482505337.1084
[2025-11-27 12:26:02] 2025-11-27 17:25:29,070 | INFO     | mean x: 1764221109.6532485
[2025-11-27 12:26:02] 2025-11-27 17:25:29,070 | INFO     | mean y: 3135471.7598870057
[2025-11-27 12:26:02] 2025-11-27 17:25:29,071 | INFO     | intersect: -6760983607.031335
[2025-11-27 12:26:02] 2025-11-27 17:25:29,072 | INFO     | chi2: 5.890372900861212
[2025-11-27 12:26:02] 2025-11-27 17:25:29,072 | INFO     | current chi2=5.890372900861212 (change=37.37869195039014 %)
[2025-11-27 12:26:02] 2025-11-27 17:25:29,074 | INFO     | sum of square deviations: 871101939081.6277
[2025-11-27 12:26:02] 2025-11-27 17:25:29,122 | INFO     | sum of deviations: 3107095981607.8813
[2025-11-27 12:26:02] 2025-11-27 17:25:29,122 | INFO     | monitor loop #5672: job 0:6896045925 is in state 'finished'
[2025-11-27 12:26:02] 2025-11-27 17:25:29,123 | INFO     | mean x: 1764221262.1537917
[2025-11-27 12:26:02] 2025-11-27 17:25:29,123 | INFO     | mean y: 3139872.4245216157
[2025-11-27 12:26:02] 2025-11-27 17:25:29,123 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 12:26:02] 2025-11-27 17:25:29,123 | INFO     | intersect: -6289584949.293009
[2025-11-27 12:26:02] 2025-11-27 17:25:29,125 | INFO     | chi2: 5.088291546962319
[2025-11-27 12:26:02] 2025-11-27 17:25:29,125 | INFO     | current chi2=5.088291546962319 (change=13.616817940025886 %)
[2025-11-27 12:26:02] 2025-11-27 17:25:29,125 | INFO     | left removable region: 20
[2025-11-27 12:26:02] 2025-11-27 17:25:29,127 | INFO     | sum of square deviations: 832785820970.4279
[2025-11-27 12:26:02] 2025-11-27 17:25:29,175 | INFO     | sum of deviations: 3735523090075.7207
[2025-11-27 12:26:02] 2025-11-27 17:25:29,175 | INFO     | mean x: 1764221231.6633093
[2025-11-27 12:26:02] 2025-11-27 17:25:29,175 | INFO     | mean y: 3157005.5100719426
[2025-11-27 12:26:02] 2025-11-27 17:25:29,175 | INFO     | intersect: -7910389288.062258
[2025-11-27 12:26:02] 2025-11-27 17:25:29,177 | INFO     | chi2: 0.8135095045508187
[2025-11-27 12:26:02] 2025-11-27 17:25:29,177 | INFO     | current memory leak: 4.49 B/s (using 1390 data points, chi2=0.81)
[2025-11-27 12:26:02] 2025-11-27 17:25:29,178 | INFO     | could have reported an average CPU frequency of 2599 MHz (51 samples)
[2025-11-27 12:26:02] 2025-11-27 17:25:29,179 | INFO     | ..............................
[2025-11-27 12:26:02] 2025-11-27 17:25:29,179 | INFO     | . Timing measurements:
[2025-11-27 12:26:02] 2025-11-27 17:25:29,179 | INFO     | . get job = 0 s
[2025-11-27 12:26:02] 2025-11-27 17:25:29,179 | INFO     | . initial setup = 3 s
[2025-11-27 12:26:02] 2025-11-27 17:25:29,179 | INFO     | . payload setup = 26 s
[2025-11-27 12:26:02] 2025-11-27 17:25:29,179 | INFO     | . stage-in = 0 s
[2025-11-27 12:26:02] 2025-11-27 17:25:29,179 | INFO     | . payload execution = 86684 s
[2025-11-27 12:26:02] 2025-11-27 17:25:29,179 | INFO     | . stage-out = 3 s
[2025-11-27 12:26:02] 2025-11-27 17:25:29,179 | INFO     | . log creation = 1 s
[2025-11-27 12:26:02] 2025-11-27 17:25:29,179 | INFO     | ..............................
[2025-11-27 12:26:02] 2025-11-27 17:25:29,339 | INFO     | 
[2025-11-27 12:26:02] 2025-11-27 17:25:29,339 | INFO     | job summary report
[2025-11-27 12:26:02] 2025-11-27 17:25:29,339 | INFO     | --------------------------------------------------
[2025-11-27 12:26:02] 2025-11-27 17:25:29,339 | INFO     | PanDA job id: 6896045925
[2025-11-27 12:26:02] 2025-11-27 17:25:29,339 | INFO     | task id: 47556173
[2025-11-27 12:26:02] 2025-11-27 17:25:29,340 | INFO     | errors: (none)
[2025-11-27 12:26:02] 2025-11-27 17:25:29,340 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 12:26:02] 2025-11-27 17:25:29,340 | INFO     | pilot state: finished 
[2025-11-27 12:26:02] 2025-11-27 17:25:29,340 | INFO     | transexitcode: 0
[2025-11-27 12:26:02] 2025-11-27 17:25:29,340 | INFO     | exeerrorcode: 0
[2025-11-27 12:26:02] 2025-11-27 17:25:29,340 | INFO     | exeerrordiag: 
[2025-11-27 12:26:02] 2025-11-27 17:25:29,340 | INFO     | exitcode: 0
[2025-11-27 12:26:02] 2025-11-27 17:25:29,340 | INFO     | exitmsg: OK
[2025-11-27 12:26:02] 2025-11-27 17:25:29,340 | INFO     | cpuconsumptiontime: 295717 s
[2025-11-27 12:26:02] 2025-11-27 17:25:29,340 | INFO     | nevents: 1000
[2025-11-27 12:26:02] 2025-11-27 17:25:29,341 | INFO     | neventsw: 0
[2025-11-27 12:26:02] 2025-11-27 17:25:29,341 | INFO     | pid: 3704518
[2025-11-27 12:26:02] 2025-11-27 17:25:29,341 | INFO     | pgrp: 3704518
[2025-11-27 12:26:02] 2025-11-27 17:25:29,341 | INFO     | corecount: 9
[2025-11-27 12:26:02] 2025-11-27 17:25:29,341 | INFO     | event service: False
[2025-11-27 12:26:02] 2025-11-27 17:25:29,341 | INFO     | sizes: {0: 2284136, 1: 2284335, 12: 2284335, 23: 2284363, 26: 2284653, 33: 2284681, 86714: 2352105, 86718: 2361099, 86721: 2361155, 86731: 2361401}
[2025-11-27 12:26:02] 2025-11-27 17:25:29,341 | INFO     | --------------------------------------------------
[2025-11-27 12:26:02] 2025-11-27 17:25:29,341 | INFO     | 
[2025-11-27 12:26:02] 2025-11-27 17:25:29,342 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-27 12:26:02] 2025-11-27 17:25:29,385 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,386 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,386 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,386 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,386 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,386 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,386 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,386 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,386 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,386 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,386 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,387 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,387 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,387 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,387 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,387 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,387 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,387 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 12:26:02] 2025-11-27 17:25:29,387 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,387 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 12:26:02] 2025-11-27 17:25:29,388 | INFO     | job 6896045925 has completed (purged errors)
[2025-11-27 12:26:02] 2025-11-27 17:25:29,388 | INFO     | overall cleanup function is called
[2025-11-27 12:26:02] 2025-11-27 17:25:30,408 | INFO     | --- collectZombieJob: --- 10, [3704518]
[2025-11-27 12:26:02] 2025-11-27 17:25:30,408 | INFO     | zombie collector waiting for pid 3704518
[2025-11-27 12:26:02] 2025-11-27 17:25:30,408 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 12:26:02] 2025-11-27 17:25:30,408 | INFO     | collected zombie processes
[2025-11-27 12:26:02] 2025-11-27 17:25:30,409 | INFO     | will attempt to kill all subprocesses of pid=3704518
[2025-11-27 12:26:02] 2025-11-27 17:25:30,908 | INFO     | process IDs to be killed: [3704518] (in reverse order)
[2025-11-27 12:26:02] 2025-11-27 17:25:31,046 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 12:26:02] 2025-11-27 17:25:31,047 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 12:26:02] 2025-11-27 17:25:31,063 | INFO     | did not find any defunct processes belonging to 3704518
[2025-11-27 12:26:02] 2025-11-27 17:25:31,079 | INFO     | did not find any defunct processes belonging to 3704518
[2025-11-27 12:26:02] 2025-11-27 17:25:31,080 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 12:26:02] 2025-11-27 17:25:31,080 | INFO     | ready for new job
[2025-11-27 12:26:02] 2025-11-27 17:25:31,081 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 12:26:02] 2025-11-27 17:25:31,087 | INFO     | ***************************************
[2025-11-27 12:26:02] 2025-11-27 17:25:31,087 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 12:26:02] 2025-11-27 17:25:31,087 | INFO     | ***************************************
[2025-11-27 12:26:02] 2025-11-27 17:25:31,087 | INFO     | 
[2025-11-27 12:26:02] 2025-11-27 17:25:31,089 | INFO     | architecture information:
[2025-11-27 12:26:02] 2025-11-27 17:25:31,091 | INFO     | executing command: cat /etc/os-release
[2025-11-27 12:26:02] 2025-11-27 17:25:31,117 | INFO     | cat /etc/os-release:
[2025-11-27 12:26:02] NAME="CentOS Linux"
[2025-11-27 12:26:02] VERSION="7 (Core)"
[2025-11-27 12:26:02] ID="centos"
[2025-11-27 12:26:02] ID_LIKE="rhel fedora"
[2025-11-27 12:26:02] VERSION_ID="7"
[2025-11-27 12:26:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 12:26:02] ANSI_COLOR="0;31"
[2025-11-27 12:26:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 12:26:02] HOME_URL="https://www.centos.org/"
[2025-11-27 12:26:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 12:26:02] 
[2025-11-27 12:26:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 12:26:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 12:26:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 12:26:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 12:26:02] 
[2025-11-27 12:26:02] 2025-11-27 17:25:31,117 | INFO     | ***************************************
[2025-11-27 12:26:02] 2025-11-27 17:25:31,639 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-27 12:26:02] 2025-11-27 17:25:31,660 | INFO     | sufficient remaining disk space (70045925376 B)
[2025-11-27 12:26:02] 2025-11-27 17:25:31,661 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 12:26:02] 2025-11-27 17:25:31,661 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 12:26:02] 2025-11-27 17:25:31,661 | INFO     | update_server=False
[2025-11-27 12:26:02] 2025-11-27 17:25:31,661 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 12:26:02] 2025-11-27 17:25:31,777 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 12:26:02] 2025-11-27 17:25:31,988 | INFO     | all data control threads have been joined
[2025-11-27 12:26:02] 2025-11-27 17:25:32,147 | INFO     | all payload control threads have been joined
[2025-11-27 12:26:02] 2025-11-27 17:25:32,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:26:02] 2025-11-27 17:25:32,650 | INFO     | aborting loop
[2025-11-27 12:26:02] 2025-11-27 17:25:32,667 | INFO     | [job] retrieve thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:32,701 | INFO     | [job] validate thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:32,731 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:32,831 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:32,840 | INFO     | [payload] failed_post thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:32,993 | INFO     | [data] control thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:33,000 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:33,153 | INFO     | [payload] control thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:33,308 | INFO     | all job control threads have been joined
[2025-11-27 12:26:02] 2025-11-27 17:25:33,645 | INFO     | [data] copytool_in thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:33,656 | INFO     | [job] job monitor thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:33,795 | INFO     | [data] copytool_out thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:34,123 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:34,163 | INFO     | [payload] validate_post thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:34,312 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 12:26:02] 2025-11-27 17:25:34,323 | INFO     | [job] control thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:34,498 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 12:26:02] 2025-11-27 17:25:35,340 | INFO     | [job] queue monitor thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:38,516 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 12:26:02] 2025-11-27 17:25:39,374 | INFO     | [monitor] cgroup control has ended
[2025-11-27 12:26:02] 2025-11-27 17:25:40,299 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140449139455808)>', '<ExcThread(monitor, started 140448492406528)>']
[2025-11-27 12:26:02] 2025-11-27 17:25:45,325 | INFO     | all workflow threads have been joined
[2025-11-27 12:26:02] 2025-11-27 17:25:45,325 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 12:26:02] 2025-11-27 17:25:45,325 | INFO     | traces error code: 0
[2025-11-27 12:26:02] 2025-11-27 17:25:45,326 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 12:26:02] 2025-11-27 17:26:01,812 | INFO     | PID=3694297 has CPU usage=8.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 12:26:02] 2025-11-27 17:26:01,812 | INFO     | .. there are 40 such processes running
[2025-11-27 12:26:02] 2025-11-27 17:26:01,812 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 12:26:02] 2025-11-27 17:26:01,813 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 12:26:02] 2025-11-27 17:26:01,813 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 12:26:02] 2025-11-27 17:26:01,813 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 12:26:02] 2025-11-27 17:26:01,813 | INFO     | [monitor] control thread has ended
[2025-11-27 12:26:02] 2025-11-27 17:26:01,955 [wrapper] ==== pilot stdout END ====
[2025-11-27 12:26:02] 2025-11-27 17:26:01,958 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 12:26:02] 2025-11-27 17:26:01,961 [wrapper] pilotpid: 3694297
[2025-11-27 12:26:02] 2025-11-27 17:26:01,964 [wrapper] Pilot exit status: 0
[2025-11-27 12:26:02] 2025-11-27 17:26:02,003 [wrapper] pandaids: 6896045925
[2025-11-27 12:26:02] 2025-11-27 17:26:02,085 [wrapper] cleanup supervisor_pilot  851235 3694298
[2025-11-27 12:26:02] 2025-11-27 17:26:02,088 [wrapper] Test setup, not cleaning
[2025-11-27 12:26:02] 2025-11-27 17:26:02,090 [wrapper] apfmon messages muted
[2025-11-27 12:26:02] 2025-11-27 17:26:02,094 [wrapper] ==== wrapper stdout END ====
[2025-11-27 12:26:02] 2025-11-27 17:26:02,108 [wrapper] ==== wrapper stderr END ====
[2025-11-27 12:26:02]  *** Error codes and diagnostics ***
[2025-11-27 12:26:02]     "exeErrorCode": 0,
[2025-11-27 12:26:02]     "exeErrorDiag": "",
[2025-11-27 12:26:02]     "pilotErrorCode": 0,
[2025-11-27 12:26:02]     "pilotErrorDiag": "",
[2025-11-27 12:26:02]  *** Listing of results directory ***
[2025-11-27 12:26:02] total 1329952
[2025-11-27 12:26:02] -rwx------. 1 boincer umatlas     36292 Nov 24 14:02 runpilot2-wrapper.sh
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:02 queuedata.json
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas       100 Nov 26 12:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 12:26:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 12:18 run_atlas
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas       105 Nov 26 12:18 job.xml
[2025-11-27 12:26:02] -rw-r--r--. 2 boincer umatlas 409371446 Nov 26 12:18 EVNT.47483658._003042.pool.root.1
[2025-11-27 12:26:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 12:18 start_atlas.sh
[2025-11-27 12:26:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 12:18 shared
[2025-11-27 12:26:02] -rw-r--r--. 2 boincer umatlas    590093 Nov 26 12:18 input.tar.gz
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas         0 Nov 26 12:18 boinc_lockfile
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas      2782 Nov 26 12:18 pandaJob.out
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas        57 Nov 26 12:18 setup.sh.local
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas    991530 Nov 26 12:19 agis_schedconf.cvmfs.json
[2025-11-27 12:26:02] drwx------. 5 boincer umatlas      4096 Nov 26 12:19 pilot3
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas       533 Nov 27 12:07 boinc_task_state.xml
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas      6661 Nov 27 12:21 init_data.xml
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas 920305419 Nov 27 12:24 HITS.47556173._000241.pool.root.1
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas        95 Nov 27 12:25 pilot_heartbeat.json
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas      1059 Nov 27 12:25 memory_monitor_summary.json
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas   1516240 Nov 27 12:25 agis_ddmendpoints.agis.ALL.json
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas   2603996 Nov 27 12:25 log.47556173._000241.job.log.tgz.1
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas      8622 Nov 27 12:25 heartbeat.json
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 12:25 boinc_mmap_file
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas        29 Nov 27 12:25 wrapper_checkpoint.txt
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas       823 Nov 27 12:26 pilotlog.txt
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas  11533932 Nov 27 12:26 log.47556173._000241.job.log.1
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas       353 Nov 27 12:26 output.list
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas       620 Nov 27 12:26 runtime_log
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas  14161920 Nov 27 12:26 result.tar.gz
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas      9333 Nov 27 12:26 runtime_log.err
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas       658 Nov 27 12:26 DvKLDmk0qh8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVAJKDmcrN8gn.diag
[2025-11-27 12:26:02] -rw-r--r--. 1 boincer umatlas     21357 Nov 27 12:26 stderr.txt
[2025-11-27 12:26:02] HITS file was successfully produced:
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas 920305419 Nov 27 12:24 shared/HITS.pool.root.1
[2025-11-27 12:26:02]  *** Contents of shared directory: ***
[2025-11-27 12:26:02] total 1312948
[2025-11-27 12:26:02] -rw-r--r--. 2 boincer umatlas 409371446 Nov 26 12:18 ATLAS.root_0
[2025-11-27 12:26:02] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 12:18 start_atlas.sh
[2025-11-27 12:26:02] -rw-r--r--. 2 boincer umatlas    590093 Nov 26 12:18 input.tar.gz
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas 920305419 Nov 27 12:24 HITS.pool.root.1
[2025-11-27 12:26:02] -rw-------. 1 boincer umatlas  14161920 Nov 27 12:26 result.tar.gz
12:26:03 (3689833): run_atlas exited; CPU time 297965.744703
12:26:03 (3689833): called boinc_finish(0)

</stderr_txt>
]]>

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