Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:13 (3871920): wrapper (7.7.26015): starting
00:01:13 (3871920): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:13] Arguments: --nthreads 9
[2025-11-26 00:01:13] Threads: 9
[2025-11-26 00:01:13] Checking for CVMFS
[2025-11-26 00:01:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:16] 2.13.3.0 11830 29468 365772 153309 0 576 28851510 32935936 35938 16776704 0 160666586 99.552 176480046 32977 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:16] CVMFS is ok
[2025-11-26 00:01:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:16] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:16] Checking for apptainer binary...
[2025-11-26 00:01:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:16] Running /usr/bin/apptainer --version
[2025-11-26 00:01:16] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:17] c6-8-25-1.aglt2.org
[2025-11-26 00:01:17] apptainer works
[2025-11-26 00:01:17] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:17] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:17] Starting ATLAS job with PandaID=6896713869
[2025-11-26 00:01:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 02:12:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 02:12:35] 2025-11-27 05:36:59,976 | INFO     | time since job start (88469s) is within the limit (172800.0s)
[2025-11-27 02:12:35] 2025-11-27 05:37:01,197 | INFO     | monitor loop #4434: job 0:6896713869 is in state 'finished'
[2025-11-27 02:12:35] 2025-11-27 05:37:01,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:12:35] 2025-11-27 05:37:01,984 | INFO     | time since job start (88471s) is within the limit (172800.0s)
[2025-11-27 02:12:35] 2025-11-27 05:37:03,715 | INFO     | monitor loop #4435: job 0:6896713869 is in state 'finished'
[2025-11-27 02:12:35] 2025-11-27 05:37:03,716 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:12:35] 2025-11-27 05:37:03,990 | INFO     | time since job start (88473s) is within the limit (172800.0s)
[2025-11-27 02:12:35] 2025-11-27 05:37:05,996 | INFO     | time since job start (88475s) is within the limit (172800.0s)
[2025-11-27 02:12:35] 2025-11-27 05:37:06,222 | INFO     | monitor loop #4436: job 0:6896713869 is in state 'finished'
[2025-11-27 02:12:35] 2025-11-27 05:37:06,223 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:12:35] 2025-11-27 05:37:08,002 | INFO     | time since job start (88478s) is within the limit (172800.0s)
[2025-11-27 02:12:35] 2025-11-27 05:37:08,727 | INFO     | monitor loop #4437: job 0:6896713869 is in state 'finished'
[2025-11-27 02:12:35] 2025-11-27 05:37:08,728 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:12:35] 2025-11-27 05:37:10,009 | INFO     | time since job start (88480s) is within the limit (172800.0s)
[2025-11-27 02:12:35] 2025-11-27 05:37:11,093 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 02:12:35] 2025-11-27 05:37:11,131 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2570.4084583333342
[2025-11-27 02:12:35] 2025-11-27 05:37:11,306 | INFO     | monitor loop #4438: job 0:6896713869 is in state 'finished'
[2025-11-27 02:12:35] 2025-11-27 05:37:11,306 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 02:12:35] 2025-11-27 05:37:11,388 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6896713869/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 02:12:35] 2025-11-27 05:37:11,388 | INFO     | extracted standard info from prmon json
[2025-11-27 02:12:35] 2025-11-27 05:37:11,389 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 02:12:35] 2025-11-27 05:37:11,389 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 02:12:35] 2025-11-27 05:37:11,496 | INFO     | fitting pss+swap vs Time
[2025-11-27 02:12:35] 2025-11-27 05:37:11,556 | INFO     | sum of square deviations: 939413998270.9845
[2025-11-27 02:12:35] 2025-11-27 05:37:11,816 | INFO     | sum of deviations: 3862258626516.539
[2025-11-27 02:12:35] 2025-11-27 05:37:11,816 | INFO     | mean x: 1764177607.374568
[2025-11-27 02:12:35] 2025-11-27 05:37:11,816 | INFO     | mean y: 2987292.4547339324
[2025-11-27 02:12:35] 2025-11-27 05:37:11,817 | INFO     | intersect: -7250162219.188206
[2025-11-27 02:12:35] 2025-11-27 05:37:11,827 | INFO     | chi2: 21.1273437734936
[2025-11-27 02:12:35] 2025-11-27 05:37:11,829 | INFO     | sum of square deviations: 929710273001.349
[2025-11-27 02:12:35] 2025-11-27 05:37:12,036 | INFO     | time since job start (88482s) is within the limit (172800.0s)
[2025-11-27 02:12:35] 2025-11-27 05:37:12,038 | INFO     | sum of deviations: 4364115716559.749
[2025-11-27 02:12:35] 2025-11-27 05:37:12,038 | INFO     | mean x: 1764177454.886269
[2025-11-27 02:12:35] 2025-11-27 05:37:12,038 | INFO     | mean y: 2995177.6692094314
[2025-11-27 02:12:35] 2025-11-27 05:37:12,038 | INFO     | intersect: -8278159480.130697
[2025-11-27 02:12:35] 2025-11-27 05:37:12,069 | INFO     | chi2: 17.882895443213467
[2025-11-27 02:12:35] 2025-11-27 05:37:12,070 | INFO     | current chi2=17.882895443213467 (change=15.35663150590006 %)
[2025-11-27 02:12:35] 2025-11-27 05:37:12,070 | INFO     | right removable region: 1441
[2025-11-27 02:12:35] 2025-11-27 05:37:12,072 | INFO     | sum of square deviations: 929707294371.3494
[2025-11-27 02:12:35] 2025-11-27 05:37:12,378 | INFO     | sum of deviations: 3263672792108.507
[2025-11-27 02:12:35] 2025-11-27 05:37:12,379 | INFO     | mean x: 1764177759.886269
[2025-11-27 02:12:35] 2025-11-27 05:37:12,379 | INFO     | mean y: 2996696.545769764
[2025-11-27 02:12:35] 2025-11-27 05:37:12,379 | INFO     | intersect: -6190026624.065045
[2025-11-27 02:12:35] 2025-11-27 05:37:12,385 | INFO     | chi2: 17.07126967609373
[2025-11-27 02:12:35] 2025-11-27 05:37:12,386 | INFO     | current chi2=17.07126967609373 (change=19.198220755458266 %)
[2025-11-27 02:12:35] 2025-11-27 05:37:12,386 | INFO     | left removable region: 10
[2025-11-27 02:12:35] 2025-11-27 05:37:12,394 | INFO     | sum of square deviations: 908591970308.5677
[2025-11-27 02:12:35] 2025-11-27 05:37:12,506 | INFO     | sum of deviations: 3391607970912.6396
[2025-11-27 02:12:35] 2025-11-27 05:37:12,528 | INFO     | mean x: 1764177729.4116004
[2025-11-27 02:12:35] 2025-11-27 05:37:12,528 | INFO     | mean y: 3013639.9496855345
[2025-11-27 02:12:35] 2025-11-27 05:37:12,528 | INFO     | intersect: -6582339791.191598
[2025-11-27 02:12:35] 2025-11-27 05:37:12,530 | INFO     | chi2: 10.784575788938096
[2025-11-27 02:12:35] 2025-11-27 05:37:12,530 | INFO     | current memory leak: 3.73 B/s (using 1431 data points, chi2=10.78)
[2025-11-27 02:12:35] 2025-11-27 05:37:12,556 | INFO     | could have reported an average CPU frequency of 2629 MHz (51 samples)
[2025-11-27 02:12:35] 2025-11-27 05:37:12,557 | INFO     | ..............................
[2025-11-27 02:12:35] 2025-11-27 05:37:12,557 | INFO     | . Timing measurements:
[2025-11-27 02:12:35] 2025-11-27 05:37:12,557 | INFO     | . get job = 0 s
[2025-11-27 02:12:35] 2025-11-27 05:37:12,557 | INFO     | . initial setup = 7 s
[2025-11-27 02:12:35] 2025-11-27 05:37:12,557 | INFO     | . payload setup = 52 s
[2025-11-27 02:12:35] 2025-11-27 05:37:12,557 | INFO     | . stage-in = 0 s
[2025-11-27 02:12:35] 2025-11-27 05:37:12,557 | INFO     | . payload execution = 88294 s
[2025-11-27 02:12:35] 2025-11-27 05:37:12,557 | INFO     | . stage-out = 19 s
[2025-11-27 02:12:35] 2025-11-27 05:37:12,557 | INFO     | . log creation = 3 s
[2025-11-27 02:12:35] 2025-11-27 05:37:12,578 | INFO     | ..............................
[2025-11-27 02:12:35] 2025-11-27 05:37:13,400 | INFO     | 
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | job summary report
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | --------------------------------------------------
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | PanDA job id: 6896713869
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | task id: 47556161
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | errors: (none)
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | pilot state: finished 
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | transexitcode: 0
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | exeerrorcode: 0
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | exeerrordiag: 
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | exitcode: 0
[2025-11-27 02:12:35] 2025-11-27 05:37:13,401 | INFO     | exitmsg: OK
[2025-11-27 02:12:35] 2025-11-27 05:37:13,402 | INFO     | cpuconsumptiontime: 260695 s
[2025-11-27 02:12:35] 2025-11-27 05:37:13,402 | INFO     | nevents: 1000
[2025-11-27 02:12:35] 2025-11-27 05:37:13,402 | INFO     | neventsw: 0
[2025-11-27 02:12:35] 2025-11-27 05:37:13,402 | INFO     | pid: 3933854
[2025-11-27 02:12:35] 2025-11-27 05:37:13,402 | INFO     | pgrp: 3933854
[2025-11-27 02:12:35] 2025-11-27 05:37:13,402 | INFO     | corecount: 9
[2025-11-27 02:12:35] 2025-11-27 05:37:13,402 | INFO     | event service: False
[2025-11-27 02:12:35] 2025-11-27 05:37:13,402 | INFO     | sizes: {0: 2284036, 1: 2284064, 2: 2284263, 13: 2284263, 24: 2284319, 31: 2284609, 35: 2284765, 88354: 2349038, 88355: 2349037, 88376: 2358087, 88378: 2358143, 884
[2025-11-27 02:12:35] 2025-11-27 05:37:13,402 | INFO     | --------------------------------------------------
[2025-11-27 02:12:35] 2025-11-27 05:37:13,402 | INFO     | 
[2025-11-27 02:12:35] 2025-11-27 05:37:13,402 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 02:12:35] 2025-11-27 05:37:13,529 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,529 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,529 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,529 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,529 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,530 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 02:12:35] 2025-11-27 05:37:13,531 | INFO     | job 6896713869 has completed (purged errors)
[2025-11-27 02:12:35] 2025-11-27 05:37:13,531 | INFO     | overall cleanup function is called
[2025-11-27 02:12:35] 2025-11-27 05:37:14,576 | INFO     | --- collectZombieJob: --- 10, [3933854]
[2025-11-27 02:12:35] 2025-11-27 05:37:14,577 | INFO     | zombie collector waiting for pid 3933854
[2025-11-27 02:12:35] 2025-11-27 05:37:14,577 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 02:12:35] 2025-11-27 05:37:14,577 | INFO     | collected zombie processes
[2025-11-27 02:12:35] 2025-11-27 05:37:14,577 | INFO     | will attempt to kill all subprocesses of pid=3933854
[2025-11-27 02:12:35] 2025-11-27 05:37:20,616 | INFO     | process IDs to be killed: [3933854] (in reverse order)
[2025-11-27 02:12:35] 2025-11-27 05:37:21,288 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 02:12:35] 2025-11-27 05:37:21,289 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 02:12:35] 2025-11-27 05:37:21,320 | INFO     | did not find any defunct processes belonging to 3933854
[2025-11-27 02:12:35] 2025-11-27 05:37:21,417 | INFO     | did not find any defunct processes belonging to 3933854
[2025-11-27 02:12:35] 2025-11-27 05:37:21,500 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 02:12:35] 2025-11-27 05:37:21,500 | INFO     | ready for new job
[2025-11-27 02:12:35] 2025-11-27 05:37:21,500 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 02:12:35] 2025-11-27 05:37:21,521 | INFO     | ***************************************
[2025-11-27 02:12:35] 2025-11-27 05:37:21,522 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 02:12:35] 2025-11-27 05:37:21,522 | INFO     | ***************************************
[2025-11-27 02:12:35] 2025-11-27 05:37:21,522 | INFO     | 
[2025-11-27 02:12:35] 2025-11-27 05:37:21,556 | INFO     | architecture information:
[2025-11-27 02:12:35] 2025-11-27 05:37:21,578 | INFO     | executing command: cat /etc/os-release
[2025-11-27 02:12:35] 2025-11-27 05:37:21,794 | INFO     | cat /etc/os-release:
[2025-11-27 02:12:35] NAME="CentOS Linux"
[2025-11-27 02:12:35] VERSION="7 (Core)"
[2025-11-27 02:12:35] ID="centos"
[2025-11-27 02:12:35] ID_LIKE="rhel fedora"
[2025-11-27 02:12:35] VERSION_ID="7"
[2025-11-27 02:12:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 02:12:35] ANSI_COLOR="0;31"
[2025-11-27 02:12:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 02:12:35] HOME_URL="https://www.centos.org/"
[2025-11-27 02:12:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 02:12:35] 
[2025-11-27 02:12:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 02:12:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 02:12:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 02:12:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 02:12:35] 
[2025-11-27 02:12:35] 2025-11-27 05:37:21,794 | INFO     | ***************************************
[2025-11-27 02:12:35] 2025-11-27 05:37:22,297 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 02:12:35] 2025-11-27 05:37:22,475 | INFO     | sufficient remaining disk space (65307410432 B)
[2025-11-27 02:12:35] 2025-11-27 05:37:22,475 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 02:12:35] 2025-11-27 05:37:22,476 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 02:12:35] 2025-11-27 05:37:22,476 | INFO     | update_server=False
[2025-11-27 02:12:35] 2025-11-27 05:37:22,476 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 02:12:35] 2025-11-27 05:37:22,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 02:12:35] 2025-11-27 05:37:22,511 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:12:35] 2025-11-27 05:37:22,631 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 02:12:35] 2025-11-27 05:37:22,632 | INFO     | aborting loop
[2025-11-27 02:12:35] 2025-11-27 05:37:22,846 | INFO     | all payload control threads have been joined
[2025-11-27 02:12:35] 2025-11-27 05:37:23,482 | INFO     | [job] retrieve thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:23,517 | INFO     | [job] queue monitor thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:23,523 | INFO     | all data control threads have been joined
[2025-11-27 02:12:35] 2025-11-27 05:37:23,654 | INFO     | [payload] failed_post thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:23,654 | INFO     | [job] job monitor thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:23,852 | INFO     | [payload] control thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:23,917 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 02:12:35] 2025-11-27 05:37:23,988 | INFO     | all job control threads have been joined
[2025-11-27 02:12:35] 2025-11-27 05:37:24,360 | INFO     | [job] validate thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:24,361 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:24,556 | INFO     | [data] control thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:24,557 | INFO     | [payload] validate_post thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:24,658 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:24,705 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:24,903 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:24,913 | INFO     | [data] copytool_in thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:25,013 | INFO     | [job] control thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:25,973 | INFO     | [data] copytool_out thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:26,538 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 02:12:35] 2025-11-27 05:37:51,693 | INFO     | PID=3896381 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 02:12:35] 2025-11-27 05:37:51,693 | INFO     | .. there are 56 such processes running
[2025-11-27 02:12:35] 2025-11-27 05:37:51,693 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 02:12:35] 2025-11-27 05:37:51,693 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 02:12:35] 2025-11-27 05:37:51,693 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 02:12:35] 2025-11-27 05:38:13,924 | INFO     | [monitor] cgroup control has ended
[2025-11-27 02:12:35] 2025-11-27 05:38:14,975 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140411359188800)>', '<ExcThread(monitor, started 140410726901504)>']
[2025-11-27 02:12:35] 2025-11-27 05:38:15,969 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 02:12:35] 2025-11-27 05:38:15,970 | INFO     | [monitor] control thread has ended
[2025-11-27 02:12:35] 2025-11-27 05:38:20,019 | INFO     | all workflow threads have been joined
[2025-11-27 02:12:35] 2025-11-27 05:38:20,020 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 02:12:35] 2025-11-27 05:38:20,020 | INFO     | traces error code: 0
[2025-11-27 02:12:35] 2025-11-27 05:38:20,020 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 02:12:35] 2025-11-27 05:38:21,926 [wrapper] ==== pilot stdout END ====
[2025-11-27 02:12:35] 2025-11-27 05:38:21,965 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 02:12:35] 2025-11-27 05:38:21,976 [wrapper] pilotpid: 3896381
[2025-11-27 02:12:35] 2025-11-27 05:38:22,004 [wrapper] Pilot exit status: 0
[2025-11-27 02:12:35] 2025-11-27 05:38:22,103 [wrapper] pandaids: 6896713869
[2025-11-27 02:12:35] 2025-11-27 05:38:22,519 [wrapper] cleanup supervisor_pilot 3578473 3896382
[2025-11-27 02:12:35] 2025-11-27 05:38:22,547 [wrapper] Test setup, not cleaning
[2025-11-27 02:12:35] 2025-11-27 05:38:22,582 [wrapper] apfmon messages muted
[2025-11-27 02:12:35] 2025-11-27 05:38:22,626 [wrapper] ==== wrapper stdout END ====
[2025-11-27 02:12:35] 2025-11-27 05:38:22,642 [wrapper] ==== wrapper stderr END ====
[2025-11-27 02:12:35]  *** Error codes and diagnostics ***
[2025-11-27 02:12:35]     "exeErrorCode": 0,
[2025-11-27 02:12:35]     "exeErrorDiag": "",
[2025-11-27 02:12:35]     "pilotErrorCode": 0,
[2025-11-27 02:12:35]     "pilotErrorDiag": "",
[2025-11-27 02:12:35]  *** Listing of results directory ***
[2025-11-27 02:12:35] total 1318496
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:10 queuedata.json
[2025-11-27 02:12:35] -rwx------. 1 boincer umatlas     36292 Nov 25 01:15 runpilot2-wrapper.sh
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 02:12:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-27 02:12:35] -rw-r--r--. 2 boincer umatlas 408816330 Nov 26 00:01 EVNT.47483658._002118.pool.root.1
[2025-11-27 02:12:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 02:12:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-27 02:12:35] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 00:01 input.tar.gz
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas      2781 Nov 26 00:01 pandaJob.out
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-27 02:12:35] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas       533 Nov 27 00:09 boinc_task_state.xml
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas 912181856 Nov 27 00:34 HITS.47556161._001011.pool.root.1
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas      1057 Nov 27 00:36 memory_monitor_summary.json
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas   1516240 Nov 27 00:36 agis_ddmendpoints.agis.ALL.json
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas   2519633 Nov 27 00:36 log.47556161._001011.job.log.tgz.1
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas        95 Nov 27 00:36 pilot_heartbeat.json
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas      8620 Nov 27 00:37 heartbeat.json
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas      4824 Nov 27 00:38 pilotlog.txt
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas  10090644 Nov 27 00:38 log.47556161._001011.job.log.1
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas       353 Nov 27 00:38 output.list
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas       620 Nov 27 00:38 runtime_log
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas  12625920 Nov 27 00:38 result.tar.gz
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas      9348 Nov 27 00:38 runtime_log.err
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas       661 Nov 27 00:38 4W9KDmaV1h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXNJKDmZaAZTo.diag
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas        29 Nov 27 02:12 wrapper_checkpoint.txt
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas      6878 Nov 27 02:12 init_data.xml
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 02:12 boinc_mmap_file
[2025-11-27 02:12:35] -rw-r--r--. 1 boincer umatlas     21815 Nov 27 02:12 stderr.txt
[2025-11-27 02:12:35] HITS file was successfully produced:
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas 912181856 Nov 27 00:34 shared/HITS.pool.root.1
[2025-11-27 02:12:35]  *** Contents of shared directory: ***
[2025-11-27 02:12:35] total 1302976
[2025-11-27 02:12:35] -rw-r--r--. 2 boincer umatlas 408816330 Nov 26 00:01 ATLAS.root_0
[2025-11-27 02:12:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 02:12:35] -rw-r--r--. 2 boincer umatlas    590100 Nov 26 00:01 input.tar.gz
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas 912181856 Nov 27 00:34 HITS.pool.root.1
[2025-11-27 02:12:35] -rw-------. 1 boincer umatlas  12625920 Nov 27 00:38 result.tar.gz
02:12:37 (3871920): run_atlas exited; CPU time 264526.858212
02:12:37 (3871920): called boinc_finish(0)

</stderr_txt>
]]>

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