Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:51 (3086238): wrapper (7.7.26015): starting
00:01:51 (3086238): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:51] Arguments: --nthreads 9
[2025-11-26 00:01:51] Threads: 9
[2025-11-26 00:01:51] Checking for CVMFS
[2025-11-26 00:01:51] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:51] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:51] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:52] 2.13.3.0 12525 29468 210956 153309 0 127 36487658 40960001 44911 16776704 0 229590505 99.716 178178833 35703 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:52] CVMFS is ok
[2025-11-26 00:01:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:52] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:52] Checking for apptainer binary...
[2025-11-26 00:01:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:52] Running /usr/bin/apptainer --version
[2025-11-26 00:01:52] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:52] c7-4-30.aglt2.org
[2025-11-26 00:01:52] apptainer works
[2025-11-26 00:01:52] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:52] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:52] Starting ATLAS job with PandaID=6896713859
[2025-11-26 00:01:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:41:21]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:41:21] 2025-11-26 23:40:09,061 | INFO     | monitor loop #4094: job 0:6896713859 is in state 'finished'
[2025-11-26 18:41:21] 2025-11-26 23:40:09,061 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:41:21] 2025-11-26 23:40:09,618 | INFO     | time since job start (67073s) is within the limit (172800.0s)
[2025-11-26 18:41:21] 2025-11-26 23:40:09,715 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 18:41:21] 2025-11-26 23:40:09,724 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3096.280302083333
[2025-11-26 18:41:21] 2025-11-26 23:40:09,752 | INFO     | using path: /tmp/boinchome/slots/9/PanDA_Pilot-6896713859/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:41:21] 2025-11-26 23:40:09,757 | INFO     | extracted standard info from prmon json
[2025-11-26 18:41:21] 2025-11-26 23:40:09,757 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:41:21] 2025-11-26 23:40:09,757 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:41:21] 2025-11-26 23:40:09,804 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:41:21] 2025-11-26 23:40:09,805 | INFO     | sum of square deviations: 411596054208.47174
[2025-11-26 18:41:21] 2025-11-26 23:40:09,870 | INFO     | sum of deviations: 3664895130956.5166
[2025-11-26 18:41:21] 2025-11-26 23:40:09,871 | INFO     | mean x: 1764166885.5159235
[2025-11-26 18:41:21] 2025-11-26 23:40:09,871 | INFO     | mean y: 3003752.4276615107
[2025-11-26 18:41:21] 2025-11-26 23:40:09,871 | INFO     | intersect: -15705326205.583275
[2025-11-26 18:41:21] 2025-11-26 23:40:09,872 | INFO     | chi2: 8.774766541623356
[2025-11-26 18:41:21] 2025-11-26 23:40:09,873 | INFO     | sum of square deviations: 406004299334.42773
[2025-11-26 18:41:21] 2025-11-26 23:40:09,912 | INFO     | sum of deviations: 4066634036638.156
[2025-11-26 18:41:21] 2025-11-26 23:40:09,912 | INFO     | mean x: 1764166733.022852
[2025-11-26 18:41:21] 2025-11-26 23:40:09,912 | INFO     | mean y: 3014707.8336380254
[2025-11-26 18:41:21] 2025-11-26 23:40:09,912 | INFO     | intersect: -17667291972.60382
[2025-11-26 18:41:21] 2025-11-26 23:40:09,913 | INFO     | chi2: 5.389505131550485
[2025-11-26 18:41:21] 2025-11-26 23:40:09,913 | INFO     | current chi2=5.389505131550485 (change=38.57950401318128 %)
[2025-11-26 18:41:21] 2025-11-26 23:40:09,914 | INFO     | sum of square deviations: 400463229547.4513
[2025-11-26 18:41:21] 2025-11-26 23:40:09,990 | INFO     | sum of deviations: 4127738093715.205
[2025-11-26 18:41:21] 2025-11-26 23:40:09,990 | INFO     | mean x: 1764166580.527089
[2025-11-26 18:41:21] 2025-11-26 23:40:09,991 | INFO     | mean y: 3016382.38292011
[2025-11-26 18:41:21] 2025-11-26 23:40:09,991 | INFO     | intersect: -18180969214.32242
[2025-11-26 18:41:21] 2025-11-26 23:40:09,992 | INFO     | chi2: 5.017056287773321
[2025-11-26 18:41:21] 2025-11-26 23:40:09,992 | INFO     | current chi2=5.017056287773321 (change=6.910631582792755 %)
[2025-11-26 18:41:21] 2025-11-26 23:40:09,992 | INFO     | right removable region: 1088
[2025-11-26 18:41:21] 2025-11-26 23:40:09,993 | INFO     | sum of square deviations: 406003283074.42633
[2025-11-26 18:41:21] 2025-11-26 23:40:10,072 | INFO     | sum of deviations: 3224062630871.5967
[2025-11-26 18:41:21] 2025-11-26 23:40:10,072 | INFO     | mean x: 1764167038.022852
[2025-11-26 18:41:21] 2025-11-26 23:40:10,072 | INFO     | mean y: 3015772.136197441
[2025-11-26 18:41:21] 2025-11-26 23:40:10,072 | INFO     | intersect: -14006193657.981277
[2025-11-26 18:41:21] 2025-11-26 23:40:10,073 | INFO     | chi2: 5.000297446978157
[2025-11-26 18:41:21] 2025-11-26 23:40:10,073 | INFO     | current chi2=5.000297446978157 (change=43.01503722909204 %)
[2025-11-26 18:41:21] 2025-11-26 23:40:10,082 | INFO     | sum of square deviations: 400461529721.396
[2025-11-26 18:41:21] 2025-11-26 23:40:10,332 | INFO     | sum of deviations: 3006760836574.492
[2025-11-26 18:41:21] 2025-11-26 23:40:10,332 | INFO     | mean x: 1764167190.5280073
[2025-11-26 18:41:21] 2025-11-26 23:40:10,332 | INFO     | mean y: 3021745.7052341597
[2025-11-26 18:41:21] 2025-11-26 23:40:10,332 | INFO     | intersect: -13242766985.461008
[2025-11-26 18:41:21] 2025-11-26 23:40:10,333 | INFO     | chi2: 4.099873324554052
[2025-11-26 18:41:21] 2025-11-26 23:40:10,333 | INFO     | current chi2=4.099873324554052 (change=18.00741119847303 %)
[2025-11-26 18:41:21] 2025-11-26 23:40:10,333 | INFO     | left removable region: 20
[2025-11-26 18:41:21] 2025-11-26 23:40:10,347 | INFO     | sum of square deviations: 377739241335.576
[2025-11-26 18:41:21] 2025-11-26 23:40:10,431 | INFO     | sum of deviations: 3269051653212.737
[2025-11-26 18:41:21] 2025-11-26 23:40:10,431 | INFO     | mean x: 1764167160.036517
[2025-11-26 18:41:21] 2025-11-26 23:40:10,432 | INFO     | mean y: 3039789.981273408
[2025-11-26 18:41:21] 2025-11-26 23:40:10,432 | INFO     | intersect: -15264512372.907648
[2025-11-26 18:41:21] 2025-11-26 23:40:10,448 | INFO     | chi2: 0.16910135744052895
[2025-11-26 18:41:21] 2025-11-26 23:40:10,448 | INFO     | current memory leak: 8.65 B/s (using 1068 data points, chi2=0.17)
[2025-11-26 18:41:21] 2025-11-26 23:40:10,449 | INFO     | could have reported an average CPU frequency of 3108 MHz (40 samples)
[2025-11-26 18:41:21] 2025-11-26 23:40:10,449 | INFO     | ..............................
[2025-11-26 18:41:21] 2025-11-26 23:40:10,449 | INFO     | . Timing measurements:
[2025-11-26 18:41:21] 2025-11-26 23:40:10,449 | INFO     | . get job = 0 s
[2025-11-26 18:41:21] 2025-11-26 23:40:10,449 | INFO     | . initial setup = 3 s
[2025-11-26 18:41:21] 2025-11-26 23:40:10,449 | INFO     | . payload setup = 13 s
[2025-11-26 18:41:21] 2025-11-26 23:40:10,450 | INFO     | . stage-in = 0 s
[2025-11-26 18:41:21] 2025-11-26 23:40:10,450 | INFO     | . payload execution = 67003 s
[2025-11-26 18:41:21] 2025-11-26 23:40:10,450 | INFO     | . stage-out = 6 s
[2025-11-26 18:41:21] 2025-11-26 23:40:10,450 | INFO     | . log creation = 1 s
[2025-11-26 18:41:21] 2025-11-26 23:40:10,450 | INFO     | ..............................
[2025-11-26 18:41:21] 2025-11-26 23:40:10,621 | INFO     | 
[2025-11-26 18:41:21] 2025-11-26 23:40:10,621 | INFO     | job summary report
[2025-11-26 18:41:21] 2025-11-26 23:40:10,621 | INFO     | --------------------------------------------------
[2025-11-26 18:41:21] 2025-11-26 23:40:10,621 | INFO     | PanDA job id: 6896713859
[2025-11-26 18:41:21] 2025-11-26 23:40:10,621 | INFO     | task id: 47556161
[2025-11-26 18:41:21] 2025-11-26 23:40:10,621 | INFO     | errors: (none)
[2025-11-26 18:41:21] 2025-11-26 23:40:10,621 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:41:21] 2025-11-26 23:40:10,621 | INFO     | pilot state: finished 
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | transexitcode: 0
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | exeerrorcode: 0
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | exeerrordiag: 
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | exitcode: 0
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | exitmsg: OK
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | cpuconsumptiontime: 210380 s
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | nevents: 1000
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | neventsw: 0
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | pid: 3111455
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | pgrp: 3111455
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | corecount: 9
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | event service: False
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | sizes: {0: 2284030, 1: 2284285, 12: 2284575, 22: 2284575, 67021: 2341175, 67028: 2350169, 67029: 2350353, 67040: 2350599}
[2025-11-26 18:41:21] 2025-11-26 23:40:10,622 | INFO     | --------------------------------------------------
[2025-11-26 18:41:21] 2025-11-26 23:40:10,623 | INFO     | 
[2025-11-26 18:41:21] 2025-11-26 23:40:10,623 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-26 18:41:21] 2025-11-26 23:40:10,719 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,719 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,719 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,719 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,719 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,719 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,719 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,719 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,720 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,720 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,720 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,720 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,720 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,720 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,759 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,759 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,788 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,788 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:41:21] 2025-11-26 23:40:10,788 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,788 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:41:21] 2025-11-26 23:40:10,788 | INFO     | job 6896713859 has completed (purged errors)
[2025-11-26 18:41:21] 2025-11-26 23:40:10,789 | INFO     | overall cleanup function is called
[2025-11-26 18:41:21] 2025-11-26 23:40:11,823 | INFO     | --- collectZombieJob: --- 10, [3111455]
[2025-11-26 18:41:21] 2025-11-26 23:40:11,823 | INFO     | zombie collector waiting for pid 3111455
[2025-11-26 18:41:21] 2025-11-26 23:40:11,823 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:41:21] 2025-11-26 23:40:11,823 | INFO     | collected zombie processes
[2025-11-26 18:41:21] 2025-11-26 23:40:11,824 | INFO     | will attempt to kill all subprocesses of pid=3111455
[2025-11-26 18:41:21] 2025-11-26 23:40:13,353 | INFO     | process IDs to be killed: [3111455] (in reverse order)
[2025-11-26 18:41:21] 2025-11-26 23:40:13,588 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:41:21] 2025-11-26 23:40:13,589 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:41:21] 2025-11-26 23:40:13,645 | INFO     | did not find any defunct processes belonging to 3111455
[2025-11-26 18:41:21] 2025-11-26 23:40:13,704 | INFO     | did not find any defunct processes belonging to 3111455
[2025-11-26 18:41:21] 2025-11-26 23:40:13,708 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:41:21] 2025-11-26 23:40:13,708 | INFO     | ready for new job
[2025-11-26 18:41:21] 2025-11-26 23:40:13,708 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:41:21] 2025-11-26 23:40:13,720 | INFO     | ***************************************
[2025-11-26 18:41:21] 2025-11-26 23:40:13,720 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:41:21] 2025-11-26 23:40:13,733 | INFO     | ***************************************
[2025-11-26 18:41:21] 2025-11-26 23:40:13,733 | INFO     | 
[2025-11-26 18:41:21] 2025-11-26 23:40:13,758 | INFO     | architecture information:
[2025-11-26 18:41:21] 2025-11-26 23:40:13,770 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:41:21] 2025-11-26 23:40:13,804 | INFO     | cat /etc/os-release:
[2025-11-26 18:41:21] NAME="CentOS Linux"
[2025-11-26 18:41:21] VERSION="7 (Core)"
[2025-11-26 18:41:21] ID="centos"
[2025-11-26 18:41:21] ID_LIKE="rhel fedora"
[2025-11-26 18:41:21] VERSION_ID="7"
[2025-11-26 18:41:21] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:41:21] ANSI_COLOR="0;31"
[2025-11-26 18:41:21] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:41:21] HOME_URL="https://www.centos.org/"
[2025-11-26 18:41:21] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:41:21] 
[2025-11-26 18:41:21] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:41:21] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:41:21] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:41:21] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:41:21] 
[2025-11-26 18:41:21] 2025-11-26 23:40:13,804 | INFO     | ***************************************
[2025-11-26 18:41:21] 2025-11-26 23:40:14,309 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-26 18:41:21] 2025-11-26 23:40:14,359 | INFO     | sufficient remaining disk space (117960605696 B)
[2025-11-26 18:41:21] 2025-11-26 23:40:14,359 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:41:21] 2025-11-26 23:40:14,359 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:41:21] 2025-11-26 23:40:14,359 | INFO     | update_server=False
[2025-11-26 18:41:21] 2025-11-26 23:40:14,359 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:41:21] 2025-11-26 23:40:14,657 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:41:21] 2025-11-26 23:40:14,766 | INFO     | all payload control threads have been joined
[2025-11-26 18:41:21] 2025-11-26 23:40:14,799 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:41:21] 2025-11-26 23:40:15,098 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:41:21] 2025-11-26 23:40:15,098 | INFO     | aborting loop
[2025-11-26 18:41:21] 2025-11-26 23:40:15,268 | INFO     | all data control threads have been joined
[2025-11-26 18:41:21] 2025-11-26 23:40:15,365 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:15,377 | INFO     | [job] validate thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:15,390 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:15,391 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:15,453 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:15,611 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:15,654 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:41:21] 2025-11-26 23:40:15,780 | INFO     | [payload] control thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:15,785 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:15,822 | INFO     | all job control threads have been joined
[2025-11-26 18:41:21] 2025-11-26 23:40:15,891 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:16,105 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:16,274 | INFO     | [data] control thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:16,513 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:16,665 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:16,675 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:16,828 | INFO     | [job] control thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:18,810 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:41:21] 2025-11-26 23:40:44,407 | INFO     | PID=3093231 has CPU usage=8.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:41:21] 2025-11-26 23:40:44,407 | INFO     | .. there are 62 such processes running
[2025-11-26 18:41:21] 2025-11-26 23:40:44,408 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:41:21] 2025-11-26 23:40:44,408 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:41:21] 2025-11-26 23:40:44,408 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:41:21] 2025-11-26 23:41:14,046 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:41:21] 2025-11-26 23:41:15,449 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139802214295360)>', '<ExcThread(monitor, started 139801571350272)>']
[2025-11-26 18:41:21] 2025-11-26 23:41:15,616 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:41:21] 2025-11-26 23:41:15,616 | INFO     | [monitor] control thread has ended
[2025-11-26 18:41:21] 2025-11-26 23:41:20,474 | INFO     | all workflow threads have been joined
[2025-11-26 18:41:21] 2025-11-26 23:41:20,474 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:41:21] 2025-11-26 23:41:20,475 | INFO     | traces error code: 0
[2025-11-26 18:41:21] 2025-11-26 23:41:20,475 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:41:21] 2025-11-26 23:41:20,796 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:41:21] 2025-11-26 23:41:20,807 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:41:21] 2025-11-26 23:41:20,813 [wrapper] pilotpid: 3093231
[2025-11-26 18:41:21] 2025-11-26 23:41:20,826 [wrapper] Pilot exit status: 0
[2025-11-26 18:41:21] 2025-11-26 23:41:20,872 [wrapper] pandaids: 6896713859
[2025-11-26 18:41:21] 2025-11-26 23:41:21,089 [wrapper] cleanup supervisor_pilot 1200288 3093232
[2025-11-26 18:41:21] 2025-11-26 23:41:21,115 [wrapper] Test setup, not cleaning
[2025-11-26 18:41:21] 2025-11-26 23:41:21,130 [wrapper] apfmon messages muted
[2025-11-26 18:41:21] 2025-11-26 23:41:21,135 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:41:21] 2025-11-26 23:41:21,139 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:41:21]  *** Error codes and diagnostics ***
[2025-11-26 18:41:21]     "exeErrorCode": 0,
[2025-11-26 18:41:21]     "exeErrorDiag": "",
[2025-11-26 18:41:21]     "pilotErrorCode": 0,
[2025-11-26 18:41:21]     "pilotErrorDiag": "",
[2025-11-26 18:41:21]  *** Listing of results directory ***
[2025-11-26 18:41:21] total 1318940
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:10 queuedata.json
[2025-11-26 18:41:21] -rwx------. 1 boincer umatlas     36292 Nov 25 01:12 runpilot2-wrapper.sh
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:41:21] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-26 18:41:21] -rw-r--r--. 2 boincer umatlas 409215497 Nov 26 00:01 EVNT.47483658._002117.pool.root.1
[2025-11-26 18:41:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 18:41:21] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-26 18:41:21] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 00:01 input.tar.gz
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas      2781 Nov 26 00:01 pandaJob.out
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-26 18:41:21] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas       533 Nov 26 18:30 boinc_task_state.xml
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas      6949 Nov 26 18:36 init_data.xml
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas 915599923 Nov 26 18:38 HITS.47556161._001001.pool.root.1
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas      1067 Nov 26 18:39 memory_monitor_summary.json
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas        95 Nov 26 18:39 pilot_heartbeat.json
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:39 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas   2327987 Nov 26 18:39 log.47556161._001001.job.log.tgz.1
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas      8627 Nov 26 18:40 heartbeat.json
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:41 boinc_mmap_file
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas        29 Nov 26 18:41 wrapper_checkpoint.txt
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas      4825 Nov 26 18:41 pilotlog.txt
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas   8599098 Nov 26 18:41 log.47556161._001001.job.log.1
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas       353 Nov 26 18:41 output.list
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:41 runtime_log
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas  10946560 Nov 26 18:41 result.tar.gz
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 18:41 runtime_log.err
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas       663 Nov 26 18:41 J7hKDmiS1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmHCMKDmcundfn.diag
[2025-11-26 18:41:21] -rw-r--r--. 1 boincer umatlas     16388 Nov 26 18:41 stderr.txt
[2025-11-26 18:41:21] HITS file was successfully produced:
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas 915599923 Nov 26 18:38 shared/HITS.pool.root.1
[2025-11-26 18:41:21]  *** Contents of shared directory: ***
[2025-11-26 18:41:21] total 1305068
[2025-11-26 18:41:21] -rw-r--r--. 2 boincer umatlas 409215497 Nov 26 00:01 ATLAS.root_0
[2025-11-26 18:41:21] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 18:41:21] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 00:01 input.tar.gz
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas 915599923 Nov 26 18:38 HITS.pool.root.1
[2025-11-26 18:41:21] -rw-------. 1 boincer umatlas  10946560 Nov 26 18:41 result.tar.gz
18:41:23 (3086238): run_atlas exited; CPU time 211813.809736
18:41:23 (3086238): called boinc_finish(0)

</stderr_txt>
]]>

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