Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:11:22 (1000652): wrapper (7.7.26015): starting
00:11:22 (1000652): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:11:22] Arguments: --nthreads 8
[2025-11-26 00:11:22] Threads: 8
[2025-11-26 00:11:22] Checking for CVMFS
[2025-11-26 00:11:22] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:11:23] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:11:23] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:11:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:11:24] 2.13.3.0 12348 29614 366560 153310 2 75 18850251 32935937 38849 16776704 0 147405413 99.488 189549565 35505 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:11:24] CVMFS is ok
[2025-11-26 00:11:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:11:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:11:24] Further information can be found at the LHC@home message board.
[2025-11-26 00:11:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:11:24] Checking for apptainer binary...
[2025-11-26 00:11:24] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:11:24] Running /usr/bin/apptainer --version
[2025-11-26 00:11:24] apptainer version 1.4.4-1.el9
[2025-11-26 00:11:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:11:25] c6-12-27-2.aglt2.org
[2025-11-26 00:11:25] apptainer works
[2025-11-26 00:11:25] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:11:25] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:11:25] Starting ATLAS job with PandaID=6891071872
[2025-11-26 00:11:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/10 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:06:08]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:06:08] 2025-11-27 19:05:19,943 | INFO     | monitor loop #7361: job 0:6891071872 is in state 'finished'
[2025-11-27 14:06:08] 2025-11-27 19:05:19,943 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:06:08] 2025-11-27 19:05:21,899 | INFO     | time since job start (136358s) is within the limit (172800.0s)
[2025-11-27 14:06:08] 2025-11-27 19:05:22,449 | INFO     | monitor loop #7362: job 0:6891071872 is in state 'finished'
[2025-11-27 14:06:08] 2025-11-27 19:05:22,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:06:08] 2025-11-27 19:05:23,908 | INFO     | time since job start (136360s) is within the limit (172800.0s)
[2025-11-27 14:06:08] 2025-11-27 19:05:24,954 | INFO     | monitor loop #7363: job 0:6891071872 is in state 'finished'
[2025-11-27 14:06:08] 2025-11-27 19:05:24,955 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:06:08] 2025-11-27 19:05:25,931 | INFO     | time since job start (136362s) is within the limit (172800.0s)
[2025-11-27 14:06:08] 2025-11-27 19:05:27,470 | INFO     | monitor loop #7364: job 0:6891071872 is in state 'finished'
[2025-11-27 14:06:08] 2025-11-27 19:05:27,470 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:06:08] 2025-11-27 19:05:28,752 | INFO     | PID=1006623 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:06:08] 2025-11-27 19:05:28,753 | INFO     | .. there are 46 such processes running
[2025-11-27 14:06:08] 2025-11-27 19:05:28,951 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 14:06:08] 2025-11-27 19:05:29,001 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2642.8277812500005
[2025-11-27 14:06:08] 2025-11-27 19:05:29,043 | INFO     | using path: /tmp/boinchome/slots/10/PanDA_Pilot-6891071872/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:06:08] 2025-11-27 19:05:29,045 | INFO     | extracted standard info from prmon json
[2025-11-27 14:06:08] 2025-11-27 19:05:29,045 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:06:08] 2025-11-27 19:05:29,045 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:06:08] 2025-11-27 19:05:29,120 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:06:08] 2025-11-27 19:05:29,135 | INFO     | sum of square deviations: 3452552602681.643
[2025-11-27 14:06:08] 2025-11-27 19:05:29,414 | INFO     | sum of deviations: 11757520809291.541
[2025-11-27 14:06:08] 2025-11-27 19:05:29,414 | INFO     | mean x: 1764202200.8741603
[2025-11-27 14:06:08] 2025-11-27 19:05:29,415 | INFO     | mean y: 2888386.9413345275
[2025-11-27 14:06:08] 2025-11-27 19:05:29,415 | INFO     | intersect: -6005027052.917508
[2025-11-27 14:06:08] 2025-11-27 19:05:29,417 | INFO     | chi2: 26.483682311597573
[2025-11-27 14:06:08] 2025-11-27 19:05:29,424 | INFO     | sum of square deviations: 3429413977415.2427
[2025-11-27 14:06:08] 2025-11-27 19:05:29,796 | INFO     | time since job start (136366s) is within the limit (172800.0s)
[2025-11-27 14:06:08] 2025-11-27 19:05:30,161 | INFO     | monitor loop #7365: job 0:6891071872 is in state 'finished'
[2025-11-27 14:06:08] 2025-11-27 19:05:30,161 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:06:08] 2025-11-27 19:05:30,404 | INFO     | sum of deviations: 12484726893250.885
[2025-11-27 14:06:08] 2025-11-27 19:05:30,404 | INFO     | mean x: 1764202048.3806105
[2025-11-27 14:06:08] 2025-11-27 19:05:30,404 | INFO     | mean y: 2893179.0107719926
[2025-11-27 14:06:08] 2025-11-27 19:05:30,405 | INFO     | intersect: -6419656243.018014
[2025-11-27 14:06:08] 2025-11-27 19:05:30,461 | INFO     | chi2: 23.461461858809056
[2025-11-27 14:06:08] 2025-11-27 19:05:30,461 | INFO     | current chi2=23.461461858809056 (change=11.411632329787631 %)
[2025-11-27 14:06:08] 2025-11-27 19:05:30,461 | INFO     | right removable region: 2227
[2025-11-27 14:06:08] 2025-11-27 19:05:30,518 | INFO     | sum of square deviations: 3429410062435.241
[2025-11-27 14:06:08] 2025-11-27 19:05:31,283 | INFO     | sum of deviations: 10823045646263.727
[2025-11-27 14:06:08] 2025-11-27 19:05:31,283 | INFO     | mean x: 1764202353.3806105
[2025-11-27 14:06:08] 2025-11-27 19:05:31,284 | INFO     | mean y: 2894544.711400359
[2025-11-27 14:06:08] 2025-11-27 19:05:31,284 | INFO     | intersect: -5564839337.286212
[2025-11-27 14:06:08] 2025-11-27 19:05:31,295 | INFO     | chi2: 21.95938587891737
[2025-11-27 14:06:08] 2025-11-27 19:05:31,296 | INFO     | current chi2=21.95938587891737 (change=17.08333599326915 %)
[2025-11-27 14:06:08] 2025-11-27 19:05:31,296 | INFO     | left removable region: 10
[2025-11-27 14:06:08] 2025-11-27 19:05:31,309 | INFO     | sum of square deviations: 3378865756795.2983
[2025-11-27 14:06:08] 2025-11-27 19:05:31,875 | INFO     | time since job start (136368s) is within the limit (172800.0s)
[2025-11-27 14:06:08] 2025-11-27 19:05:32,030 | INFO     | sum of deviations: 10875102165451.398
[2025-11-27 14:06:08] 2025-11-27 19:05:32,030 | INFO     | mean x: 1764202322.8944519
[2025-11-27 14:06:08] 2025-11-27 19:05:32,030 | INFO     | mean y: 2905676.813712224
[2025-11-27 14:06:08] 2025-11-27 19:05:32,030 | INFO     | intersect: -5675295791.657998
[2025-11-27 14:06:08] 2025-11-27 19:05:32,051 | INFO     | chi2: 15.046066750678966
[2025-11-27 14:06:08] 2025-11-27 19:05:32,051 | INFO     | current memory leak: 3.22 B/s (using 2217 data points, chi2=15.05)
[2025-11-27 14:06:08] 2025-11-27 19:05:32,076 | INFO     | could have reported an average CPU frequency of 2679 MHz (77 samples)
[2025-11-27 14:06:08] 2025-11-27 19:05:32,076 | INFO     | ..............................
[2025-11-27 14:06:08] 2025-11-27 19:05:32,076 | INFO     | . Timing measurements:
[2025-11-27 14:06:08] 2025-11-27 19:05:32,077 | INFO     | . get job = 0 s
[2025-11-27 14:06:08] 2025-11-27 19:05:32,077 | INFO     | . initial setup = 6 s
[2025-11-27 14:06:08] 2025-11-27 19:05:32,081 | INFO     | . payload setup = 48 s
[2025-11-27 14:06:08] 2025-11-27 19:05:32,081 | INFO     | . stage-in = 0 s
[2025-11-27 14:06:08] 2025-11-27 19:05:32,081 | INFO     | . payload execution = 136195 s
[2025-11-27 14:06:08] 2025-11-27 19:05:32,081 | INFO     | . stage-out = 8 s
[2025-11-27 14:06:08] 2025-11-27 19:05:32,081 | INFO     | . log creation = 2 s
[2025-11-27 14:06:08] 2025-11-27 19:05:32,081 | INFO     | ..............................
[2025-11-27 14:06:08] 2025-11-27 19:05:32,602 | INFO     | 
[2025-11-27 14:06:08] 2025-11-27 19:05:32,602 | INFO     | job summary report
[2025-11-27 14:06:08] 2025-11-27 19:05:32,602 | INFO     | --------------------------------------------------
[2025-11-27 14:06:08] 2025-11-27 19:05:32,602 | INFO     | PanDA job id: 6891071872
[2025-11-27 14:06:08] 2025-11-27 19:05:32,602 | INFO     | task id: 47483661
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | errors: (none)
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | pilot state: finished 
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | transexitcode: 0
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | exeerrorcode: 0
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | exeerrordiag: 
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | exitcode: 0
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | exitmsg: OK
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | cpuconsumptiontime: 267772 s
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | nevents: 1000
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | neventsw: 0
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | pid: 1022579
[2025-11-27 14:06:08] 2025-11-27 19:05:32,603 | INFO     | pgrp: 1022579
[2025-11-27 14:06:08] 2025-11-27 19:05:32,604 | INFO     | corecount: 8
[2025-11-27 14:06:08] 2025-11-27 19:05:32,604 | INFO     | event service: False
[2025-11-27 14:06:08] 2025-11-27 19:05:32,604 | INFO     | sizes: {0: 2284134, 1: 2284162, 2: 2284361, 14: 2284361, 25: 2284389, 36: 2284807, 47: 2284835, 136248: 2371438, 136249: 2371437, 136258: 2380545, 136288: 2380863}
[2025-11-27 14:06:08] 2025-11-27 19:05:32,604 | INFO     | --------------------------------------------------
[2025-11-27 14:06:08] 2025-11-27 19:05:32,604 | INFO     | 
[2025-11-27 14:06:08] 2025-11-27 19:05:32,604 | INFO     | executing command: ls -lF /tmp/boinchome/slots/10
[2025-11-27 14:06:08] 2025-11-27 19:05:32,756 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,756 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,756 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,757 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,758 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,758 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,758 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:06:08] 2025-11-27 19:05:32,758 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,758 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:06:08] 2025-11-27 19:05:32,758 | INFO     | job 6891071872 has completed (purged errors)
[2025-11-27 14:06:08] 2025-11-27 19:05:32,758 | INFO     | overall cleanup function is called
[2025-11-27 14:06:08] 2025-11-27 19:05:33,793 | INFO     | --- collectZombieJob: --- 10, [1022579]
[2025-11-27 14:06:08] 2025-11-27 19:05:33,793 | INFO     | zombie collector waiting for pid 1022579
[2025-11-27 14:06:08] 2025-11-27 19:05:33,793 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:06:08] 2025-11-27 19:05:33,793 | INFO     | collected zombie processes
[2025-11-27 14:06:08] 2025-11-27 19:05:33,793 | INFO     | will attempt to kill all subprocesses of pid=1022579
[2025-11-27 14:06:08] 2025-11-27 19:05:35,016 | INFO     | process IDs to be killed: [1022579] (in reverse order)
[2025-11-27 14:06:08] 2025-11-27 19:05:35,342 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:06:08] 2025-11-27 19:05:35,344 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:06:08] 2025-11-27 19:05:35,366 | INFO     | did not find any defunct processes belonging to 1022579
[2025-11-27 14:06:08] 2025-11-27 19:05:35,389 | INFO     | did not find any defunct processes belonging to 1022579
[2025-11-27 14:06:08] 2025-11-27 19:05:35,390 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:06:08] 2025-11-27 19:05:35,390 | INFO     | ready for new job
[2025-11-27 14:06:08] 2025-11-27 19:05:35,391 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:06:08] 2025-11-27 19:05:35,400 | INFO     | ***************************************
[2025-11-27 14:06:08] 2025-11-27 19:05:35,400 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:06:08] 2025-11-27 19:05:35,400 | INFO     | ***************************************
[2025-11-27 14:06:08] 2025-11-27 19:05:35,400 | INFO     | 
[2025-11-27 14:06:08] 2025-11-27 19:05:35,405 | INFO     | architecture information:
[2025-11-27 14:06:08] 2025-11-27 19:05:35,406 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:06:08] 2025-11-27 19:05:35,426 | INFO     | cat /etc/os-release:
[2025-11-27 14:06:08] NAME="CentOS Linux"
[2025-11-27 14:06:08] VERSION="7 (Core)"
[2025-11-27 14:06:08] ID="centos"
[2025-11-27 14:06:08] ID_LIKE="rhel fedora"
[2025-11-27 14:06:08] VERSION_ID="7"
[2025-11-27 14:06:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:06:08] ANSI_COLOR="0;31"
[2025-11-27 14:06:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:06:08] HOME_URL="https://www.centos.org/"
[2025-11-27 14:06:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:06:08] 
[2025-11-27 14:06:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:06:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:06:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:06:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:06:08] 
[2025-11-27 14:06:08] 2025-11-27 19:05:35,426 | INFO     | ***************************************
[2025-11-27 14:06:08] 2025-11-27 19:05:35,930 | INFO     | executing command: df -mP /tmp/boinchome/slots/10
[2025-11-27 14:06:08] 2025-11-27 19:05:36,033 | INFO     | sufficient remaining disk space (87478501376 B)
[2025-11-27 14:06:08] 2025-11-27 19:05:36,034 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:06:08] 2025-11-27 19:05:36,034 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:06:08] 2025-11-27 19:05:36,034 | INFO     | update_server=False
[2025-11-27 14:06:08] 2025-11-27 19:05:36,034 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:06:08] 2025-11-27 19:05:36,035 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:06:08] 2025-11-27 19:05:36,035 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:06:08] 2025-11-27 19:05:36,276 | INFO     | all payload control threads have been joined
[2025-11-27 14:06:08] 2025-11-27 19:05:36,305 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:06:08] 2025-11-27 19:05:36,305 | INFO     | aborting loop
[2025-11-27 14:06:08] 2025-11-27 19:05:36,980 | INFO     | all data control threads have been joined
[2025-11-27 14:06:08] 2025-11-27 19:05:37,039 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:37,282 | INFO     | [payload] control thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:37,307 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:37,311 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:37,325 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:06:08] 2025-11-27 19:05:37,355 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:37,381 | INFO     | all job control threads have been joined
[2025-11-27 14:06:08] 2025-11-27 19:05:37,495 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:37,495 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:37,575 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:37,674 | INFO     | [job] validate thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:37,988 | INFO     | [data] control thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:37,992 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:38,042 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:38,334 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:38,389 | INFO     | [job] control thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:38,471 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:40,044 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:06:08] 2025-11-27 19:05:53,284 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:06:08] 2025-11-27 19:05:54,712 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140127095977792)>', '<ExcThread(monitor, started 140126319535872)>']
[2025-11-27 14:06:08] 2025-11-27 19:05:59,738 | INFO     | all workflow threads have been joined
[2025-11-27 14:06:08] 2025-11-27 19:05:59,738 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:06:08] 2025-11-27 19:05:59,738 | INFO     | traces error code: 0
[2025-11-27 14:06:08] 2025-11-27 19:05:59,739 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:06:08] 2025-11-27 19:06:06,506 | INFO     | PID=1006623 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:06:08] 2025-11-27 19:06:06,507 | INFO     | .. there are 46 such processes running
[2025-11-27 14:06:08] 2025-11-27 19:06:06,507 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:06:08] 2025-11-27 19:06:06,507 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:06:08] 2025-11-27 19:06:06,507 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:06:08] 2025-11-27 19:06:06,507 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:06:08] 2025-11-27 19:06:06,507 | INFO     | [monitor] control thread has ended
[2025-11-27 14:06:08] 2025-11-27 19:06:06,816 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:06:08] 2025-11-27 19:06:06,847 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:06:08] 2025-11-27 19:06:06,872 [wrapper] pilotpid: 1006623
[2025-11-27 14:06:08] 2025-11-27 19:06:06,912 [wrapper] Pilot exit status: 0
[2025-11-27 14:06:08] 2025-11-27 19:06:07,029 [wrapper] pandaids: 6891071872
[2025-11-27 14:06:08] 2025-11-27 19:06:07,478 [wrapper] cleanup supervisor_pilot 1966829 1006624
[2025-11-27 14:06:08] 2025-11-27 19:06:07,510 [wrapper] Test setup, not cleaning
[2025-11-27 14:06:08] 2025-11-27 19:06:07,524 [wrapper] apfmon messages muted
[2025-11-27 14:06:08] 2025-11-27 19:06:07,528 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:06:08] 2025-11-27 19:06:07,532 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:06:08]  *** Error codes and diagnostics ***
[2025-11-27 14:06:08]     "exeErrorCode": 0,
[2025-11-27 14:06:08]     "exeErrorDiag": "",
[2025-11-27 14:06:08]     "pilotErrorCode": 0,
[2025-11-27 14:06:08]     "pilotErrorDiag": "",
[2025-11-27 14:06:08]  *** Listing of results directory ***
[2025-11-27 14:06:08] total 1322936
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 00:55 pilot3.tar.gz
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 00:59 queuedata.json
[2025-11-27 14:06:08] -rwx------. 1 boincer umatlas     36292 Nov 18 01:00 runpilot2-wrapper.sh
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:11 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:06:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:11 run_atlas
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:11 job.xml
[2025-11-27 14:06:08] -rw-r--r--. 2 boincer umatlas 410273248 Nov 26 00:11 EVNT.47483658._000167.pool.root.1
[2025-11-27 14:06:08] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:11 start_atlas.sh
[2025-11-27 14:06:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:11 shared
[2025-11-27 14:06:08] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 00:11 input.tar.gz
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:11 boinc_lockfile
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:11 pandaJob.out
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas    991877 Nov 26 00:12 agis_schedconf.cvmfs.json
[2025-11-27 14:06:08] drwx------. 5 boincer umatlas      4096 Nov 26 00:12 pilot3
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:26 boinc_task_state.xml
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas      6881 Nov 27 14:02 init_data.xml
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas 902050444 Nov 27 14:03 HITS.47483661._001669.pool.root.1
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas      1059 Nov 27 14:04 memory_monitor_summary.json
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:04 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas   2992632 Nov 27 14:05 log.47483661._001669.job.log.tgz.1
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas        95 Nov 27 14:05 pilot_heartbeat.json
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas      8629 Nov 27 14:05 heartbeat.json
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas       823 Nov 27 14:06 pilotlog.txt
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:06 boinc_mmap_file
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:06 wrapper_checkpoint.txt
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas  16230449 Nov 27 14:06 log.47483661._001669.job.log.1
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas       353 Nov 27 14:06 output.list
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:06 runtime_log
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas  19240960 Nov 27 14:06 result.tar.gz
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas       665 Nov 27 14:06 tQdKDmswTf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmFKKODm13EvYn.diag
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas      8729 Nov 27 14:06 runtime_log.err
[2025-11-27 14:06:08] -rw-r--r--. 1 boincer umatlas     21913 Nov 27 14:06 stderr.txt
[2025-11-27 14:06:08] HITS file was successfully produced:
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas 902050444 Nov 27 14:03 shared/HITS.pool.root.1
[2025-11-27 14:06:08]  *** Contents of shared directory: ***
[2025-11-27 14:06:08] total 1300968
[2025-11-27 14:06:08] -rw-r--r--. 2 boincer umatlas 410273248 Nov 26 00:11 ATLAS.root_0
[2025-11-27 14:06:08] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:11 start_atlas.sh
[2025-11-27 14:06:08] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 00:11 input.tar.gz
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas 902050444 Nov 27 14:03 HITS.pool.root.1
[2025-11-27 14:06:08] -rw-------. 1 boincer umatlas  19240960 Nov 27 14:06 result.tar.gz
14:06:09 (1000652): run_atlas exited; CPU time 273660.969888
14:06:09 (1000652): called boinc_finish(0)

</stderr_txt>
]]>

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