Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:53:12 (4177699): wrapper (7.7.26015): starting
23:53:12 (4177699): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:53:12] Arguments: --nthreads 8
[2025-11-25 23:53:12] Threads: 8
[2025-11-25 23:53:12] Checking for CVMFS
[2025-11-25 23:53:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:53:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:53:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:53:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:53:12] 2.13.3.0 11460 29596 239284 153309 1 374 27350089 32935937 52684 16776704 0 379367781 99.723 258304082 35447 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 23:53:12] CVMFS is ok
[2025-11-25 23:53:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:53:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:53:12] Further information can be found at the LHC@home message board.
[2025-11-25 23:53:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:53:12] Checking for apptainer binary...
[2025-11-25 23:53:12] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:53:12] Running /usr/bin/apptainer --version
[2025-11-25 23:53:12] apptainer version 1.4.4-1.el9
[2025-11-25 23:53:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:53:13] c7-3-34.aglt2.org
[2025-11-25 23:53:13] apptainer works
[2025-11-25 23:53:13] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:53:13] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:53:13] Starting ATLAS job with PandaID=6896044054
[2025-11-25 23:53:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:20:15 (4177699): BOINC client no longer exists - exiting
08:20:15 (4177699): timer handler: client dead, exiting
08:30:12 (3841821): wrapper (7.7.26015): starting
08:30:12 (3841821): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 08:30:12] Arguments: --nthreads 8
[2025-11-26 08:30:12] Threads: 8
[2025-11-26 08:30:12] This job has been restarted, cleaning up previous attempt
[2025-11-26 08:30:13] Checking for CVMFS
[2025-11-26 08:30:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 08:30:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 08:30:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 08:30:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 08:30:13] 2.13.3.0 11460 30113 256096 153323 1 739 18791332 32935936 44775 16776704 0 385232253 99.725 260340754 35396 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 08:30:13] CVMFS is ok
[2025-11-26 08:30:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 08:30:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 08:30:13] Further information can be found at the LHC@home message board.
[2025-11-26 08:30:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 08:30:13] Checking for apptainer binary...
[2025-11-26 08:30:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 08:30:13] Running /usr/bin/apptainer --version
[2025-11-26 08:30:13] apptainer version 1.4.4-1.el9
[2025-11-26 08:30:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 08:30:13] c7-3-34.aglt2.org
[2025-11-26 08:30:13] apptainer works
[2025-11-26 08:30:13] Set ATHENA_PROC_NUMBER=8
[2025-11-26 08:30:13] Set ATHENA_CORE_NUMBER=8
[2025-11-26 08:30:13] Starting ATLAS job with PandaID=6896044054
[2025-11-26 08:30:13] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:45:41]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:45:41] 2025-11-27 00:44:34,181 | INFO     | time since job start (40450s) is within the limit (172800.0s)
[2025-11-26 19:45:41] 2025-11-27 00:44:35,261 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 19:45:41] 2025-11-27 00:44:35,294 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3137.318760416667
[2025-11-26 19:45:41] 2025-11-27 00:44:35,308 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6896044054/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:45:41] 2025-11-27 00:44:35,309 | INFO     | extracted standard info from prmon json
[2025-11-26 19:45:41] 2025-11-27 00:44:35,309 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:45:41] 2025-11-27 00:44:35,309 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:45:41] 2025-11-27 00:44:35,317 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:45:41] 2025-11-27 00:44:35,318 | INFO     | sum of square deviations: 90369667789.74026
[2025-11-26 19:45:41] 2025-11-27 00:44:35,331 | INFO     | sum of deviations: 686460611296.6688
[2025-11-26 19:45:41] 2025-11-27 00:44:35,331 | INFO     | mean x: 1764184042.8295627
[2025-11-26 19:45:41] 2025-11-27 00:44:35,332 | INFO     | mean y: 2987884.2006033184
[2025-11-26 19:45:41] 2025-11-27 00:44:35,332 | INFO     | intersect: -13398000368.830254
[2025-11-26 19:45:41] 2025-11-27 00:44:35,332 | INFO     | chi2: 6.759089795618582
[2025-11-26 19:45:41] 2025-11-27 00:44:35,333 | INFO     | sum of square deviations: 88340671908.77357
[2025-11-26 19:45:41] 2025-11-27 00:44:35,346 | INFO     | sum of deviations: 934448419573.5219
[2025-11-26 19:45:41] 2025-11-27 00:44:35,346 | INFO     | mean x: 1764183890.3358662
[2025-11-26 19:45:41] 2025-11-27 00:44:35,346 | INFO     | mean y: 3006522.287234043
[2025-11-26 19:45:41] 2025-11-27 00:44:35,347 | INFO     | intersect: -18658147083.877407
[2025-11-26 19:45:41] 2025-11-27 00:44:35,347 | INFO     | chi2: 3.1372560919768264
[2025-11-26 19:45:41] 2025-11-27 00:44:35,347 | INFO     | current chi2=3.1372560919768264 (change=53.58463658804359 %)
[2025-11-26 19:45:41] 2025-11-27 00:44:35,348 | INFO     | sum of square deviations: 86342281252.75351
[2025-11-26 19:45:41] 2025-11-27 00:44:35,364 | INFO     | sum of deviations: 1060045502138.8562
[2025-11-26 19:45:41] 2025-11-27 00:44:35,364 | INFO     | mean x: 1764183737.8422666
[2025-11-26 19:45:41] 2025-11-27 00:44:35,364 | INFO     | mean y: 3016084.8529862175
[2025-11-26 19:45:41] 2025-11-27 00:44:35,365 | INFO     | intersect: -21656303186.220486
[2025-11-26 19:45:41] 2025-11-27 00:44:35,365 | INFO     | chi2: 1.8542552713621967
[2025-11-26 19:45:41] 2025-11-27 00:44:35,369 | INFO     | current chi2=1.8542552713621967 (change=40.89563564465641 %)
[2025-11-26 19:45:41] 2025-11-27 00:44:35,370 | INFO     | sum of square deviations: 84374144128.25787
[2025-11-26 19:45:41] 2025-11-27 00:44:35,386 | INFO     | sum of deviations: 1043551859504.0862
[2025-11-26 19:45:41] 2025-11-27 00:44:35,386 | INFO     | mean x: 1764183585.3441358
[2025-11-26 19:45:41] 2025-11-27 00:44:35,386 | INFO     | mean y: 3014806.654320988
[2025-11-26 19:45:41] 2025-11-27 00:44:35,386 | INFO     | intersect: -21816667988.51469
[2025-11-26 19:45:41] 2025-11-27 00:44:35,387 | INFO     | chi2: 1.851881651545044
[2025-11-26 19:45:41] 2025-11-27 00:44:35,387 | INFO     | current chi2=1.851881651545044 (change=0.12800933365603612 %)
[2025-11-26 19:45:41] 2025-11-27 00:44:35,387 | INFO     | right removable region: 647
[2025-11-26 19:45:41] 2025-11-27 00:44:35,388 | INFO     | sum of square deviations: 88340336408.77357
[2025-11-26 19:45:41] 2025-11-27 00:44:35,404 | INFO     | sum of deviations: 541846639572.0105
[2025-11-26 19:45:41] 2025-11-27 00:44:35,405 | INFO     | mean x: 1764184195.3358662
[2025-11-26 19:45:41] 2025-11-27 00:44:35,405 | INFO     | mean y: 2998724.3936170214
[2025-11-26 19:45:41] 2025-11-27 00:44:35,405 | INFO     | intersect: -10817848429.793278
[2025-11-26 19:45:41] 2025-11-27 00:44:35,409 | INFO     | chi2: 5.225705794726303
[2025-11-26 19:45:41] 2025-11-27 00:44:35,410 | INFO     | current chi2=5.225705794726303 (change=22.686249883619812 %)
[2025-11-26 19:45:41] 2025-11-27 00:44:35,410 | INFO     | left removable region: 10
[2025-11-26 19:45:41] 2025-11-27 00:44:35,410 | INFO     | sum of square deviations: 80149718626.83255
[2025-11-26 19:45:41] 2025-11-27 00:44:35,426 | INFO     | sum of deviations: 841460235133.1136
[2025-11-26 19:45:41] 2025-11-27 00:44:35,426 | INFO     | mean x: 1764183859.8508635
[2025-11-26 19:45:41] 2025-11-27 00:44:35,430 | INFO     | mean y: 3030272.885400314
[2025-11-26 19:45:41] 2025-11-27 00:44:35,430 | INFO     | intersect: -18518439184.041344
[2025-11-26 19:45:41] 2025-11-27 00:44:35,431 | INFO     | chi2: 0.21116043921318042
[2025-11-26 19:45:41] 2025-11-27 00:44:35,431 | INFO     | current memory leak: 10.50 B/s (using 637 data points, chi2=0.21)
[2025-11-26 19:45:41] 2025-11-27 00:44:35,432 | INFO     | could have reported an average CPU frequency of 3195 MHz (26 samples)
[2025-11-26 19:45:41] 2025-11-27 00:44:35,432 | INFO     | ..............................
[2025-11-26 19:45:41] 2025-11-27 00:44:35,432 | INFO     | . Timing measurements:
[2025-11-26 19:45:41] 2025-11-27 00:44:35,432 | INFO     | . get job = 0 s
[2025-11-26 19:45:41] 2025-11-27 00:44:35,432 | INFO     | . initial setup = 2 s
[2025-11-26 19:45:41] 2025-11-27 00:44:35,432 | INFO     | . payload setup = 5 s
[2025-11-26 19:45:41] 2025-11-27 00:44:35,432 | INFO     | . stage-in = 0 s
[2025-11-26 19:45:41] 2025-11-27 00:44:35,432 | INFO     | . payload execution = 40405 s
[2025-11-26 19:45:41] 2025-11-27 00:44:35,433 | INFO     | . stage-out = 3 s
[2025-11-26 19:45:41] 2025-11-27 00:44:35,433 | INFO     | . log creation = 0 s
[2025-11-26 19:45:41] 2025-11-27 00:44:35,433 | INFO     | ..............................
[2025-11-26 19:45:41] 2025-11-27 00:44:35,571 | INFO     | 
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | job summary report
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | --------------------------------------------------
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | PanDA job id: 6896044054
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | task id: 47556173
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | errors: (none)
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | pilot state: finished 
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | transexitcode: 0
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | exeerrorcode: 0
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | exeerrordiag: 
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | exitcode: 0
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | exitmsg: OK
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | cpuconsumptiontime: 199775 s
[2025-11-26 19:45:41] 2025-11-27 00:44:35,572 | INFO     | nevents: 1000
[2025-11-26 19:45:41] 2025-11-27 00:44:35,573 | INFO     | neventsw: 0
[2025-11-26 19:45:41] 2025-11-27 00:44:35,573 | INFO     | pid: 3921005
[2025-11-26 19:45:41] 2025-11-27 00:44:35,573 | INFO     | pgrp: 3921005
[2025-11-26 19:45:41] 2025-11-27 00:44:35,573 | INFO     | corecount: 8
[2025-11-26 19:45:41] 2025-11-27 00:44:35,573 | INFO     | event service: False
[2025-11-26 19:45:41] 2025-11-27 00:44:35,573 | INFO     | sizes: {0: 2284310, 4: 2284572, 11: 2284600, 40415: 2329673, 40420: 2338667, 40421: 2338723, 40435: 2339097}
[2025-11-26 19:45:41] 2025-11-27 00:44:35,573 | INFO     | --------------------------------------------------
[2025-11-26 19:45:41] 2025-11-27 00:44:35,573 | INFO     | 
[2025-11-26 19:45:41] 2025-11-27 00:44:35,573 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 19:45:41] 2025-11-27 00:44:35,670 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,670 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,670 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,670 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,670 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,670 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,670 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,671 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,671 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,671 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,671 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,672 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,672 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,672 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,672 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,672 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:45:41] 2025-11-27 00:44:35,672 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,672 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:45:41] 2025-11-27 00:44:35,679 | INFO     | job 6896044054 has completed (purged errors)
[2025-11-26 19:45:41] 2025-11-27 00:44:35,679 | INFO     | overall cleanup function is called
[2025-11-26 19:45:41] 2025-11-27 00:44:36,706 | INFO     | --- collectZombieJob: --- 10, [3921005]
[2025-11-26 19:45:41] 2025-11-27 00:44:36,706 | INFO     | zombie collector waiting for pid 3921005
[2025-11-26 19:45:41] 2025-11-27 00:44:36,707 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:45:41] 2025-11-27 00:44:36,707 | INFO     | collected zombie processes
[2025-11-26 19:45:41] 2025-11-27 00:44:36,707 | INFO     | will attempt to kill all subprocesses of pid=3921005
[2025-11-26 19:45:41] 2025-11-27 00:44:38,232 | INFO     | process IDs to be killed: [3921005] (in reverse order)
[2025-11-26 19:45:41] 2025-11-27 00:44:38,596 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:45:41] 2025-11-27 00:44:38,596 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:45:41] 2025-11-27 00:44:38,663 | INFO     | did not find any defunct processes belonging to 3921005
[2025-11-26 19:45:41] 2025-11-27 00:44:38,693 | INFO     | did not find any defunct processes belonging to 3921005
[2025-11-26 19:45:41] 2025-11-27 00:44:38,696 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:45:41] 2025-11-27 00:44:38,696 | INFO     | ready for new job
[2025-11-26 19:45:41] 2025-11-27 00:44:38,696 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:45:41] 2025-11-27 00:44:38,704 | INFO     | ***************************************
[2025-11-26 19:45:41] 2025-11-27 00:44:38,704 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:45:41] 2025-11-27 00:44:38,704 | INFO     | ***************************************
[2025-11-26 19:45:41] 2025-11-27 00:44:38,705 | INFO     | 
[2025-11-26 19:45:41] 2025-11-27 00:44:38,713 | INFO     | architecture information:
[2025-11-26 19:45:41] 2025-11-27 00:44:38,720 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:45:41] 2025-11-27 00:44:38,799 | INFO     | cat /etc/os-release:
[2025-11-26 19:45:41] NAME="CentOS Linux"
[2025-11-26 19:45:41] VERSION="7 (Core)"
[2025-11-26 19:45:41] ID="centos"
[2025-11-26 19:45:41] ID_LIKE="rhel fedora"
[2025-11-26 19:45:41] VERSION_ID="7"
[2025-11-26 19:45:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:45:41] ANSI_COLOR="0;31"
[2025-11-26 19:45:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:45:41] HOME_URL="https://www.centos.org/"
[2025-11-26 19:45:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:45:41] 
[2025-11-26 19:45:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:45:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:45:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:45:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:45:41] 
[2025-11-26 19:45:41] 2025-11-27 00:44:38,799 | INFO     | ***************************************
[2025-11-26 19:45:41] 2025-11-27 00:44:39,303 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 19:45:41] 2025-11-27 00:44:39,365 | INFO     | sufficient remaining disk space (68308434944 B)
[2025-11-26 19:45:41] 2025-11-27 00:44:39,365 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:45:41] 2025-11-27 00:44:39,365 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:45:41] 2025-11-27 00:44:39,365 | INFO     | update_server=False
[2025-11-26 19:45:41] 2025-11-27 00:44:39,365 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:45:41] 2025-11-27 00:44:39,533 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:45:41] 2025-11-27 00:44:39,534 | INFO     | aborting loop
[2025-11-26 19:45:41] 2025-11-27 00:44:39,847 | INFO     | all payload control threads have been joined
[2025-11-26 19:45:41] 2025-11-27 00:44:40,051 | INFO     | all data control threads have been joined
[2025-11-26 19:45:41] 2025-11-27 00:44:40,371 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:40,478 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:45:41] 2025-11-27 00:44:40,539 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:40,597 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:40,606 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:45:41] 2025-11-27 00:44:40,766 | INFO     | all job control threads have been joined
[2025-11-26 19:45:41] 2025-11-27 00:44:40,842 | INFO     | [job] validate thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:40,852 | INFO     | [payload] control thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:40,984 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:45:41] 2025-11-27 00:44:41,059 | INFO     | [data] control thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:41,393 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:41,484 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:41,612 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:41,726 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:41,752 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:41,771 | INFO     | [job] control thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:41,854 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:42,485 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:44,995 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:44:49,547 | INFO     | job.realtimelogging is not enabled
[2025-11-26 19:45:41] 2025-11-27 00:44:50,556 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:45:41] 2025-11-27 00:45:08,500 | INFO     | PID=3872271 has CPU usage=4.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:45:41] 2025-11-27 00:45:08,504 | INFO     | .. there are 78 such processes running
[2025-11-26 19:45:41] 2025-11-27 00:45:08,504 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:45:41] 2025-11-27 00:45:08,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:45:41] 2025-11-27 00:45:08,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:45:41] 2025-11-27 00:45:24,483 [wrapper] supervise_pilot (15 min periods counter: 46)
[2025-11-26 19:45:41] 2025-11-27 00:45:33,600 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:45:41] 2025-11-27 00:45:35,260 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140595457673024)>', '<ExcThread(monitor, started 140594739406592)>']
[2025-11-26 19:45:41] 2025-11-27 00:45:35,699 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:45:41] 2025-11-27 00:45:35,701 | INFO     | [monitor] control thread has ended
[2025-11-26 19:45:41] 2025-11-27 00:45:40,286 | INFO     | all workflow threads have been joined
[2025-11-26 19:45:41] 2025-11-27 00:45:40,287 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:45:41] 2025-11-27 00:45:40,287 | INFO     | traces error code: 0
[2025-11-26 19:45:41] 2025-11-27 00:45:40,287 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:45:41] 2025-11-27 00:45:40,706 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:45:41] 2025-11-27 00:45:40,719 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:45:41] 2025-11-27 00:45:40,722 [wrapper] pilotpid: 3872271
[2025-11-26 19:45:41] 2025-11-27 00:45:40,728 [wrapper] Pilot exit status: 0
[2025-11-26 19:45:41] 2025-11-27 00:45:40,797 [wrapper] pandaids: 6896044054 6896044054
[2025-11-26 19:45:41] 2025-11-27 00:45:41,001 [wrapper] cleanup supervisor_pilot 1616986 3872272
[2025-11-26 19:45:41] 2025-11-27 00:45:41,004 [wrapper] Test setup, not cleaning
[2025-11-26 19:45:41] 2025-11-27 00:45:41,008 [wrapper] apfmon messages muted
[2025-11-26 19:45:41] 2025-11-27 00:45:41,012 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:45:41] 2025-11-27 00:45:41,020 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:45:41]  *** Error codes and diagnostics ***
[2025-11-26 19:45:41]     "exeErrorCode": 0,
[2025-11-26 19:45:41]     "exeErrorDiag": "",
[2025-11-26 19:45:41]     "pilotErrorCode": 0,
[2025-11-26 19:45:41]     "pilotErrorDiag": "",
[2025-11-26 19:45:41]  *** Listing of results directory ***
[2025-11-26 19:45:41] total 1710796
[2025-11-26 19:45:41] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 12:43 queuedata.json
[2025-11-26 19:45:41] -rwx------. 1 boincer umatlas     36292 Nov 24 12:44 runpilot2-wrapper.sh
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas       100 Nov 25 23:53 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:45:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 23:53 run_atlas
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas       105 Nov 25 23:53 job.xml
[2025-11-26 19:45:41] -rw-r--r--. 3 boincer umatlas 409600957 Nov 25 23:53 EVNT.47483658._003022.pool.root.1
[2025-11-26 19:45:41] -rw-r--r--. 3 boincer umatlas 409600957 Nov 25 23:53 ATLAS.root_0
[2025-11-26 19:45:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 23:53 start_atlas.sh
[2025-11-26 19:45:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 23:53 shared
[2025-11-26 19:45:41] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 23:53 input.tar.gz
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas         0 Nov 25 23:53 boinc_lockfile
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 08:30 pandaJob.out
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas        57 Nov 26 08:30 setup.sh.local
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas    991830 Nov 26 08:30 agis_schedconf.cvmfs.json
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas       532 Nov 26 19:33 boinc_task_state.xml
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas      6947 Nov 26 19:36 init_data.xml
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas 914123685 Nov 26 19:43 HITS.47556173._000048.pool.root.1
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas      1075 Nov 26 19:44 memory_monitor_summary.json
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:44 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas   1912458 Nov 26 19:44 log.47556173._000048.job.log.tgz.1
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas        96 Nov 26 19:44 pilot_heartbeat.json
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas      8633 Nov 26 19:44 heartbeat.json
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas        29 Nov 26 19:45 wrapper_checkpoint.txt
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:45 boinc_mmap_file
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas      4896 Nov 26 19:45 pilotlog.txt
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas   5385682 Nov 26 19:45 log.47556173._000048.job.log.1
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas       353 Nov 26 19:45 output.list
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:45 runtime_log
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas   7321600 Nov 26 19:45 result.tar.gz
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas      9423 Nov 26 19:45 runtime_log.err
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas       790 Nov 26 19:45 6CHNDmFnph8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmJ9IKDmltH0Vo.diag
[2025-11-26 19:45:41] -rw-r--r--. 1 boincer umatlas     23552 Nov 26 19:45 stderr.txt
[2025-11-26 19:45:41] HITS file was successfully produced:
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas 914123685 Nov 26 19:43 shared/HITS.pool.root.1
[2025-11-26 19:45:41]  *** Contents of shared directory: ***
[2025-11-26 19:45:41] total 1300460
[2025-11-26 19:45:41] -rw-r--r--. 3 boincer umatlas 409600957 Nov 25 23:53 ATLAS.root_0
[2025-11-26 19:45:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 23:53 start_atlas.sh
[2025-11-26 19:45:41] -rw-r--r--. 2 boincer umatlas    590103 Nov 25 23:53 input.tar.gz
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas 914123685 Nov 26 19:43 HITS.pool.root.1
[2025-11-26 19:45:41] -rw-------. 1 boincer umatlas   7321600 Nov 26 19:45 result.tar.gz
19:45:42 (3841821): run_atlas exited; CPU time 200497.645858
19:45:42 (3841821): called boinc_finish(0)

</stderr_txt>
]]>

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