Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:10:34 (389035): wrapper (7.7.26015): starting
00:10:34 (389035): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:10:34] Arguments: --nthreads 8
[2025-11-26 00:10:34] Threads: 8
[2025-11-26 00:10:34] Checking for CVMFS
[2025-11-26 00:10:34] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:10:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:10:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:10:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:10:36] 2.13.3.0 10982 29613 348032 153309 1 359 32478636 40960000 27642 16776704 0 147603927 99.694 117954675 39289 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:10:36] CVMFS is ok
[2025-11-26 00:10:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:10:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:10:36] Further information can be found at the LHC@home message board.
[2025-11-26 00:10:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:10:36] Checking for apptainer binary...
[2025-11-26 00:10:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:10:36] Running /usr/bin/apptainer --version
[2025-11-26 00:10:36] apptainer version 1.4.4-1.el9
[2025-11-26 00:10:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:10:37] c6-8-12-3.aglt2.org
[2025-11-26 00:10:37] apptainer works
[2025-11-26 00:10:37] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:10:37] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:10:37] Starting ATLAS job with PandaID=6896713870
[2025-11-26 00:10:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/6 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 12:16:01]  *** The last 200 lines of the pilot log: ***
[2025-11-26 12:16:01] 2025-11-26 17:15:10,950 | INFO     | .. there are 37 such processes running
[2025-11-26 12:16:01] 2025-11-26 17:15:11,192 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 12:16:01] 2025-11-26 17:15:11,195 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3081.801017857142
[2025-11-26 12:16:01] 2025-11-26 17:15:11,205 | INFO     | using path: /tmp/boinchome/slots/6/PanDA_Pilot-6896713870/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 12:16:01] 2025-11-26 17:15:11,205 | INFO     | extracted standard info from prmon json
[2025-11-26 12:16:01] 2025-11-26 17:15:11,206 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 12:16:01] 2025-11-26 17:15:11,206 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 12:16:01] 2025-11-26 17:15:11,218 | INFO     | fitting pss+swap vs Time
[2025-11-26 12:16:01] 2025-11-26 17:15:11,220 | INFO     | sum of square deviations: 110515039668.69658
[2025-11-26 12:16:01] 2025-11-26 17:15:11,233 | INFO     | sum of deviations: 1281015744114.8923
[2025-11-26 12:16:01] 2025-11-26 17:15:11,233 | INFO     | mean x: 1764155647.6220028
[2025-11-26 12:16:01] 2025-11-26 17:15:11,233 | INFO     | mean y: 2828978.596614951
[2025-11-26 12:16:01] 2025-11-26 17:15:11,233 | INFO     | intersect: -20446072514.33847
[2025-11-26 12:16:01] 2025-11-26 17:15:11,234 | INFO     | chi2: 12.04024878327265
[2025-11-26 12:16:01] 2025-11-26 17:15:11,235 | INFO     | sum of square deviations: 108193530641.74852
[2025-11-26 12:16:01] 2025-11-26 17:15:11,243 | INFO     | sum of deviations: 1485420501838.0425
[2025-11-26 12:16:01] 2025-11-26 17:15:11,244 | INFO     | mean x: 1764155495.1264205
[2025-11-26 12:16:01] 2025-11-26 17:15:11,244 | INFO     | mean y: 2842398.5838068184
[2025-11-26 12:16:01] 2025-11-26 17:15:11,244 | INFO     | intersect: -24217762339.49518
[2025-11-26 12:16:01] 2025-11-26 17:15:11,245 | INFO     | chi2: 9.504013820960811
[2025-11-26 12:16:01] 2025-11-26 17:15:11,245 | INFO     | current chi2=9.504013820960811 (change=21.064639177849838 %)
[2025-11-26 12:16:01] 2025-11-26 17:15:11,245 | INFO     | right removable region: 703
[2025-11-26 12:16:01] 2025-11-26 17:15:11,246 | INFO     | sum of square deviations: 108193261631.74864
[2025-11-26 12:16:01] 2025-11-26 17:15:11,254 | INFO     | sum of deviations: 1008031580902.2283
[2025-11-26 12:16:01] 2025-11-26 17:15:11,254 | INFO     | mean x: 1764155800.1264205
[2025-11-26 12:16:01] 2025-11-26 17:15:11,255 | INFO     | mean y: 2846903.8963068184
[2025-11-26 12:16:01] 2025-11-26 17:15:11,255 | INFO     | intersect: -16433710542.833193
[2025-11-26 12:16:01] 2025-11-26 17:15:11,255 | INFO     | chi2: 7.975077247601906
[2025-11-26 12:16:01] 2025-11-26 17:15:11,255 | INFO     | current chi2=7.975077247601906 (change=33.763185535820746 %)
[2025-11-26 12:16:01] 2025-11-26 17:15:11,256 | INFO     | sum of square deviations: 105904228394.77101
[2025-11-26 12:16:01] 2025-11-26 17:15:11,261 | INFO     | sum of deviations: 779115278009.2878
[2025-11-26 12:16:01] 2025-11-26 17:15:11,261 | INFO     | mean x: 1764155952.6309013
[2025-11-26 12:16:01] 2025-11-26 17:15:11,261 | INFO     | mean y: 2862151.051502146
[2025-11-26 12:16:01] 2025-11-26 17:15:11,261 | INFO     | intersect: -12975664545.372917
[2025-11-26 12:16:01] 2025-11-26 17:15:11,261 | INFO     | chi2: 5.235596460829066
[2025-11-26 12:16:01] 2025-11-26 17:15:11,261 | INFO     | current chi2=5.235596460829066 (change=34.350523533757595 %)
[2025-11-26 12:16:01] 2025-11-26 17:15:11,262 | INFO     | sum of square deviations: 103647749790.53741
[2025-11-26 12:16:01] 2025-11-26 17:15:11,270 | INFO     | sum of deviations: 641451916307.491
[2025-11-26 12:16:01] 2025-11-26 17:15:11,271 | INFO     | mean x: 1764156105.1340058
[2025-11-26 12:16:01] 2025-11-26 17:15:11,271 | INFO     | mean y: 2871445.521613833
[2025-11-26 12:16:01] 2025-11-26 17:15:11,271 | INFO     | intersect: -10915082070.986658
[2025-11-26 12:16:01] 2025-11-26 17:15:11,272 | INFO     | chi2: 4.275789078858248
[2025-11-26 12:16:01] 2025-11-26 17:15:11,272 | INFO     | current chi2=4.275789078858248 (change=18.3323407209048 %)
[2025-11-26 12:16:01] 2025-11-26 17:15:11,272 | INFO     | left removable region: 30
[2025-11-26 12:16:01] 2025-11-26 17:15:11,273 | INFO     | sum of square deviations: 94520892471.25996
[2025-11-26 12:16:01] 2025-11-26 17:15:11,281 | INFO     | sum of deviations: 746531519917.4752
[2025-11-26 12:16:01] 2025-11-26 17:15:11,281 | INFO     | mean x: 1764156379.63893
[2025-11-26 12:16:01] 2025-11-26 17:15:11,281 | INFO     | mean y: 2895788.882615156
[2025-11-26 12:16:01] 2025-11-26 17:15:11,281 | INFO     | intersect: -13930514159.23449
[2025-11-26 12:16:01] 2025-11-26 17:15:11,282 | INFO     | chi2: 1.39061426393549
[2025-11-26 12:16:01] 2025-11-26 17:15:11,282 | INFO     | current memory leak: 7.90 B/s (using 673 data points, chi2=1.39)
[2025-11-26 12:16:01] 2025-11-26 17:15:11,283 | INFO     | could have reported an average CPU frequency of 3105 MHz (27 samples)
[2025-11-26 12:16:01] 2025-11-26 17:15:11,283 | INFO     | ..............................
[2025-11-26 12:16:01] 2025-11-26 17:15:11,283 | INFO     | . Timing measurements:
[2025-11-26 12:16:01] 2025-11-26 17:15:11,283 | INFO     | . get job = 0 s
[2025-11-26 12:16:01] 2025-11-26 17:15:11,283 | INFO     | . initial setup = 4 s
[2025-11-26 12:16:01] 2025-11-26 17:15:11,284 | INFO     | . payload setup = 43 s
[2025-11-26 12:16:01] 2025-11-26 17:15:11,284 | INFO     | . stage-in = 0 s
[2025-11-26 12:16:01] 2025-11-26 17:15:11,284 | INFO     | . payload execution = 43271 s
[2025-11-26 12:16:01] 2025-11-26 17:15:11,284 | INFO     | . stage-out = 3 s
[2025-11-26 12:16:01] 2025-11-26 17:15:11,284 | INFO     | . log creation = 0 s
[2025-11-26 12:16:01] 2025-11-26 17:15:11,284 | INFO     | ..............................
[2025-11-26 12:16:01] 2025-11-26 17:15:11,368 | INFO     | 
[2025-11-26 12:16:01] 2025-11-26 17:15:11,371 | INFO     | job summary report
[2025-11-26 12:16:01] 2025-11-26 17:15:11,371 | INFO     | --------------------------------------------------
[2025-11-26 12:16:01] 2025-11-26 17:15:11,372 | INFO     | PanDA job id: 6896713870
[2025-11-26 12:16:01] 2025-11-26 17:15:11,376 | INFO     | task id: 47556161
[2025-11-26 12:16:01] 2025-11-26 17:15:11,376 | INFO     | errors: (none)
[2025-11-26 12:16:01] 2025-11-26 17:15:11,376 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 12:16:01] 2025-11-26 17:15:11,376 | INFO     | pilot state: finished 
[2025-11-26 12:16:01] 2025-11-26 17:15:11,376 | INFO     | transexitcode: 0
[2025-11-26 12:16:01] 2025-11-26 17:15:11,376 | INFO     | exeerrorcode: 0
[2025-11-26 12:16:01] 2025-11-26 17:15:11,377 | INFO     | exeerrordiag: 
[2025-11-26 12:16:01] 2025-11-26 17:15:11,377 | INFO     | exitcode: 0
[2025-11-26 12:16:01] 2025-11-26 17:15:11,377 | INFO     | exitmsg: OK
[2025-11-26 12:16:01] 2025-11-26 17:15:11,377 | INFO     | cpuconsumptiontime: 231277 s
[2025-11-26 12:16:01] 2025-11-26 17:15:11,377 | INFO     | nevents: 1000
[2025-11-26 12:16:01] 2025-11-26 17:15:11,377 | INFO     | neventsw: 0
[2025-11-26 12:16:01] 2025-11-26 17:15:11,377 | INFO     | pid: 402924
[2025-11-26 12:16:01] 2025-11-26 17:15:11,377 | INFO     | pgrp: 402924
[2025-11-26 12:16:01] 2025-11-26 17:15:11,378 | INFO     | corecount: 8
[2025-11-26 12:16:01] 2025-11-26 17:15:11,378 | INFO     | event service: False
[2025-11-26 12:16:01] 2025-11-26 17:15:11,378 | INFO     | sizes: {0: 2284042, 1: 2284241, 12: 2284241, 23: 2284269, 34: 2284297, 35: 2284587, 45: 2284743, 43319: 2330076, 43324: 2339070, 43326: 2339126, 43333: 2339372}
[2025-11-26 12:16:01] 2025-11-26 17:15:11,378 | INFO     | --------------------------------------------------
[2025-11-26 12:16:01] 2025-11-26 17:15:11,378 | INFO     | 
[2025-11-26 12:16:01] 2025-11-26 17:15:11,378 | INFO     | executing command: ls -lF /tmp/boinchome/slots/6
[2025-11-26 12:16:01] 2025-11-26 17:15:11,426 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,427 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,427 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,427 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,427 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,427 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,427 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,427 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,427 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,427 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,428 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,428 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,428 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,428 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,428 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,428 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,428 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,428 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 12:16:01] 2025-11-26 17:15:11,428 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,428 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 12:16:01] 2025-11-26 17:15:11,429 | INFO     | job 6896713870 has completed (purged errors)
[2025-11-26 12:16:01] 2025-11-26 17:15:11,429 | INFO     | overall cleanup function is called
[2025-11-26 12:16:01] 2025-11-26 17:15:12,469 | INFO     | --- collectZombieJob: --- 10, [402924]
[2025-11-26 12:16:01] 2025-11-26 17:15:12,469 | INFO     | zombie collector waiting for pid 402924
[2025-11-26 12:16:01] 2025-11-26 17:15:12,469 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 12:16:01] 2025-11-26 17:15:12,469 | INFO     | collected zombie processes
[2025-11-26 12:16:01] 2025-11-26 17:15:12,469 | INFO     | will attempt to kill all subprocesses of pid=402924
[2025-11-26 12:16:01] 2025-11-26 17:15:12,974 | INFO     | process IDs to be killed: [402924] (in reverse order)
[2025-11-26 12:16:01] 2025-11-26 17:15:13,122 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 12:16:01] 2025-11-26 17:15:13,123 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 12:16:01] 2025-11-26 17:15:13,139 | INFO     | did not find any defunct processes belonging to 402924
[2025-11-26 12:16:01] 2025-11-26 17:15:13,156 | INFO     | did not find any defunct processes belonging to 402924
[2025-11-26 12:16:01] 2025-11-26 17:15:13,157 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 12:16:01] 2025-11-26 17:15:13,158 | INFO     | ready for new job
[2025-11-26 12:16:01] 2025-11-26 17:15:13,158 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 12:16:01] 2025-11-26 17:15:13,162 | INFO     | ***************************************
[2025-11-26 12:16:01] 2025-11-26 17:15:13,162 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 12:16:01] 2025-11-26 17:15:13,162 | INFO     | ***************************************
[2025-11-26 12:16:01] 2025-11-26 17:15:13,162 | INFO     | 
[2025-11-26 12:16:01] 2025-11-26 17:15:13,165 | INFO     | architecture information:
[2025-11-26 12:16:01] 2025-11-26 17:15:13,166 | INFO     | executing command: cat /etc/os-release
[2025-11-26 12:16:01] 2025-11-26 17:15:13,184 | INFO     | cat /etc/os-release:
[2025-11-26 12:16:01] NAME="CentOS Linux"
[2025-11-26 12:16:01] VERSION="7 (Core)"
[2025-11-26 12:16:01] ID="centos"
[2025-11-26 12:16:01] ID_LIKE="rhel fedora"
[2025-11-26 12:16:01] VERSION_ID="7"
[2025-11-26 12:16:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 12:16:01] ANSI_COLOR="0;31"
[2025-11-26 12:16:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 12:16:01] HOME_URL="https://www.centos.org/"
[2025-11-26 12:16:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 12:16:01] 
[2025-11-26 12:16:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 12:16:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 12:16:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 12:16:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 12:16:01] 
[2025-11-26 12:16:01] 2025-11-26 17:15:13,184 | INFO     | ***************************************
[2025-11-26 12:16:01] 2025-11-26 17:15:13,688 | INFO     | executing command: df -mP /tmp/boinchome/slots/6
[2025-11-26 12:16:01] 2025-11-26 17:15:13,713 | INFO     | sufficient remaining disk space (50644123648 B)
[2025-11-26 12:16:01] 2025-11-26 17:15:13,713 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 12:16:01] 2025-11-26 17:15:13,713 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 12:16:01] 2025-11-26 17:15:13,713 | INFO     | update_server=False
[2025-11-26 12:16:01] 2025-11-26 17:15:13,714 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 12:16:01] 2025-11-26 17:15:13,715 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 12:16:01] 2025-11-26 17:15:13,987 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 12:16:01] 2025-11-26 17:15:13,987 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 12:16:01] 2025-11-26 17:15:13,987 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:16:01] 2025-11-26 17:15:13,988 | INFO     | will abort loop
[2025-11-26 12:16:01] 2025-11-26 17:15:14,189 | INFO     | all payload control threads have been joined
[2025-11-26 12:16:01] 2025-11-26 17:15:14,266 | INFO     | all data control threads have been joined
[2025-11-26 12:16:01] 2025-11-26 17:15:14,689 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 12:16:01] 2025-11-26 17:15:14,720 | INFO     | [job] retrieve thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:14,996 | INFO     | [job] job monitor thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:15,027 | INFO     | all job control threads have been joined
[2025-11-26 12:16:01] 2025-11-26 17:15:15,197 | INFO     | [payload] control thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:15,273 | INFO     | [data] control thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:15,392 | INFO     | [data] copytool_in thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:15,658 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:15,721 | INFO     | [data] copytool_out thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:15,891 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:15,892 | INFO     | [payload] validate_post thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:16,033 | INFO     | [job] control thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:16,080 | INFO     | [payload] failed_post thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:16,080 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:16,099 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:16,117 | INFO     | [job] validate thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:16,382 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 12:16:01] 2025-11-26 17:15:17,387 | INFO     | [job] queue monitor thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:18,700 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 12:16:01] 2025-11-26 17:15:43,520 | INFO     | PID=393586 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-26 12:16:01] 2025-11-26 17:15:43,520 | INFO     | .. there are 37 such processes running
[2025-11-26 12:16:01] 2025-11-26 17:15:43,520 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 12:16:01] 2025-11-26 17:15:43,520 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 12:16:01] 2025-11-26 17:15:43,520 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 12:16:01] 2025-11-26 17:15:54,515 | INFO     | [monitor] cgroup control has ended
[2025-11-26 12:16:01] 2025-11-26 17:15:55,772 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139711527540544)>', '<ExcThread(monitor, started 139711041492736)>']
[2025-11-26 12:16:01] 2025-11-26 17:15:56,601 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 12:16:01] 2025-11-26 17:15:56,601 | INFO     | [monitor] control thread has ended
[2025-11-26 12:16:01] 2025-11-26 17:16:00,799 | INFO     | all workflow threads have been joined
[2025-11-26 12:16:01] 2025-11-26 17:16:00,799 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 12:16:01] 2025-11-26 17:16:00,800 | INFO     | traces error code: 0
[2025-11-26 12:16:01] 2025-11-26 17:16:00,800 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 12:16:01] 2025-11-26 17:16:01,115 [wrapper] ==== pilot stdout END ====
[2025-11-26 12:16:01] 2025-11-26 17:16:01,118 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 12:16:01] 2025-11-26 17:16:01,121 [wrapper] pilotpid: 393586
[2025-11-26 12:16:01] 2025-11-26 17:16:01,130 [wrapper] Pilot exit status: 0
[2025-11-26 12:16:01] 2025-11-26 17:16:01,183 [wrapper] pandaids: 6896713870
[2025-11-26 12:16:01] 2025-11-26 17:16:01,281 [wrapper] cleanup supervisor_pilot 2880784 393587
[2025-11-26 12:16:01] 2025-11-26 17:16:01,286 [wrapper] Test setup, not cleaning
[2025-11-26 12:16:01] 2025-11-26 17:16:01,291 [wrapper] apfmon messages muted
[2025-11-26 12:16:01] 2025-11-26 17:16:01,301 [wrapper] ==== wrapper stdout END ====
[2025-11-26 12:16:01] 2025-11-26 17:16:01,303 [wrapper] ==== wrapper stderr END ====
[2025-11-26 12:16:01]  *** Error codes and diagnostics ***
[2025-11-26 12:16:01]     "exeErrorCode": 0,
[2025-11-26 12:16:01]     "exeErrorDiag": "",
[2025-11-26 12:16:01]     "pilotErrorCode": 0,
[2025-11-26 12:16:01]     "pilotErrorDiag": "",
[2025-11-26 12:16:01]  *** Listing of results directory ***
[2025-11-26 12:16:01] total 1325632
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-26 12:16:01] -rwx------. 1 boincer umatlas     36292 Nov 25 01:15 runpilot2-wrapper.sh
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:15 queuedata.json
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:10 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 12:16:01] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:10 run_atlas
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:10 job.xml
[2025-11-26 12:16:01] -rw-r--r--. 2 boincer umatlas 408816330 Nov 26 00:10 EVNT.47483658._002118.pool.root.1
[2025-11-26 12:16:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-26 12:16:01] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:10 shared
[2025-11-26 12:16:01] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:10 input.tar.gz
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:10 boinc_lockfile
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:10 pandaJob.out
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas        57 Nov 26 00:10 setup.sh.local
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas    991877 Nov 26 00:11 agis_schedconf.cvmfs.json
[2025-11-26 12:16:01] drwx------. 5 boincer umatlas      4096 Nov 26 00:11 pilot3
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas       533 Nov 26 11:59 boinc_task_state.xml
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas      6843 Nov 26 12:10 init_data.xml
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas 929610199 Nov 26 12:14 HITS.47556161._001012.pool.root.1
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas      1057 Nov 26 12:14 memory_monitor_summary.json
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas        95 Nov 26 12:14 pilot_heartbeat.json
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas   1516240 Nov 26 12:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas   1944304 Nov 26 12:15 log.47556161._001012.job.log.tgz.1
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas      8617 Nov 26 12:15 heartbeat.json
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas        29 Nov 26 12:15 wrapper_checkpoint.txt
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 12:15 boinc_mmap_file
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas      5009 Nov 26 12:16 pilotlog.txt
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas   5603419 Nov 26 12:16 log.47556161._001012.job.log.1
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas       353 Nov 26 12:16 output.list
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas       620 Nov 26 12:16 runtime_log
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas   7567360 Nov 26 12:16 result.tar.gz
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas       661 Nov 26 12:16 86vMDm8V1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKCMKDmkzEi7m.diag
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 12:16 runtime_log.err
[2025-11-26 12:16:01] -rw-r--r--. 1 boincer umatlas     21316 Nov 26 12:16 stderr.txt
[2025-11-26 12:16:01] HITS file was successfully produced:
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas 929610199 Nov 26 12:14 shared/HITS.pool.root.1
[2025-11-26 12:16:01]  *** Contents of shared directory: ***
[2025-11-26 12:16:01] total 1315056
[2025-11-26 12:16:01] -rw-r--r--. 2 boincer umatlas 408816330 Nov 26 00:10 ATLAS.root_0
[2025-11-26 12:16:01] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:10 start_atlas.sh
[2025-11-26 12:16:01] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 00:10 input.tar.gz
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas 929610199 Nov 26 12:14 HITS.pool.root.1
[2025-11-26 12:16:01] -rw-------. 1 boincer umatlas   7567360 Nov 26 12:16 result.tar.gz
12:16:03 (389035): run_atlas exited; CPU time 232356.273955
12:16:03 (389035): called boinc_finish(0)

</stderr_txt>
]]>

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