Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:35 (134323): wrapper (7.7.26015): starting
00:00:35 (134323): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:00:35] Arguments: --nthreads 9
[2025-11-26 00:00:35] Threads: 9
[2025-11-26 00:00:35] Checking for CVMFS
[2025-11-26 00:00:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:00:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:00:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:00:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:00:36] 2.13.3.0 11250 29602 336680 153309 0 207 29763516 32935937 14387 16776704 0 94989235 99.478 127893082 39680 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:00:36] CVMFS is ok
[2025-11-26 00:00:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:00:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:00:36] Further information can be found at the LHC@home message board.
[2025-11-26 00:00:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:00:36] Checking for apptainer binary...
[2025-11-26 00:00:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:00:36] Running /usr/bin/apptainer --version
[2025-11-26 00:00:36] apptainer version 1.4.4-1.el9
[2025-11-26 00:00:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:00:37] c6-2-29-1.aglt2.org
[2025-11-26 00:00:37] apptainer works
[2025-11-26 00:00:37] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:00:37] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:00:37] Starting ATLAS job with PandaID=6896713850
[2025-11-26 00:00:37] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
22:45:30 (3669314): wrapper (7.7.26015): starting
22:45:30 (3669314): wrapper: running run_atlas (--nthreads 11)
[2025-11-26 22:45:30] Arguments: --nthreads 11
[2025-11-26 22:45:30] Threads: 11
[2025-11-26 22:45:30] This job has been restarted, cleaning up previous attempt
[2025-11-26 22:45:30] Checking for CVMFS
[2025-11-26 22:45:31] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 22:45:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 22:45:31] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 22:45:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 22:45:31] 2.13.3.0 11250 30967 339704 153345 1 404 30533994 32935937 15121 16776704 0 98913414 99.483 132569176 39545 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 22:45:31] CVMFS is ok
[2025-11-26 22:45:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 22:45:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 22:45:31] Further information can be found at the LHC@home message board.
[2025-11-26 22:45:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 22:45:31] Checking for apptainer binary...
[2025-11-26 22:45:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 22:45:31] Running /usr/bin/apptainer --version
[2025-11-26 22:45:31] apptainer version 1.4.4-1.el9
[2025-11-26 22:45:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 22:45:31] c6-2-29-1.aglt2.org
[2025-11-26 22:45:31] apptainer works
[2025-11-26 22:45:31] Set ATHENA_PROC_NUMBER=11
[2025-11-26 22:45:31] Set ATHENA_CORE_NUMBER=11
[2025-11-26 22:45:31] Starting ATLAS job with PandaID=6896713850
[2025-11-26 22:45:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 19:06:00]  *** The last 200 lines of the pilot log: ***
[2025-11-27 19:06:00] 2025-11-28 00:05:19,346 | INFO     | sum of square deviations: 534476324912.44244
[2025-11-27 19:06:00] 2025-11-28 00:05:19,369 | INFO     | sum of deviations: 4834886150250.418
[2025-11-27 19:06:00] 2025-11-28 00:05:19,369 | INFO     | mean x: 1764251718.323603
[2025-11-27 19:06:00] 2025-11-28 00:05:19,370 | INFO     | mean y: 3304994.6071726438
[2025-11-27 19:06:00] 2025-11-28 00:05:19,370 | INFO     | intersect: -15956160001.107393
[2025-11-27 19:06:00] 2025-11-28 00:05:19,371 | INFO     | chi2: 6.834577837302292
[2025-11-27 19:06:00] 2025-11-28 00:05:19,372 | INFO     | sum of square deviations: 527818379997.834
[2025-11-27 19:06:00] 2025-11-28 00:05:19,395 | INFO     | sum of deviations: 5305153810885.165
[2025-11-27 19:06:00] 2025-11-28 00:05:19,395 | INFO     | mean x: 1764251565.8333333
[2025-11-27 19:06:00] 2025-11-28 00:05:19,396 | INFO     | mean y: 3315767.1164154103
[2025-11-27 19:06:00] 2025-11-28 00:05:19,396 | INFO     | intersect: -17729348104.64803
[2025-11-27 19:06:00] 2025-11-28 00:05:19,397 | INFO     | chi2: 3.5645461089105313
[2025-11-27 19:06:00] 2025-11-28 00:05:19,397 | INFO     | current chi2=3.5645461089105313 (change=47.845409127456655 %)
[2025-11-27 19:06:00] 2025-11-28 00:05:19,398 | INFO     | sum of square deviations: 521215971007.99646
[2025-11-27 19:06:00] 2025-11-28 00:05:19,421 | INFO     | sum of deviations: 5528022765978.746
[2025-11-27 19:06:00] 2025-11-28 00:05:19,421 | INFO     | mean x: 1764251413.3431456
[2025-11-27 19:06:00] 2025-11-28 00:05:19,422 | INFO     | mean y: 3320911.079058032
[2025-11-27 19:06:00] 2025-11-28 00:05:19,422 | INFO     | intersect: -18708350488.801086
[2025-11-27 19:06:00] 2025-11-28 00:05:19,423 | INFO     | chi2: 2.5795359704666656
[2025-11-27 19:06:00] 2025-11-28 00:05:19,423 | INFO     | current chi2=2.5795359704666656 (change=27.633536173976562 %)
[2025-11-27 19:06:00] 2025-11-28 00:05:19,424 | INFO     | sum of square deviations: 514668357697.3298
[2025-11-27 19:06:00] 2025-11-28 00:05:19,446 | INFO     | sum of deviations: 5488987735399.687
[2025-11-27 19:06:00] 2025-11-28 00:05:19,447 | INFO     | mean x: 1764251260.8471284
[2025-11-27 19:06:00] 2025-11-28 00:05:19,447 | INFO     | mean y: 3320000.600506757
[2025-11-27 19:06:00] 2025-11-28 00:05:19,447 | INFO     | intersect: -18812590066.76823
[2025-11-27 19:06:00] 2025-11-28 00:05:19,448 | INFO     | chi2: 2.562376181711646
[2025-11-27 19:06:00] 2025-11-28 00:05:19,448 | INFO     | current chi2=2.562376181711646 (change=0.6652277367512365 %)
[2025-11-27 19:06:00] 2025-11-28 00:05:19,448 | INFO     | right removable region: 1183
[2025-11-27 19:06:00] 2025-11-28 00:05:19,449 | INFO     | sum of square deviations: 527816753436.4989
[2025-11-27 19:06:00] 2025-11-28 00:05:19,490 | INFO     | sum of deviations: 4445319247398.164
[2025-11-27 19:06:00] 2025-11-28 00:05:19,490 | INFO     | mean x: 1764251870.832496
[2025-11-27 19:06:00] 2025-11-28 00:05:19,490 | INFO     | mean y: 3313907.495812395
[2025-11-27 19:06:00] 2025-11-28 00:05:19,490 | INFO     | intersect: -14855370944.032793
[2025-11-27 19:06:00] 2025-11-28 00:05:19,491 | INFO     | chi2: 4.5998127281839
[2025-11-27 19:06:00] 2025-11-28 00:05:19,492 | INFO     | current chi2=4.5998127281839 (change=32.69792461681125 %)
[2025-11-27 19:06:00] 2025-11-28 00:05:19,493 | INFO     | sum of square deviations: 521213373290.4442
[2025-11-27 19:06:00] 2025-11-28 00:05:19,521 | INFO     | sum of deviations: 4314444881178.193
[2025-11-27 19:06:00] 2025-11-28 00:05:19,521 | INFO     | mean x: 1764252023.333894
[2025-11-27 19:06:00] 2025-11-28 00:05:19,521 | INFO     | mean y: 3316929.7123633306
[2025-11-27 19:06:00] 2025-11-28 00:05:19,521 | INFO     | intersect: -14600621689.758858
[2025-11-27 19:06:00] 2025-11-28 00:05:19,523 | INFO     | chi2: 4.51379678813822
[2025-11-27 19:06:00] 2025-11-28 00:05:19,523 | INFO     | current chi2=4.51379678813822 (change=1.8699878696940124 %)
[2025-11-27 19:06:00] 2025-11-28 00:05:19,523 | INFO     | left removable region: 20
[2025-11-27 19:06:00] 2025-11-28 00:05:19,525 | INFO     | sum of square deviations: 487764403611.1485
[2025-11-27 19:06:00] 2025-11-28 00:05:19,557 | INFO     | sum of deviations: 4742848487250.463
[2025-11-27 19:06:00] 2025-11-28 00:05:19,558 | INFO     | mean x: 1764251840.3637145
[2025-11-27 19:06:00] 2025-11-28 00:05:19,558 | INFO     | mean y: 3337118.920894239
[2025-11-27 19:06:00] 2025-11-28 00:05:19,558 | INFO     | intersect: -17151623575.727541
[2025-11-27 19:06:00] 2025-11-28 00:05:19,559 | INFO     | chi2: 0.14599470400890066
[2025-11-27 19:06:00] 2025-11-28 00:05:19,560 | INFO     | current memory leak: 9.72 B/s (using 1163 data points, chi2=0.15)
[2025-11-27 19:06:00] 2025-11-28 00:05:19,561 | INFO     | could have reported an average CPU frequency of 2732 MHz (43 samples)
[2025-11-27 19:06:00] 2025-11-28 00:05:19,561 | INFO     | ..............................
[2025-11-27 19:06:00] 2025-11-28 00:05:19,562 | INFO     | . Timing measurements:
[2025-11-27 19:06:00] 2025-11-28 00:05:19,562 | INFO     | . get job = 0 s
[2025-11-27 19:06:00] 2025-11-28 00:05:19,562 | INFO     | . initial setup = 2 s
[2025-11-27 19:06:00] 2025-11-28 00:05:19,562 | INFO     | . payload setup = 7 s
[2025-11-27 19:06:00] 2025-11-28 00:05:19,562 | INFO     | . stage-in = 0 s
[2025-11-27 19:06:00] 2025-11-28 00:05:19,562 | INFO     | . payload execution = 73129 s
[2025-11-27 19:06:00] 2025-11-28 00:05:19,562 | INFO     | . stage-out = 4 s
[2025-11-27 19:06:00] 2025-11-28 00:05:19,562 | INFO     | . log creation = 0 s
[2025-11-27 19:06:00] 2025-11-28 00:05:19,562 | INFO     | ..............................
[2025-11-27 19:06:00] 2025-11-28 00:05:19,780 | INFO     | time since job start (73174s) is within the limit (172800.0s)
[2025-11-27 19:06:00] 2025-11-28 00:05:20,013 | INFO     | 
[2025-11-27 19:06:00] 2025-11-28 00:05:20,013 | INFO     | job summary report
[2025-11-27 19:06:00] 2025-11-28 00:05:20,013 | INFO     | --------------------------------------------------
[2025-11-27 19:06:00] 2025-11-28 00:05:20,013 | INFO     | PanDA job id: 6896713850
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | task id: 47556161
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | errors: (none)
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | pilot state: finished 
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | transexitcode: 0
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | exeerrorcode: 0
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | exeerrordiag: 
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | exitcode: 0
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | exitmsg: OK
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | cpuconsumptiontime: 258967 s
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | nevents: 1000
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | neventsw: 0
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | pid: 3700658
[2025-11-27 19:06:00] 2025-11-28 00:05:20,014 | INFO     | pgrp: 3700658
[2025-11-27 19:06:00] 2025-11-28 00:05:20,015 | INFO     | corecount: 11
[2025-11-27 19:06:00] 2025-11-28 00:05:20,015 | INFO     | event service: False
[2025-11-27 19:06:00] 2025-11-28 00:05:20,015 | INFO     | sizes: {0: 2284211, 6: 2284473, 11: 2284501, 73140: 2343976, 73145: 2352970, 73146: 2353026, 73158: 2353400}
[2025-11-27 19:06:00] 2025-11-28 00:05:20,015 | INFO     | --------------------------------------------------
[2025-11-27 19:06:00] 2025-11-28 00:05:20,015 | INFO     | 
[2025-11-27 19:06:00] 2025-11-28 00:05:20,015 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 19:06:00] 2025-11-28 00:05:20,081 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,081 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,081 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,082 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,083 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 19:06:00] 2025-11-28 00:05:20,083 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,083 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 19:06:00] 2025-11-28 00:05:20,083 | INFO     | job 6896713850 has completed (purged errors)
[2025-11-27 19:06:00] 2025-11-28 00:05:20,083 | INFO     | overall cleanup function is called
[2025-11-27 19:06:00] 2025-11-28 00:05:21,101 | INFO     | --- collectZombieJob: --- 10, [3700658]
[2025-11-27 19:06:00] 2025-11-28 00:05:21,102 | INFO     | zombie collector waiting for pid 3700658
[2025-11-27 19:06:00] 2025-11-28 00:05:21,102 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 19:06:00] 2025-11-28 00:05:21,102 | INFO     | collected zombie processes
[2025-11-27 19:06:00] 2025-11-28 00:05:21,102 | INFO     | will attempt to kill all subprocesses of pid=3700658
[2025-11-27 19:06:00] 2025-11-28 00:05:21,374 | INFO     | PID=3680857 has CPU usage=17.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-27 19:06:00] 2025-11-28 00:05:21,374 | INFO     | .. there are 19 such processes running
[2025-11-27 19:06:00] 2025-11-28 00:05:21,547 | INFO     | process IDs to be killed: [3700658] (in reverse order)
[2025-11-27 19:06:00] 2025-11-28 00:05:21,670 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 19:06:00] 2025-11-28 00:05:21,670 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 19:06:00] 2025-11-28 00:05:21,682 | INFO     | did not find any defunct processes belonging to 3700658
[2025-11-27 19:06:00] 2025-11-28 00:05:21,695 | INFO     | did not find any defunct processes belonging to 3700658
[2025-11-27 19:06:00] 2025-11-28 00:05:21,697 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 19:06:00] 2025-11-28 00:05:21,697 | INFO     | ready for new job
[2025-11-27 19:06:00] 2025-11-28 00:05:21,697 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 19:06:00] 2025-11-28 00:05:21,702 | INFO     | ***************************************
[2025-11-27 19:06:00] 2025-11-28 00:05:21,702 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 19:06:00] 2025-11-28 00:05:21,702 | INFO     | ***************************************
[2025-11-27 19:06:00] 2025-11-28 00:05:21,702 | INFO     | 
[2025-11-27 19:06:00] 2025-11-28 00:05:21,705 | INFO     | architecture information:
[2025-11-27 19:06:00] 2025-11-28 00:05:21,706 | INFO     | executing command: cat /etc/os-release
[2025-11-27 19:06:00] 2025-11-28 00:05:21,722 | INFO     | cat /etc/os-release:
[2025-11-27 19:06:00] NAME="CentOS Linux"
[2025-11-27 19:06:00] VERSION="7 (Core)"
[2025-11-27 19:06:00] ID="centos"
[2025-11-27 19:06:00] ID_LIKE="rhel fedora"
[2025-11-27 19:06:00] VERSION_ID="7"
[2025-11-27 19:06:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 19:06:00] ANSI_COLOR="0;31"
[2025-11-27 19:06:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 19:06:00] HOME_URL="https://www.centos.org/"
[2025-11-27 19:06:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 19:06:00] 
[2025-11-27 19:06:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 19:06:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 19:06:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 19:06:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 19:06:00] 
[2025-11-27 19:06:00] 2025-11-28 00:05:21,723 | INFO     | ***************************************
[2025-11-27 19:06:00] 2025-11-28 00:05:22,227 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 19:06:00] 2025-11-28 00:05:22,276 | INFO     | sufficient remaining disk space (70476890112 B)
[2025-11-27 19:06:00] 2025-11-28 00:05:22,276 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 19:06:00] 2025-11-28 00:05:22,276 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 19:06:00] 2025-11-28 00:05:22,276 | INFO     | update_server=False
[2025-11-27 19:06:00] 2025-11-28 00:05:22,276 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 19:06:00] 2025-11-28 00:05:22,277 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-27 19:06:00] 2025-11-28 00:05:22,277 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 19:06:00] 2025-11-28 00:05:22,277 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 19:06:00] 2025-11-28 00:05:22,277 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 19:06:00] 2025-11-28 00:05:22,374 | INFO     | all payload control threads have been joined
[2025-11-27 19:06:00] 2025-11-28 00:05:22,426 | INFO     | all data control threads have been joined
[2025-11-27 19:06:00] 2025-11-28 00:05:22,496 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:06:00] 2025-11-28 00:05:22,496 | INFO     | aborting loop
[2025-11-27 19:06:00] 2025-11-28 00:05:22,870 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 19:06:00] 2025-11-28 00:05:22,955 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 19:06:00] 2025-11-28 00:05:23,071 | INFO     | all job control threads have been joined
[2025-11-27 19:06:00] 2025-11-28 00:05:23,281 | INFO     | [job] retrieve thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:23,300 | INFO     | [data] copytool_in thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:23,301 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:23,380 | INFO     | [payload] control thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:23,431 | INFO     | [data] control thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:23,434 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:23,502 | INFO     | [job] job monitor thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:24,077 | INFO     | [job] control thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:24,280 | INFO     | [job] validate thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:24,369 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:24,555 | INFO     | [payload] failed_post thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:24,564 | INFO     | [payload] validate_post thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:24,702 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 19:06:00] 2025-11-28 00:05:24,962 | INFO     | [data] copytool_out thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:25,708 | INFO     | [job] queue monitor thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:26,879 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:32,772 | INFO     | job.realtimelogging is not enabled
[2025-11-27 19:06:00] 2025-11-28 00:05:33,778 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 19:06:00] 2025-11-28 00:05:54,595 | INFO     | [monitor] cgroup control has ended
[2025-11-27 19:06:00] 2025-11-28 00:05:54,631 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140479837263680)>', '<ExcThread(monitor, started 140479119226624)>']
[2025-11-27 19:06:00] 2025-11-28 00:05:55,482 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 19:06:00] 2025-11-28 00:05:55,482 | INFO     | [monitor] control thread has ended
[2025-11-27 19:06:00] 2025-11-28 00:05:59,656 | INFO     | all workflow threads have been joined
[2025-11-27 19:06:00] 2025-11-28 00:05:59,656 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 19:06:00] 2025-11-28 00:05:59,657 | INFO     | traces error code: 0
[2025-11-27 19:06:00] 2025-11-28 00:05:59,657 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 19:06:00] 2025-11-28 00:05:59,843 [wrapper] ==== pilot stdout END ====
[2025-11-27 19:06:00] 2025-11-28 00:05:59,879 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 19:06:00] 2025-11-28 00:05:59,882 [wrapper] pilotpid: 3680857
[2025-11-27 19:06:00] 2025-11-28 00:05:59,885 [wrapper] Pilot exit status: 0
[2025-11-27 19:06:00] 2025-11-28 00:05:59,953 [wrapper] pandaids: 6896713850 6896713850
[2025-11-27 19:06:00] 2025-11-28 00:06:00,102 [wrapper] cleanup supervisor_pilot 2569429 3680858
[2025-11-27 19:06:00] 2025-11-28 00:06:00,105 [wrapper] Test setup, not cleaning
[2025-11-27 19:06:00] 2025-11-28 00:06:00,110 [wrapper] apfmon messages muted
[2025-11-27 19:06:00] 2025-11-28 00:06:00,113 [wrapper] ==== wrapper stdout END ====
[2025-11-27 19:06:00] 2025-11-28 00:06:00,116 [wrapper] ==== wrapper stderr END ====
[2025-11-27 19:06:00]  *** Error codes and diagnostics ***
[2025-11-27 19:06:00]     "exeErrorCode": 0,
[2025-11-27 19:06:00]     "exeErrorDiag": "",
[2025-11-27 19:06:00]     "pilotErrorCode": 0,
[2025-11-27 19:06:00]     "pilotErrorDiag": "",
[2025-11-27 19:06:00]  *** Listing of results directory ***
[2025-11-27 19:06:00] total 1740152
[2025-11-27 19:06:00] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-27 19:06:00] -rwx------. 1 boincer umatlas     36292 Nov 25 01:10 runpilot2-wrapper.sh
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:10 queuedata.json
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 19:06:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:00 run_atlas
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:00 job.xml
[2025-11-27 19:06:00] -rw-r--r--. 3 boincer umatlas 411078914 Nov 26 00:00 EVNT.47483658._002116.pool.root.1
[2025-11-27 19:06:00] -rw-r--r--. 3 boincer umatlas 411078914 Nov 26 00:00 ATLAS.root_0
[2025-11-27 19:06:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-27 19:06:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:00 shared
[2025-11-27 19:06:00] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:00 input.tar.gz
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:00 boinc_lockfile
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas      2783 Nov 26 22:45 pandaJob.out
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas        57 Nov 26 22:45 setup.sh.local
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas    991546 Nov 26 22:45 agis_schedconf.cvmfs.json
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas       533 Nov 27 18:53 boinc_task_state.xml
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas      6845 Nov 27 19:01 init_data.xml
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas 931514236 Nov 27 19:04 HITS.47556161._000992.pool.root.1
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas        96 Nov 27 19:04 pilot_heartbeat.json
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas      1068 Nov 27 19:04 memory_monitor_summary.json
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas   1516240 Nov 27 19:05 agis_ddmendpoints.agis.ALL.json
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas   2626775 Nov 27 19:05 log.47556161._000992.job.log.tgz.1
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas      8639 Nov 27 19:05 heartbeat.json
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas        29 Nov 27 19:05 wrapper_checkpoint.txt
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 19:05 boinc_mmap_file
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas      4624 Nov 27 19:05 pilotlog.txt
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas   9525862 Nov 27 19:06 log.47556161._000992.job.log.1
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas       353 Nov 27 19:06 output.list
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas       620 Nov 27 19:06 runtime_log
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas  12175360 Nov 27 19:06 result.tar.gz
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas      9435 Nov 27 19:06 runtime_log.err
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas       790 Nov 27 19:06 B62LDmYR1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8BMKDm4MkDfn.diag
[2025-11-27 19:06:00] -rw-r--r--. 1 boincer umatlas     23354 Nov 27 19:06 stderr.txt
[2025-11-27 19:06:00] HITS file was successfully produced:
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas 931514236 Nov 27 19:04 shared/HITS.pool.root.1
[2025-11-27 19:06:00]  *** Contents of shared directory: ***
[2025-11-27 19:06:00] total 1323628
[2025-11-27 19:06:00] -rw-r--r--. 3 boincer umatlas 411078914 Nov 26 00:00 ATLAS.root_0
[2025-11-27 19:06:00] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-27 19:06:00] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:00 input.tar.gz
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas 931514236 Nov 27 19:04 HITS.pool.root.1
[2025-11-27 19:06:00] -rw-------. 1 boincer umatlas  12175360 Nov 27 19:06 result.tar.gz
19:06:01 (3669314): run_atlas exited; CPU time 260254.514419
19:06:01 (3669314): called boinc_finish(0)

</stderr_txt>
]]>

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