Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:31:04 (597864): wrapper (7.7.26015): starting
19:31:04 (597864): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 19:31:04] Arguments: --nthreads 9
[2025-11-26 19:31:04] Threads: 9
[2025-11-26 19:31:04] Checking for CVMFS
[2025-11-26 19:31:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 19:31:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 19:31:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 19:31:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 19:31:06] 2.13.2.0 8790 36562 268800 153341 1 406 39604375 40960000 12186 16776704 0 36325870 99.657 31336550 39258 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 19:31:06] CVMFS is ok
[2025-11-26 19:31:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 19:31:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 19:31:06] Further information can be found at the LHC@home message board.
[2025-11-26 19:31:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 19:31:06] Checking for apptainer binary...
[2025-11-26 19:31:06] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 19:31:06] Running /usr/bin/apptainer --version
[2025-11-26 19:31:07] apptainer version 1.4.4-1.el9
[2025-11-26 19:31:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 19:31:07] c-210-33-1.aglt2.org
[2025-11-26 19:31:07] apptainer works
[2025-11-26 19:31:07] Set ATHENA_PROC_NUMBER=9
[2025-11-26 19:31:07] Set ATHENA_CORE_NUMBER=9
[2025-11-26 19:31:07] Starting ATLAS job with PandaID=6896714097
[2025-11-26 19:31:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 13:45:16]  *** The last 200 lines of the pilot log: ***
[2025-11-27 13:45:16] 2025-11-27 18:44:41,160 | INFO     | time since job start (65556s) is within the limit (172800.0s)
[2025-11-27 13:45:16] 2025-11-27 18:44:41,917 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 13:45:16] 2025-11-27 18:44:41,958 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2840.176374999999
[2025-11-27 13:45:16] 2025-11-27 18:44:41,970 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6896714097/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 13:45:16] 2025-11-27 18:44:41,972 | INFO     | extracted standard info from prmon json
[2025-11-27 13:45:16] 2025-11-27 18:44:41,972 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 13:45:16] 2025-11-27 18:44:41,976 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 13:45:16] 2025-11-27 18:44:42,058 | INFO     | fitting pss+swap vs Time
[2025-11-27 13:45:16] 2025-11-27 18:44:42,093 | INFO     | sum of square deviations: 383049367558.3821
[2025-11-27 13:45:16] 2025-11-27 18:44:42,123 | INFO     | sum of deviations: 2252650192187.2397
[2025-11-27 13:45:16] 2025-11-27 18:44:42,124 | INFO     | mean x: 1764236339.1575024
[2025-11-27 13:45:16] 2025-11-27 18:44:42,124 | INFO     | mean y: 3091367.939422181
[2025-11-27 13:45:16] 2025-11-27 18:44:42,124 | INFO     | intersect: -10372091741.744566
[2025-11-27 13:45:16] 2025-11-27 18:44:42,125 | INFO     | chi2: 11.524849740023589
[2025-11-27 13:45:16] 2025-11-27 18:44:42,126 | INFO     | sum of square deviations: 377719871344.9988
[2025-11-27 13:45:16] 2025-11-27 18:44:42,150 | INFO     | sum of deviations: 2636345472978.993
[2025-11-27 13:45:16] 2025-11-27 18:44:42,150 | INFO     | mean x: 1764236186.667603
[2025-11-27 13:45:16] 2025-11-27 18:44:42,150 | INFO     | mean y: 3102342.673220974
[2025-11-27 13:45:16] 2025-11-27 18:44:42,150 | INFO     | intersect: -12310615935.967829
[2025-11-27 13:45:16] 2025-11-27 18:44:42,152 | INFO     | chi2: 8.262987753516777
[2025-11-27 13:45:16] 2025-11-27 18:44:42,152 | INFO     | current chi2=8.262987753516777 (change=28.30285912690898 %)
[2025-11-27 13:45:16] 2025-11-27 18:44:42,154 | INFO     | sum of square deviations: 372440050481.39557
[2025-11-27 13:45:16] 2025-11-27 18:44:42,237 | INFO     | sum of deviations: 2855205997178.4507
[2025-11-27 13:45:16] 2025-11-27 18:44:42,237 | INFO     | mean x: 1764236034.1777987
[2025-11-27 13:45:16] 2025-11-27 18:44:42,237 | INFO     | mean y: 3108663.764816557
[2025-11-27 13:45:16] 2025-11-27 18:44:42,237 | INFO     | intersect: -13521906432.52221
[2025-11-27 13:45:16] 2025-11-27 18:44:42,238 | INFO     | chi2: 7.0768183271241965
[2025-11-27 13:45:16] 2025-11-27 18:44:42,239 | INFO     | current chi2=7.0768183271241965 (change=14.355212203815013 %)
[2025-11-27 13:45:16] 2025-11-27 18:44:42,239 | INFO     | right removable region: 1062
[2025-11-27 13:45:16] 2025-11-27 18:44:42,240 | INFO     | sum of square deviations: 377718459194.9989
[2025-11-27 13:45:16] 2025-11-27 18:44:42,260 | INFO     | sum of deviations: 1852032406685.8738
[2025-11-27 13:45:16] 2025-11-27 18:44:42,260 | INFO     | mean x: 1764236491.667603
[2025-11-27 13:45:16] 2025-11-27 18:44:42,260 | INFO     | mean y: 3102823.458801498
[2025-11-27 13:45:16] 2025-11-27 18:44:42,260 | INFO     | intersect: -8647316757.807602
[2025-11-27 13:45:16] 2025-11-27 18:44:42,261 | INFO     | chi2: 8.422915613379418
[2025-11-27 13:45:16] 2025-11-27 18:44:42,262 | INFO     | current chi2=8.422915613379418 (change=26.915180645451276 %)
[2025-11-27 13:45:16] 2025-11-27 18:44:42,263 | INFO     | sum of square deviations: 372437616965.4955
[2025-11-27 13:45:16] 2025-11-27 18:44:42,283 | INFO     | sum of deviations: 1745843834503.4387
[2025-11-27 13:45:16] 2025-11-27 18:44:42,284 | INFO     | mean x: 1764236644.1721542
[2025-11-27 13:45:16] 2025-11-27 18:44:42,284 | INFO     | mean y: 3105889.4675446847
[2025-11-27 13:45:16] 2025-11-27 18:44:42,284 | INFO     | intersect: -8266954726.1290455
[2025-11-27 13:45:16] 2025-11-27 18:44:42,285 | INFO     | chi2: 8.301450463519977
[2025-11-27 13:45:16] 2025-11-27 18:44:42,286 | INFO     | current chi2=8.301450463519977 (change=1.4420796246195218 %)
[2025-11-27 13:45:16] 2025-11-27 18:44:42,286 | INFO     | left removable region: 20
[2025-11-27 13:45:16] 2025-11-27 18:44:42,289 | INFO     | sum of square deviations: 350798159020.9521
[2025-11-27 13:45:16] 2025-11-27 18:44:42,315 | INFO     | sum of deviations: 2225934045262.4023
[2025-11-27 13:45:16] 2025-11-27 18:44:42,316 | INFO     | mean x: 1764236613.6948175
[2025-11-27 13:45:16] 2025-11-27 18:44:42,316 | INFO     | mean y: 3129728.167946257
[2025-11-27 13:45:16] 2025-11-27 18:44:42,316 | INFO     | intersect: -11191553713.962648
[2025-11-27 13:45:16] 2025-11-27 18:44:42,317 | INFO     | chi2: 3.4921366418974573
[2025-11-27 13:45:16] 2025-11-27 18:44:42,318 | INFO     | current memory leak: 6.35 B/s (using 1042 data points, chi2=3.49)
[2025-11-27 13:45:16] 2025-11-27 18:44:42,335 | INFO     | could have reported an average CPU frequency of 2867 MHz (39 samples)
[2025-11-27 13:45:16] 2025-11-27 18:44:42,336 | INFO     | ..............................
[2025-11-27 13:45:16] 2025-11-27 18:44:42,336 | INFO     | . Timing measurements:
[2025-11-27 13:45:16] 2025-11-27 18:44:42,336 | INFO     | . get job = 0 s
[2025-11-27 13:45:16] 2025-11-27 18:44:42,336 | INFO     | . initial setup = 4 s
[2025-11-27 13:45:16] 2025-11-27 18:44:42,336 | INFO     | . payload setup = 33 s
[2025-11-27 13:45:16] 2025-11-27 18:44:42,336 | INFO     | . stage-in = 0 s
[2025-11-27 13:45:16] 2025-11-27 18:44:42,336 | INFO     | . payload execution = 65432 s
[2025-11-27 13:45:16] 2025-11-27 18:44:42,336 | INFO     | . stage-out = 7 s
[2025-11-27 13:45:16] 2025-11-27 18:44:42,336 | INFO     | . log creation = 1 s
[2025-11-27 13:45:16] 2025-11-27 18:44:42,336 | INFO     | ..............................
[2025-11-27 13:45:16] 2025-11-27 18:44:42,818 | INFO     | 
[2025-11-27 13:45:16] 2025-11-27 18:44:42,818 | INFO     | job summary report
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | --------------------------------------------------
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | PanDA job id: 6896714097
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | task id: 47556161
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | errors: (none)
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | pilot state: finished 
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | transexitcode: 0
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | exeerrorcode: 0
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | exeerrordiag: 
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | exitcode: 0
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | exitmsg: OK
[2025-11-27 13:45:16] 2025-11-27 18:44:42,819 | INFO     | cpuconsumptiontime: 242591 s
[2025-11-27 13:45:16] 2025-11-27 18:44:42,820 | INFO     | nevents: 1000
[2025-11-27 13:45:16] 2025-11-27 18:44:42,820 | INFO     | neventsw: 0
[2025-11-27 13:45:16] 2025-11-27 18:44:42,820 | INFO     | pid: 610829
[2025-11-27 13:45:16] 2025-11-27 18:44:42,820 | INFO     | pgrp: 610829
[2025-11-27 13:45:16] 2025-11-27 18:44:42,820 | INFO     | corecount: 9
[2025-11-27 13:45:16] 2025-11-27 18:44:42,820 | INFO     | event service: False
[2025-11-27 13:45:16] 2025-11-27 18:44:42,820 | INFO     | sizes: {0: 2283385, 1: 2284070, 2: 2284269, 13: 2284269, 23: 2284325, 27: 2284615, 34: 2284771, 65470: 2340861, 65477: 2349855, 65478: 2349911, 65501: 2350157}
[2025-11-27 13:45:16] 2025-11-27 18:44:42,820 | INFO     | --------------------------------------------------
[2025-11-27 13:45:16] 2025-11-27 18:44:42,820 | INFO     | 
[2025-11-27 13:45:16] 2025-11-27 18:44:42,820 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-27 13:45:16] 2025-11-27 18:44:42,883 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,883 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,884 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,884 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,884 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,884 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,884 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,884 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,884 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,884 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,884 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,884 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,885 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,885 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,885 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,885 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,885 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,885 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 13:45:16] 2025-11-27 18:44:42,885 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,885 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 13:45:16] 2025-11-27 18:44:42,885 | INFO     | job 6896714097 has completed (purged errors)
[2025-11-27 13:45:16] 2025-11-27 18:44:42,886 | INFO     | overall cleanup function is called
[2025-11-27 13:45:16] 2025-11-27 18:44:43,981 | INFO     | --- collectZombieJob: --- 10, [610829]
[2025-11-27 13:45:16] 2025-11-27 18:44:43,981 | INFO     | zombie collector waiting for pid 610829
[2025-11-27 13:45:16] 2025-11-27 18:44:43,981 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 13:45:16] 2025-11-27 18:44:43,982 | INFO     | collected zombie processes
[2025-11-27 13:45:16] 2025-11-27 18:44:43,982 | INFO     | will attempt to kill all subprocesses of pid=610829
[2025-11-27 13:45:16] 2025-11-27 18:44:44,974 | INFO     | process IDs to be killed: [610829] (in reverse order)
[2025-11-27 13:45:16] 2025-11-27 18:44:45,150 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 13:45:16] 2025-11-27 18:44:45,151 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 13:45:16] 2025-11-27 18:44:45,231 | INFO     | did not find any defunct processes belonging to 610829
[2025-11-27 13:45:16] 2025-11-27 18:44:45,247 | INFO     | did not find any defunct processes belonging to 610829
[2025-11-27 13:45:16] 2025-11-27 18:44:45,249 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 13:45:16] 2025-11-27 18:44:45,249 | INFO     | ready for new job
[2025-11-27 13:45:16] 2025-11-27 18:44:45,249 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 13:45:16] 2025-11-27 18:44:45,256 | INFO     | ***************************************
[2025-11-27 13:45:16] 2025-11-27 18:44:45,256 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 13:45:16] 2025-11-27 18:44:45,256 | INFO     | ***************************************
[2025-11-27 13:45:16] 2025-11-27 18:44:45,256 | INFO     | 
[2025-11-27 13:45:16] 2025-11-27 18:44:45,259 | INFO     | architecture information:
[2025-11-27 13:45:16] 2025-11-27 18:44:45,262 | INFO     | executing command: cat /etc/os-release
[2025-11-27 13:45:16] 2025-11-27 18:44:45,310 | INFO     | cat /etc/os-release:
[2025-11-27 13:45:16] NAME="CentOS Linux"
[2025-11-27 13:45:16] VERSION="7 (Core)"
[2025-11-27 13:45:16] ID="centos"
[2025-11-27 13:45:16] ID_LIKE="rhel fedora"
[2025-11-27 13:45:16] VERSION_ID="7"
[2025-11-27 13:45:16] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 13:45:16] ANSI_COLOR="0;31"
[2025-11-27 13:45:16] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 13:45:16] HOME_URL="https://www.centos.org/"
[2025-11-27 13:45:16] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 13:45:16] 
[2025-11-27 13:45:16] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 13:45:16] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 13:45:16] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 13:45:16] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 13:45:16] 
[2025-11-27 13:45:16] 2025-11-27 18:44:45,310 | INFO     | ***************************************
[2025-11-27 13:45:16] 2025-11-27 18:44:45,813 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-27 13:45:16] 2025-11-27 18:44:45,875 | INFO     | sufficient remaining disk space (67060629504 B)
[2025-11-27 13:45:16] 2025-11-27 18:44:45,875 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 13:45:16] 2025-11-27 18:44:45,875 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 13:45:16] 2025-11-27 18:44:45,876 | INFO     | update_server=False
[2025-11-27 13:45:16] 2025-11-27 18:44:45,876 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 13:45:16] 2025-11-27 18:44:45,876 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 13:45:16] 2025-11-27 18:44:45,904 | INFO     | all job control threads have been joined
[2025-11-27 13:45:16] 2025-11-27 18:44:46,155 | INFO     | all payload control threads have been joined
[2025-11-27 13:45:16] 2025-11-27 18:44:46,218 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 13:45:16] 2025-11-27 18:44:46,218 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 13:45:16] 2025-11-27 18:44:46,219 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:45:16] 2025-11-27 18:44:46,219 | INFO     | will abort loop
[2025-11-27 13:45:16] 2025-11-27 18:44:46,517 | INFO     | all data control threads have been joined
[2025-11-27 13:45:16] 2025-11-27 18:44:46,881 | INFO     | [job] retrieve thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:46,910 | INFO     | [job] control thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:47,041 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:47,063 | INFO     | [job] validate thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:47,163 | INFO     | [payload] control thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:47,224 | INFO     | [job] job monitor thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:47,231 | INFO     | [payload] validate_post thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:47,429 | INFO     | [payload] failed_post thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:47,524 | INFO     | [data] control thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:47,798 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 13:45:16] 2025-11-27 18:44:47,839 | INFO     | [data] copytool_in thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:47,883 | INFO     | [data] copytool_out thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:48,295 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 13:45:16] 2025-11-27 18:44:48,336 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:48,338 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:48,338 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:48,804 | INFO     | [job] queue monitor thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:44:52,304 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 13:45:16] 2025-11-27 18:45:01,432 | INFO     | [monitor] cgroup control has ended
[2025-11-27 13:45:16] 2025-11-27 18:45:02,321 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139715449825088)>', '<ExcThread(monitor, started 139714816374528)>']
[2025-11-27 13:45:16] 2025-11-27 18:45:07,376 | INFO     | all workflow threads have been joined
[2025-11-27 13:45:16] 2025-11-27 18:45:07,376 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 13:45:16] 2025-11-27 18:45:07,377 | INFO     | traces error code: 0
[2025-11-27 13:45:16] 2025-11-27 18:45:07,377 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 13:45:16] 2025-11-27 18:45:14,588 | INFO     | PID=601720 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 13:45:16] 2025-11-27 18:45:14,589 | INFO     | .. there are 13 such processes running
[2025-11-27 13:45:16] 2025-11-27 18:45:14,590 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 13:45:16] 2025-11-27 18:45:14,590 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 13:45:16] 2025-11-27 18:45:14,590 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 13:45:16] 2025-11-27 18:45:14,590 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 13:45:16] 2025-11-27 18:45:14,594 | INFO     | [monitor] control thread has ended
[2025-11-27 13:45:16] 2025-11-27 18:45:15,999 [wrapper] ==== pilot stdout END ====
[2025-11-27 13:45:16] 2025-11-27 18:45:16,029 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 13:45:16] 2025-11-27 18:45:16,081 [wrapper] pilotpid: 601720
[2025-11-27 13:45:16] 2025-11-27 18:45:16,130 [wrapper] Pilot exit status: 0
[2025-11-27 13:45:16] 2025-11-27 18:45:16,364 [wrapper] pandaids: 6896714097
[2025-11-27 13:45:16] 2025-11-27 18:45:16,487 [wrapper] cleanup supervisor_pilot 2931412 601721
[2025-11-27 13:45:16] 2025-11-27 18:45:16,490 [wrapper] Test setup, not cleaning
[2025-11-27 13:45:16] 2025-11-27 18:45:16,506 [wrapper] apfmon messages muted
[2025-11-27 13:45:16] 2025-11-27 18:45:16,520 [wrapper] ==== wrapper stdout END ====
[2025-11-27 13:45:16] 2025-11-27 18:45:16,534 [wrapper] ==== wrapper stderr END ====
[2025-11-27 13:45:16]  *** Error codes and diagnostics ***
[2025-11-27 13:45:16]     "exeErrorCode": 0,
[2025-11-27 13:45:16]     "exeErrorDiag": "",
[2025-11-27 13:45:16]     "pilotErrorCode": 0,
[2025-11-27 13:45:16]     "pilotErrorDiag": "",
[2025-11-27 13:45:16]  *** Listing of results directory ***
[2025-11-27 13:45:17] total 1325012
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-27 13:45:17] -rwx------. 1 boincer umatlas     36292 Nov 25 01:27 runpilot2-wrapper.sh
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:27 queuedata.json
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas       100 Nov 26 19:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 13:45:17] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 19:31 run_atlas
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas       105 Nov 26 19:31 job.xml
[2025-11-27 13:45:17] -rw-r--r--. 2 boincer umatlas 411830424 Nov 26 19:31 EVNT.47483658._002119.pool.root.1
[2025-11-27 13:45:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:31 start_atlas.sh
[2025-11-27 13:45:17] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 19:31 shared
[2025-11-27 13:45:17] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 19:31 input.tar.gz
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas         0 Nov 26 19:31 boinc_lockfile
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 19:31 pandaJob.out
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas        57 Nov 26 19:31 setup.sh.local
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas    991546 Nov 26 19:32 agis_schedconf.cvmfs.json
[2025-11-27 13:45:17] drwx------. 5 boincer umatlas      4096 Nov 26 19:32 pilot3
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas       533 Nov 27 13:12 boinc_task_state.xml
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 13:37 init_data.xml
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas 918987207 Nov 27 13:43 HITS.47556161._001027.pool.root.1
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas      1058 Nov 27 13:44 memory_monitor_summary.json
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas   1516240 Nov 27 13:44 agis_ddmendpoints.agis.ALL.json
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas   2344145 Nov 27 13:44 log.47556161._001027.job.log.tgz.1
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas      8624 Nov 27 13:44 heartbeat.json
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas        29 Nov 27 13:45 wrapper_checkpoint.txt
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas        95 Nov 27 13:45 pilot_heartbeat.json
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas       822 Nov 27 13:45 pilotlog.txt
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas   8691083 Nov 27 13:45 log.47556161._001027.job.log.1
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas       353 Nov 27 13:45 output.list
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas       620 Nov 27 13:45 runtime_log
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas  11059200 Nov 27 13:45 result.tar.gz
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas      9353 Nov 27 13:45 runtime_log.err
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas       662 Nov 27 13:45 OzxNDmTh1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmfCMKDm25oCHm.diag
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 13:45 boinc_mmap_file
[2025-11-27 13:45:17] -rw-r--r--. 1 boincer umatlas     21343 Nov 27 13:45 stderr.txt
[2025-11-27 13:45:17] HITS file was successfully produced:
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas 918987207 Nov 27 13:43 shared/HITS.pool.root.1
[2025-11-27 13:45:17]  *** Contents of shared directory: ***
[2025-11-27 13:45:17] total 1311036
[2025-11-27 13:45:17] -rw-r--r--. 2 boincer umatlas 411830424 Nov 26 19:31 ATLAS.root_0
[2025-11-27 13:45:17] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 19:31 start_atlas.sh
[2025-11-27 13:45:17] -rw-r--r--. 2 boincer umatlas    590099 Nov 26 19:31 input.tar.gz
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas 918987207 Nov 27 13:43 HITS.pool.root.1
[2025-11-27 13:45:17] -rw-------. 1 boincer umatlas  11059200 Nov 27 13:45 result.tar.gz
13:45:18 (597864): run_atlas exited; CPU time 243386.097731
13:45:18 (597864): called boinc_finish(0)

</stderr_txt>
]]>

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