Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:07 (344933): wrapper (7.7.26015): starting
00:01:07 (344933): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:07] Arguments: --nthreads 9
[2025-11-26 00:01:07] Threads: 9
[2025-11-26 00:01:07] Checking for CVMFS
[2025-11-26 00:01:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:08] 2.13.2.0 6914 35393 270812 153309 1 547 28468168 40960001 25366 16776704 0 133779306 99.627 129059566 36844 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:01:08] CVMFS is ok
[2025-11-26 00:01:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:08] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:08] Checking for apptainer binary...
[2025-11-26 00:01:08] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:08] Running /usr/bin/apptainer --version
[2025-11-26 00:01:08] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:08] c-212-1.aglt2.org
[2025-11-26 00:01:08] apptainer works
[2025-11-26 00:01:08] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:08] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:08] Starting ATLAS job with PandaID=6896713875
[2025-11-26 00:01:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:40:04 (344933): BOINC client no longer exists - exiting
23:40:04 (344933): timer handler: client dead, exiting
23:45:28 (1477568): wrapper (7.7.26015): starting
23:45:28 (1477568): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 23:45:28] Arguments: --nthreads 9
[2025-11-26 23:45:28] Threads: 9
[2025-11-26 23:45:28] This job has been restarted, cleaning up previous attempt
[2025-11-26 23:45:28] Checking for CVMFS
[2025-11-26 23:45:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 23:45:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 23:45:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 23:45:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 23:45:28] 2.13.2.0 6914 36817 264160 153347 0 310 35259091 40960001 24511 16776704 0 142726935 99.622 142391741 37167 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 23:45:28] CVMFS is ok
[2025-11-26 23:45:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 23:45:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 23:45:29] Further information can be found at the LHC@home message board.
[2025-11-26 23:45:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 23:45:29] Checking for apptainer binary...
[2025-11-26 23:45:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 23:45:29] Running /usr/bin/apptainer --version
[2025-11-26 23:45:29] apptainer version 1.4.4-1.el9
[2025-11-26 23:45:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 23:45:29] c-212-1.aglt2.org
[2025-11-26 23:45:29] apptainer works
[2025-11-26 23:45:29] Set ATHENA_PROC_NUMBER=9
[2025-11-26 23:45:29] Set ATHENA_CORE_NUMBER=9
[2025-11-26 23:45:29] Starting ATLAS job with PandaID=6896713875
[2025-11-26 23:45:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:09:07]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:09:07] 2025-11-27 15:08:03,673 | INFO     | sum of square deviations: 70688589831.06386
[2025-11-27 10:09:07] 2025-11-27 15:08:03,689 | INFO     | sum of deviations: 769469472073.98
[2025-11-27 10:09:07] 2025-11-27 15:08:03,689 | INFO     | mean x: 1764237407.3617022
[2025-11-27 10:09:07] 2025-11-27 15:08:03,689 | INFO     | mean y: 3046275.0589198037
[2025-11-27 10:09:07] 2025-11-27 15:08:03,690 | INFO     | intersect: -19201281180.05203
[2025-11-27 10:09:07] 2025-11-27 15:08:03,690 | INFO     | chi2: 8.62010467956375
[2025-11-27 10:09:07] 2025-11-27 15:08:03,695 | INFO     | sum of square deviations: 68967538219.538
[2025-11-27 10:09:07] 2025-11-27 15:08:03,706 | INFO     | sum of deviations: 1007924914811.0896
[2025-11-27 10:09:07] 2025-11-27 15:08:03,706 | INFO     | mean x: 1764237254.9141915
[2025-11-27 10:09:07] 2025-11-27 15:08:03,706 | INFO     | mean y: 3067387.0594059406
[2025-11-27 10:09:07] 2025-11-27 15:08:03,706 | INFO     | intersect: -25780347981.566597
[2025-11-27 10:09:07] 2025-11-27 15:08:03,712 | INFO     | chi2: 4.734551771198596
[2025-11-27 10:09:07] 2025-11-27 15:08:03,712 | INFO     | current chi2=4.734551771198596 (change=45.07547243105864 %)
[2025-11-27 10:09:07] 2025-11-27 15:08:03,713 | INFO     | sum of square deviations: 67274673179.616806
[2025-11-27 10:09:07] 2025-11-27 15:08:03,730 | INFO     | sum of deviations: 1172694131689.5435
[2025-11-27 10:09:07] 2025-11-27 15:08:03,730 | INFO     | mean x: 1764237102.467554
[2025-11-27 10:09:07] 2025-11-27 15:08:03,730 | INFO     | mean y: 3082195.1048252913
[2025-11-27 10:09:07] 2025-11-27 15:08:03,730 | INFO     | intersect: -30750103204.23373
[2025-11-27 10:09:07] 2025-11-27 15:08:03,735 | INFO     | chi2: 2.5018100212302588
[2025-11-27 10:09:07] 2025-11-27 15:08:03,735 | INFO     | current chi2=2.5018100212302588 (change=47.15846098780958 %)
[2025-11-27 10:09:07] 2025-11-27 15:08:03,736 | INFO     | sum of square deviations: 65609432051.97331
[2025-11-27 10:09:07] 2025-11-27 15:08:03,752 | INFO     | sum of deviations: 1177655939501.9077
[2025-11-27 10:09:07] 2025-11-27 15:08:03,752 | INFO     | mean x: 1764236950.0067115
[2025-11-27 10:09:07] 2025-11-27 15:08:03,752 | INFO     | mean y: 3082637.523489933
[2025-11-27 10:09:07] 2025-11-27 15:08:03,752 | INFO     | intersect: -31664073408.24577
[2025-11-27 10:09:07] 2025-11-27 15:08:03,753 | INFO     | chi2: 2.3962183335883016
[2025-11-27 10:09:07] 2025-11-27 15:08:03,753 | INFO     | current chi2=2.3962183335883016 (change=4.2206117469316355 %)
[2025-11-27 10:09:07] 2025-11-27 15:08:03,753 | INFO     | right removable region: 595
[2025-11-27 10:09:07] 2025-11-27 15:08:03,754 | INFO     | sum of square deviations: 68965315292.8253
[2025-11-27 10:09:07] 2025-11-27 15:08:03,768 | INFO     | sum of deviations: 588379907695.9552
[2025-11-27 10:09:07] 2025-11-27 15:08:03,769 | INFO     | mean x: 1764237559.9075909
[2025-11-27 10:09:07] 2025-11-27 15:08:03,769 | INFO     | mean y: 3062276.2491749176
[2025-11-27 10:09:07] 2025-11-27 15:08:03,769 | INFO     | intersect: -15048589822.26819
[2025-11-27 10:09:07] 2025-11-27 15:08:03,774 | INFO     | chi2: 6.443393200581301
[2025-11-27 10:09:07] 2025-11-27 15:08:03,774 | INFO     | current chi2=6.443393200581301 (change=25.251566656063034 %)
[2025-11-27 10:09:07] 2025-11-27 15:08:03,774 | INFO     | sum of square deviations: 67270634417.78371
[2025-11-27 10:09:07] 2025-11-27 15:08:03,790 | INFO     | sum of deviations: 536911723159.6865
[2025-11-27 10:09:07] 2025-11-27 15:08:03,790 | INFO     | mean x: 1764237712.43594
[2025-11-27 10:09:07] 2025-11-27 15:08:03,790 | INFO     | mean y: 3066906.1996672214
[2025-11-27 10:09:07] 2025-11-27 15:08:03,790 | INFO     | intersect: -14077964415.200672
[2025-11-27 10:09:07] 2025-11-27 15:08:03,791 | INFO     | chi2: 6.370879905354903
[2025-11-27 10:09:07] 2025-11-27 15:08:03,791 | INFO     | current chi2=6.370879905354903 (change=1.1253898833902733 %)
[2025-11-27 10:09:07] 2025-11-27 15:08:03,791 | INFO     | left removable region: 20
[2025-11-27 10:09:07] 2025-11-27 15:08:03,791 | INFO     | sum of square deviations: 58909573321.57226
[2025-11-27 10:09:07] 2025-11-27 15:08:03,806 | INFO     | sum of deviations: 869609413425.2192
[2025-11-27 10:09:07] 2025-11-27 15:08:03,807 | INFO     | mean x: 1764237529.6330435
[2025-11-27 10:09:07] 2025-11-27 15:08:03,807 | INFO     | mean y: 3110973.1147826086
[2025-11-27 10:09:07] 2025-11-27 15:08:03,807 | INFO     | intersect: -26040152910.53546
[2025-11-27 10:09:07] 2025-11-27 15:08:03,813 | INFO     | chi2: 0.06886826139056552
[2025-11-27 10:09:07] 2025-11-27 15:08:03,814 | INFO     | current memory leak: 14.76 B/s (using 575 data points, chi2=0.07)
[2025-11-27 10:09:07] 2025-11-27 15:08:03,815 | INFO     | could have reported an average CPU frequency of 3059 MHz (24 samples)
[2025-11-27 10:09:07] 2025-11-27 15:08:03,815 | INFO     | ..............................
[2025-11-27 10:09:07] 2025-11-27 15:08:03,815 | INFO     | . Timing measurements:
[2025-11-27 10:09:07] 2025-11-27 15:08:03,815 | INFO     | . get job = 0 s
[2025-11-27 10:09:07] 2025-11-27 15:08:03,815 | INFO     | . initial setup = 2 s
[2025-11-27 10:09:07] 2025-11-27 15:08:03,815 | INFO     | . payload setup = 11 s
[2025-11-27 10:09:07] 2025-11-27 15:08:03,815 | INFO     | . stage-in = 0 s
[2025-11-27 10:09:07] 2025-11-27 15:08:03,815 | INFO     | . payload execution = 37274 s
[2025-11-27 10:09:07] 2025-11-27 15:08:03,815 | INFO     | . stage-out = 7 s
[2025-11-27 10:09:07] 2025-11-27 15:08:03,816 | INFO     | . log creation = 1 s
[2025-11-27 10:09:07] 2025-11-27 15:08:03,816 | INFO     | ..............................
[2025-11-27 10:09:07] 2025-11-27 15:08:03,922 | INFO     | time since job start (37334s) is within the limit (172800.0s)
[2025-11-27 10:09:07] 2025-11-27 15:08:03,996 | INFO     | 
[2025-11-27 10:09:07] 2025-11-27 15:08:03,997 | INFO     | job summary report
[2025-11-27 10:09:07] 2025-11-27 15:08:04,000 | INFO     | --------------------------------------------------
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | PanDA job id: 6896713875
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | task id: 47556173
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | errors: (none)
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | pilot state: finished 
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | transexitcode: 0
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | exeerrorcode: 0
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | exeerrordiag: 
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | exitcode: 0
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | exitmsg: OK
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | cpuconsumptiontime: 196256 s
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | nevents: 1000
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | neventsw: 0
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | pid: 1517693
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | pgrp: 1517693
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | corecount: 9
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | event service: False
[2025-11-27 10:09:07] 2025-11-27 15:08:04,001 | INFO     | sizes: {0: 2284256, 7: 2284518, 11: 2284546, 37287: 2325982, 37288: 2325981, 37297: 2335215, 37313: 2335405}
[2025-11-27 10:09:07] 2025-11-27 15:08:04,002 | INFO     | --------------------------------------------------
[2025-11-27 10:09:07] 2025-11-27 15:08:04,002 | INFO     | 
[2025-11-27 10:09:07] 2025-11-27 15:08:04,002 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2025-11-27 10:09:07] 2025-11-27 15:08:04,098 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,098 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,099 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,100 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,100 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,100 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,100 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:09:07] 2025-11-27 15:08:04,100 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,100 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:09:07] 2025-11-27 15:08:04,100 | INFO     | job 6896713875 has completed (purged errors)
[2025-11-27 10:09:07] 2025-11-27 15:08:04,100 | INFO     | overall cleanup function is called
[2025-11-27 10:09:07] 2025-11-27 15:08:05,119 | INFO     | --- collectZombieJob: --- 10, [1517693]
[2025-11-27 10:09:07] 2025-11-27 15:08:05,120 | INFO     | zombie collector waiting for pid 1517693
[2025-11-27 10:09:07] 2025-11-27 15:08:05,120 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:09:07] 2025-11-27 15:08:05,120 | INFO     | collected zombie processes
[2025-11-27 10:09:07] 2025-11-27 15:08:05,120 | INFO     | will attempt to kill all subprocesses of pid=1517693
[2025-11-27 10:09:07] 2025-11-27 15:08:08,853 | INFO     | process IDs to be killed: [1517693] (in reverse order)
[2025-11-27 10:09:07] 2025-11-27 15:08:09,026 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:09:07] 2025-11-27 15:08:09,026 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:09:07] 2025-11-27 15:08:09,072 | INFO     | did not find any defunct processes belonging to 1517693
[2025-11-27 10:09:07] 2025-11-27 15:08:09,112 | INFO     | did not find any defunct processes belonging to 1517693
[2025-11-27 10:09:07] 2025-11-27 15:08:09,121 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:09:07] 2025-11-27 15:08:09,121 | INFO     | ready for new job
[2025-11-27 10:09:07] 2025-11-27 15:08:09,122 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:09:07] 2025-11-27 15:08:09,129 | INFO     | ***************************************
[2025-11-27 10:09:07] 2025-11-27 15:08:09,129 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:09:07] 2025-11-27 15:08:09,129 | INFO     | ***************************************
[2025-11-27 10:09:07] 2025-11-27 15:08:09,129 | INFO     | 
[2025-11-27 10:09:07] 2025-11-27 15:08:09,139 | INFO     | architecture information:
[2025-11-27 10:09:07] 2025-11-27 15:08:09,146 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:09:07] 2025-11-27 15:08:09,184 | INFO     | cat /etc/os-release:
[2025-11-27 10:09:07] NAME="CentOS Linux"
[2025-11-27 10:09:07] VERSION="7 (Core)"
[2025-11-27 10:09:07] ID="centos"
[2025-11-27 10:09:07] ID_LIKE="rhel fedora"
[2025-11-27 10:09:07] VERSION_ID="7"
[2025-11-27 10:09:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:09:07] ANSI_COLOR="0;31"
[2025-11-27 10:09:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:09:07] HOME_URL="https://www.centos.org/"
[2025-11-27 10:09:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:09:07] 
[2025-11-27 10:09:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:09:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:09:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:09:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:09:07] 
[2025-11-27 10:09:07] 2025-11-27 15:08:09,184 | INFO     | ***************************************
[2025-11-27 10:09:07] 2025-11-27 15:08:09,688 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2025-11-27 10:09:07] 2025-11-27 15:08:09,745 | INFO     | sufficient remaining disk space (122378256384 B)
[2025-11-27 10:09:07] 2025-11-27 15:08:09,745 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:09:07] 2025-11-27 15:08:09,746 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:09:07] 2025-11-27 15:08:09,746 | INFO     | update_server=False
[2025-11-27 10:09:07] 2025-11-27 15:08:09,746 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:09:07] 2025-11-27 15:08:09,755 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:09:07] 2025-11-27 15:08:09,816 | INFO     | all data control threads have been joined
[2025-11-27 10:09:07] 2025-11-27 15:08:10,253 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-27 10:09:07] 2025-11-27 15:08:10,254 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-27 10:09:07] 2025-11-27 15:08:10,254 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:09:07] 2025-11-27 15:08:10,254 | INFO     | will abort loop
[2025-11-27 10:09:07] 2025-11-27 15:08:10,296 | INFO     | all payload control threads have been joined
[2025-11-27 10:09:07] 2025-11-27 15:08:10,752 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:10,761 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:10,823 | INFO     | [data] control thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:10,953 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:09:07] 2025-11-27 15:08:10,959 | INFO     | all job control threads have been joined
[2025-11-27 10:09:07] 2025-11-27 15:08:11,216 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:11,241 | INFO     | [job] validate thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:11,260 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:11,262 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:11,312 | INFO     | [payload] control thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:11,449 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:11,517 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:11,966 | INFO     | [job] control thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:12,076 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:12,110 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:12,110 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:12,506 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:09:07] 2025-11-27 15:08:12,961 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:16,531 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:09:07] 2025-11-27 15:08:44,935 | INFO     | PID=1491985 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:09:07] 2025-11-27 15:08:44,935 | INFO     | .. there are 31 such processes running
[2025-11-27 10:09:07] 2025-11-27 15:08:44,956 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:09:07] 2025-11-27 15:08:44,956 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:09:07] 2025-11-27 15:08:44,956 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:09:07] 2025-11-27 15:08:58,621 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:09:07] 2025-11-27 15:08:59,696 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140406592517952)>', '<ExcThread(monitor, started 140405936994048)>']
[2025-11-27 10:09:07] 2025-11-27 15:09:00,148 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:09:07] 2025-11-27 15:09:00,149 | INFO     | [monitor] control thread has ended
[2025-11-27 10:09:07] 2025-11-27 15:09:04,730 | INFO     | all workflow threads have been joined
[2025-11-27 10:09:07] 2025-11-27 15:09:04,730 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:09:07] 2025-11-27 15:09:04,730 | INFO     | traces error code: 0
[2025-11-27 10:09:07] 2025-11-27 15:09:04,730 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:09:07] 2025-11-27 15:09:06,715 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:09:07] 2025-11-27 15:09:06,719 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:09:07] 2025-11-27 15:09:06,721 [wrapper] pilotpid: 1491985
[2025-11-27 10:09:07] 2025-11-27 15:09:06,723 [wrapper] Pilot exit status: 0
[2025-11-27 10:09:07] 2025-11-27 15:09:06,832 [wrapper] pandaids: 6896713875 6896713875
[2025-11-27 10:09:07] 2025-11-27 15:09:07,098 [wrapper] cleanup supervisor_pilot 3673785 1491986
[2025-11-27 10:09:07] 2025-11-27 15:09:07,116 [wrapper] Test setup, not cleaning
[2025-11-27 10:09:07] 2025-11-27 15:09:07,120 [wrapper] apfmon messages muted
[2025-11-27 10:09:07] 2025-11-27 15:09:07,123 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:09:07] 2025-11-27 15:09:07,125 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:09:07]  *** Error codes and diagnostics ***
[2025-11-27 10:09:07]     "exeErrorCode": 0,
[2025-11-27 10:09:07]     "exeErrorDiag": "",
[2025-11-27 10:09:07]     "pilotErrorCode": 0,
[2025-11-27 10:09:07]     "pilotErrorDiag": "",
[2025-11-27 10:09:07]  *** Listing of results directory ***
[2025-11-27 10:09:07] total 1706080
[2025-11-27 10:09:07] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-27 10:09:07] -rwx------. 1 boincer umatlas     36292 Nov 25 01:21 runpilot2-wrapper.sh
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:21 queuedata.json
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:09:07] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-27 10:09:07] -rw-r--r--. 3 boincer umatlas 409221621 Nov 26 00:01 EVNT.47483658._003069.pool.root.1
[2025-11-27 10:09:07] -rw-r--r--. 3 boincer umatlas 409221621 Nov 26 00:01 ATLAS.root_0
[2025-11-27 10:09:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 10:09:07] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-27 10:09:07] -rw-r--r--. 2 boincer umatlas    590096 Nov 26 00:01 input.tar.gz
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas      2781 Nov 26 23:45 pandaJob.out
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas        57 Nov 26 23:45 setup.sh.local
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas    991570 Nov 26 23:45 agis_schedconf.cvmfs.json
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas       534 Nov 27 09:54 boinc_task_state.xml
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas      6949 Nov 27 10:03 init_data.xml
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas 912121321 Nov 27 10:04 HITS.47556173._000511.pool.root.1
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas      1063 Nov 27 10:07 memory_monitor_summary.json
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:07 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas   1930211 Nov 27 10:07 log.47556173._000511.job.log.tgz.1
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas      8603 Nov 27 10:08 heartbeat.json
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas        96 Nov 27 10:08 pilot_heartbeat.json
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas      5011 Nov 27 10:09 pilotlog.txt
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas        29 Nov 27 10:09 wrapper_checkpoint.txt
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas   4334926 Nov 27 10:09 log.47556173._000511.job.log.1
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:09 boinc_mmap_file
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas       353 Nov 27 10:09 output.list
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:09 runtime_log
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas   6287360 Nov 27 10:09 result.tar.gz
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas      9423 Nov 27 10:09 runtime_log.err
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas       788 Nov 27 10:09 ayNODmab1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmPCMKDmLclQjm.diag
[2025-11-27 10:09:07] -rw-r--r--. 1 boincer umatlas     23452 Nov 27 10:09 stderr.txt
[2025-11-27 10:09:07] HITS file was successfully produced:
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas 912121321 Nov 27 10:04 shared/HITS.pool.root.1
[2025-11-27 10:09:07]  *** Contents of shared directory: ***
[2025-11-27 10:09:07] total 1297120
[2025-11-27 10:09:07] -rw-r--r--. 3 boincer umatlas 409221621 Nov 26 00:01 ATLAS.root_0
[2025-11-27 10:09:07] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 10:09:07] -rw-r--r--. 2 boincer umatlas    590096 Nov 26 00:01 input.tar.gz
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas 912121321 Nov 27 10:04 HITS.pool.root.1
[2025-11-27 10:09:07] -rw-------. 1 boincer umatlas   6287360 Nov 27 10:09 result.tar.gz
10:09:29 (1477568): run_atlas exited; CPU time 195999.362669
10:09:29 (1477568): called boinc_finish(0)

</stderr_txt>
]]>

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