Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:53 (2508111): wrapper (7.7.26015): starting
00:03:53 (2508111): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:03:53] Arguments: --nthreads 9
[2025-11-26 00:03:53] Threads: 9
[2025-11-26 00:03:53] Checking for CVMFS
[2025-11-26 00:03:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:55] 2.13.3.0 9393 29559 340948 153309 0 344 32541689 32935936 21303 16776704 0 109641947 99.530 130989474 39189 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:55] CVMFS is ok
[2025-11-26 00:03:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:55] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:55] Checking for apptainer binary...
[2025-11-26 00:03:55] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:55] Running /usr/bin/apptainer --version
[2025-11-26 00:03:55] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:55] c6-6-39-1.aglt2.org
[2025-11-26 00:03:55] apptainer works
[2025-11-26 00:03:55] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:55] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:55] Starting ATLAS job with PandaID=6896714092
[2025-11-26 00:03:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 18:20:31]  *** The last 200 lines of the pilot log: ***
[2025-11-26 18:20:31] 2025-11-26 23:19:46,132 | INFO     | time since job start (65714s) is within the limit (172800.0s)
[2025-11-26 18:20:31] 2025-11-26 23:19:46,392 | INFO     | monitor loop #4318: job 0:6896714092 is in state 'finished'
[2025-11-26 18:20:31] 2025-11-26 23:19:46,393 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 18:20:31] 2025-11-26 23:19:46,917 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 18:20:31] 2025-11-26 23:19:46,935 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3065.2296250000004
[2025-11-26 18:20:31] 2025-11-26 23:19:46,950 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6896714092/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 18:20:31] 2025-11-26 23:19:46,951 | INFO     | extracted standard info from prmon json
[2025-11-26 18:20:31] 2025-11-26 23:19:46,951 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 18:20:31] 2025-11-26 23:19:46,951 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 18:20:31] 2025-11-26 23:19:47,000 | INFO     | fitting pss+swap vs Time
[2025-11-26 18:20:31] 2025-11-26 23:19:47,001 | INFO     | sum of square deviations: 386273899092.02216
[2025-11-26 18:20:31] 2025-11-26 23:19:47,024 | INFO     | sum of deviations: 3705131279769.0024
[2025-11-26 18:20:31] 2025-11-26 23:19:47,024 | INFO     | mean x: 1764166358.6802974
[2025-11-26 18:20:31] 2025-11-26 23:19:47,024 | INFO     | mean y: 3093844.6133828997
[2025-11-26 18:20:31] 2025-11-26 23:19:47,024 | INFO     | intersect: -16918753511.95721
[2025-11-26 18:20:31] 2025-11-26 23:19:47,025 | INFO     | chi2: 7.6057658455677055
[2025-11-26 18:20:31] 2025-11-26 23:19:47,027 | INFO     | sum of square deviations: 380914167330.024
[2025-11-26 18:20:31] 2025-11-26 23:19:47,045 | INFO     | sum of deviations: 4074469427525.4326
[2025-11-26 18:20:31] 2025-11-26 23:19:47,046 | INFO     | mean x: 1764166206.1858077
[2025-11-26 18:20:31] 2025-11-26 23:19:47,046 | INFO     | mean y: 3104347.9626517273
[2025-11-26 18:20:31] 2025-11-26 23:19:47,046 | INFO     | intersect: -18867396905.801125
[2025-11-26 18:20:31] 2025-11-26 23:19:47,047 | INFO     | chi2: 4.621286064826736
[2025-11-26 18:20:31] 2025-11-26 23:19:47,047 | INFO     | current chi2=4.621286064826736 (change=39.239701054959355 %)
[2025-11-26 18:20:31] 2025-11-26 23:19:47,048 | INFO     | sum of square deviations: 375604250455.46063
[2025-11-26 18:20:31] 2025-11-26 23:19:47,067 | INFO     | sum of deviations: 4139793391667.145
[2025-11-26 18:20:31] 2025-11-26 23:19:47,067 | INFO     | mean x: 1764166053.6913695
[2025-11-26 18:20:31] 2025-11-26 23:19:47,068 | INFO     | mean y: 3106218.450281426
[2025-11-26 18:20:31] 2025-11-26 23:19:47,068 | INFO     | intersect: -19440984102.729576
[2025-11-26 18:20:31] 2025-11-26 23:19:47,069 | INFO     | chi2: 4.3012337134861225
[2025-11-26 18:20:31] 2025-11-26 23:19:47,069 | INFO     | current chi2=4.3012337134861225 (change=6.925612196496074 %)
[2025-11-26 18:20:31] 2025-11-26 23:19:47,069 | INFO     | right removable region: 1065
[2025-11-26 18:20:31] 2025-11-26 23:19:47,070 | INFO     | sum of square deviations: 380913392630.0237
[2025-11-26 18:20:31] 2025-11-26 23:19:47,089 | INFO     | sum of deviations: 3276827694794.6416
[2025-11-26 18:20:31] 2025-11-26 23:19:47,089 | INFO     | mean x: 1764166511.1858077
[2025-11-26 18:20:31] 2025-11-26 23:19:47,089 | INFO     | mean y: 3106025.4239028944
[2025-11-26 18:20:31] 2025-11-26 23:19:47,089 | INFO     | intersect: -15173230102.24221
[2025-11-26 18:20:31] 2025-11-26 23:19:47,090 | INFO     | chi2: 4.090785723580887
[2025-11-26 18:20:31] 2025-11-26 23:19:47,091 | INFO     | current chi2=4.090785723580887 (change=46.2146770405138 %)
[2025-11-26 18:20:31] 2025-11-26 23:19:47,092 | INFO     | sum of square deviations: 375602897052.60016
[2025-11-26 18:20:31] 2025-11-26 23:19:47,110 | INFO     | sum of deviations: 3120228515383.6943
[2025-11-26 18:20:31] 2025-11-26 23:19:47,111 | INFO     | mean x: 1764166663.6885552
[2025-11-26 18:20:31] 2025-11-26 23:19:47,111 | INFO     | mean y: 3110518.82739212
[2025-11-26 18:20:31] 2025-11-26 23:19:47,111 | INFO     | intersect: -14652269333.47303
[2025-11-26 18:20:31] 2025-11-26 23:19:47,112 | INFO     | chi2: 3.7190840797171463
[2025-11-26 18:20:31] 2025-11-26 23:19:47,112 | INFO     | current chi2=3.7190840797171463 (change=9.086314194388313 %)
[2025-11-26 18:20:31] 2025-11-26 23:19:47,112 | INFO     | left removable region: 20
[2025-11-26 18:20:31] 2025-11-26 23:19:47,114 | INFO     | sum of square deviations: 353839908363.104
[2025-11-26 18:20:31] 2025-11-26 23:19:47,131 | INFO     | sum of deviations: 3339611314250.722
[2025-11-26 18:20:31] 2025-11-26 23:19:47,132 | INFO     | mean x: 1764166633.1904306
[2025-11-26 18:20:31] 2025-11-26 23:19:47,132 | INFO     | mean y: 3129218.15215311
[2025-11-26 18:20:31] 2025-11-26 23:19:47,132 | INFO     | intersect: -16647425762.154034
[2025-11-26 18:20:31] 2025-11-26 23:19:47,133 | INFO     | chi2: 0.23209665117679087
[2025-11-26 18:20:31] 2025-11-26 23:19:47,133 | INFO     | current memory leak: 9.44 B/s (using 1045 data points, chi2=0.23)
[2025-11-26 18:20:31] 2025-11-26 23:19:47,134 | INFO     | could have reported an average CPU frequency of 3029 MHz (39 samples)
[2025-11-26 18:20:31] 2025-11-26 23:19:47,134 | INFO     | ..............................
[2025-11-26 18:20:31] 2025-11-26 23:19:47,134 | INFO     | . Timing measurements:
[2025-11-26 18:20:31] 2025-11-26 23:19:47,134 | INFO     | . get job = 0 s
[2025-11-26 18:20:31] 2025-11-26 23:19:47,135 | INFO     | . initial setup = 3 s
[2025-11-26 18:20:31] 2025-11-26 23:19:47,135 | INFO     | . payload setup = 31 s
[2025-11-26 18:20:31] 2025-11-26 23:19:47,135 | INFO     | . stage-in = 0 s
[2025-11-26 18:20:31] 2025-11-26 23:19:47,135 | INFO     | . payload execution = 65613 s
[2025-11-26 18:20:31] 2025-11-26 23:19:47,135 | INFO     | . stage-out = 5 s
[2025-11-26 18:20:31] 2025-11-26 23:19:47,135 | INFO     | . log creation = 1 s
[2025-11-26 18:20:31] 2025-11-26 23:19:47,135 | INFO     | ..............................
[2025-11-26 18:20:31] 2025-11-26 23:19:47,215 | INFO     | 
[2025-11-26 18:20:31] 2025-11-26 23:19:47,215 | INFO     | job summary report
[2025-11-26 18:20:31] 2025-11-26 23:19:47,215 | INFO     | --------------------------------------------------
[2025-11-26 18:20:31] 2025-11-26 23:19:47,215 | INFO     | PanDA job id: 6896714092
[2025-11-26 18:20:31] 2025-11-26 23:19:47,215 | INFO     | task id: 47556161
[2025-11-26 18:20:31] 2025-11-26 23:19:47,215 | INFO     | errors: (none)
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | pilot state: finished 
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | transexitcode: 0
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | exeerrorcode: 0
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | exeerrordiag: 
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | exitcode: 0
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | exitmsg: OK
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | cpuconsumptiontime: 238933 s
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | nevents: 1000
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | neventsw: 0
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | pid: 2534664
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | pgrp: 2534664
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | corecount: 9
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | event service: False
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | sizes: {0: 2283986, 1: 2284241, 2: 2284269, 12: 2284269, 20: 2284559, 23: 2284587, 65648: 2340749, 65654: 2349771, 65655: 2349827, 65672: 2350073}
[2025-11-26 18:20:31] 2025-11-26 23:19:47,216 | INFO     | --------------------------------------------------
[2025-11-26 18:20:31] 2025-11-26 23:19:47,217 | INFO     | 
[2025-11-26 18:20:31] 2025-11-26 23:19:47,217 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 18:20:31] 2025-11-26 23:19:47,237 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,238 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,238 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,238 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,238 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,238 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,238 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,238 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,238 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,238 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,238 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,238 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,239 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,239 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,239 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,239 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,239 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,239 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 18:20:31] 2025-11-26 23:19:47,239 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,239 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 18:20:31] 2025-11-26 23:19:47,239 | INFO     | job 6896714092 has completed (purged errors)
[2025-11-26 18:20:31] 2025-11-26 23:19:47,239 | INFO     | overall cleanup function is called
[2025-11-26 18:20:31] 2025-11-26 23:19:48,258 | INFO     | --- collectZombieJob: --- 10, [2534664]
[2025-11-26 18:20:31] 2025-11-26 23:19:48,258 | INFO     | zombie collector waiting for pid 2534664
[2025-11-26 18:20:31] 2025-11-26 23:19:48,258 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 18:20:31] 2025-11-26 23:19:48,259 | INFO     | collected zombie processes
[2025-11-26 18:20:31] 2025-11-26 23:19:48,259 | INFO     | will attempt to kill all subprocesses of pid=2534664
[2025-11-26 18:20:31] 2025-11-26 23:19:48,872 | INFO     | process IDs to be killed: [2534664] (in reverse order)
[2025-11-26 18:20:31] 2025-11-26 23:19:49,034 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 18:20:31] 2025-11-26 23:19:49,036 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 18:20:31] 2025-11-26 23:19:49,104 | INFO     | did not find any defunct processes belonging to 2534664
[2025-11-26 18:20:31] 2025-11-26 23:19:49,184 | INFO     | did not find any defunct processes belonging to 2534664
[2025-11-26 18:20:31] 2025-11-26 23:19:49,190 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 18:20:31] 2025-11-26 23:19:49,190 | INFO     | ready for new job
[2025-11-26 18:20:31] 2025-11-26 23:19:49,190 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 18:20:31] 2025-11-26 23:19:49,195 | INFO     | ***************************************
[2025-11-26 18:20:31] 2025-11-26 23:19:49,196 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 18:20:31] 2025-11-26 23:19:49,196 | INFO     | ***************************************
[2025-11-26 18:20:31] 2025-11-26 23:19:49,196 | INFO     | 
[2025-11-26 18:20:31] 2025-11-26 23:19:49,199 | INFO     | architecture information:
[2025-11-26 18:20:31] 2025-11-26 23:19:49,199 | INFO     | executing command: cat /etc/os-release
[2025-11-26 18:20:31] 2025-11-26 23:19:49,258 | INFO     | cat /etc/os-release:
[2025-11-26 18:20:31] NAME="CentOS Linux"
[2025-11-26 18:20:31] VERSION="7 (Core)"
[2025-11-26 18:20:31] ID="centos"
[2025-11-26 18:20:31] ID_LIKE="rhel fedora"
[2025-11-26 18:20:31] VERSION_ID="7"
[2025-11-26 18:20:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 18:20:31] ANSI_COLOR="0;31"
[2025-11-26 18:20:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 18:20:31] HOME_URL="https://www.centos.org/"
[2025-11-26 18:20:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 18:20:31] 
[2025-11-26 18:20:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 18:20:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 18:20:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 18:20:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 18:20:31] 
[2025-11-26 18:20:31] 2025-11-26 23:19:49,258 | INFO     | ***************************************
[2025-11-26 18:20:31] 2025-11-26 23:19:49,761 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 18:20:31] 2025-11-26 23:19:49,799 | INFO     | sufficient remaining disk space (71647100928 B)
[2025-11-26 18:20:31] 2025-11-26 23:19:49,799 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 18:20:31] 2025-11-26 23:19:49,799 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 18:20:31] 2025-11-26 23:19:49,800 | INFO     | update_server=False
[2025-11-26 18:20:31] 2025-11-26 23:19:49,800 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 18:20:31] 2025-11-26 23:19:49,800 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 18:20:31] 2025-11-26 23:19:49,914 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:20:31] 2025-11-26 23:19:49,914 | INFO     | aborting loop
[2025-11-26 18:20:31] 2025-11-26 23:19:50,115 | INFO     | all job control threads have been joined
[2025-11-26 18:20:31] 2025-11-26 23:19:50,184 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 18:20:31] 2025-11-26 23:19:50,509 | INFO     | all payload control threads have been joined
[2025-11-26 18:20:31] 2025-11-26 23:19:50,765 | INFO     | all data control threads have been joined
[2025-11-26 18:20:31] 2025-11-26 23:19:50,806 | INFO     | [job] retrieve thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:50,879 | INFO     | [data] copytool_in thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:50,920 | INFO     | [job] job monitor thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:50,981 | INFO     | [job] validate thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:51,064 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:51,144 | INFO     | [job] control thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:51,468 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:51,509 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:51,515 | INFO     | [payload] control thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:51,547 | INFO     | [payload] validate_post thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:51,770 | INFO     | [data] control thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:51,806 | INFO     | [data] copytool_out thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:52,140 | INFO     | [payload] failed_post thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:52,244 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 18:20:31] 2025-11-26 23:19:52,264 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:53,250 | INFO     | [job] queue monitor thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:19:54,213 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 18:20:31] 2025-11-26 23:20:20,004 | INFO     | PID=2514982 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 18:20:31] 2025-11-26 23:20:20,004 | INFO     | .. there are 32 such processes running
[2025-11-26 18:20:31] 2025-11-26 23:20:20,005 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 18:20:31] 2025-11-26 23:20:20,005 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 18:20:31] 2025-11-26 23:20:20,005 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 18:20:31] 2025-11-26 23:20:25,142 | INFO     | [monitor] cgroup control has ended
[2025-11-26 18:20:31] 2025-11-26 23:20:25,872 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139746071078720)>', '<ExcThread(monitor, started 139745719990016)>']
[2025-11-26 18:20:31] 2025-11-26 23:20:26,056 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 18:20:31] 2025-11-26 23:20:26,057 | INFO     | [monitor] control thread has ended
[2025-11-26 18:20:31] 2025-11-26 23:20:30,898 | INFO     | all workflow threads have been joined
[2025-11-26 18:20:31] 2025-11-26 23:20:30,899 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 18:20:31] 2025-11-26 23:20:30,899 | INFO     | traces error code: 0
[2025-11-26 18:20:31] 2025-11-26 23:20:30,899 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 18:20:31] 2025-11-26 23:20:31,137 [wrapper] ==== pilot stdout END ====
[2025-11-26 18:20:31] 2025-11-26 23:20:31,140 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 18:20:31] 2025-11-26 23:20:31,143 [wrapper] pilotpid: 2514982
[2025-11-26 18:20:31] 2025-11-26 23:20:31,145 [wrapper] Pilot exit status: 0
[2025-11-26 18:20:31] 2025-11-26 23:20:31,160 [wrapper] pandaids: 6896714092
[2025-11-26 18:20:31] 2025-11-26 23:20:31,249 [wrapper] cleanup supervisor_pilot 2078769 2514983
[2025-11-26 18:20:31] 2025-11-26 23:20:31,252 [wrapper] Test setup, not cleaning
[2025-11-26 18:20:31] 2025-11-26 23:20:31,255 [wrapper] apfmon messages muted
[2025-11-26 18:20:31] 2025-11-26 23:20:31,261 [wrapper] ==== wrapper stdout END ====
[2025-11-26 18:20:31] 2025-11-26 23:20:31,264 [wrapper] ==== wrapper stderr END ====
[2025-11-26 18:20:31]  *** Error codes and diagnostics ***
[2025-11-26 18:20:31]     "exeErrorCode": 0,
[2025-11-26 18:20:31]     "exeErrorDiag": "",
[2025-11-26 18:20:31]     "pilotErrorCode": 0,
[2025-11-26 18:20:31]     "pilotErrorDiag": "",
[2025-11-26 18:20:31]  *** Listing of results directory ***
[2025-11-26 18:20:31] total 1340836
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:21 queuedata.json
[2025-11-26 18:20:31] -rwx------. 1 boincer umatlas     36292 Nov 25 01:23 runpilot2-wrapper.sh
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 18:20:31] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:03 run_atlas
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:03 job.xml
[2025-11-26 18:20:31] -rw-r--r--. 2 boincer umatlas 411830424 Nov 26 00:03 EVNT.47483658._002119.pool.root.1
[2025-11-26 18:20:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 18:20:31] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:03 shared
[2025-11-26 18:20:31] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:03 input.tar.gz
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:03 boinc_lockfile
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:03 pandaJob.out
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 18:20:31] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas       533 Nov 26 18:09 boinc_task_state.xml
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas 934976703 Nov 26 18:18 HITS.47556161._001022.pool.root.1
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas      1058 Nov 26 18:19 memory_monitor_summary.json
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas   1516240 Nov 26 18:19 agis_ddmendpoints.agis.ALL.json
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas   2348151 Nov 26 18:19 log.47556161._001022.job.log.tgz.1
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas      8618 Nov 26 18:19 heartbeat.json
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 18:19 init_data.xml
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas        95 Nov 26 18:20 pilot_heartbeat.json
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas        29 Nov 26 18:20 wrapper_checkpoint.txt
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 18:20 boinc_mmap_file
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas      4824 Nov 26 18:20 pilotlog.txt
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas   8794526 Nov 26 18:20 log.47556161._001022.job.log.1
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas       353 Nov 26 18:20 output.list
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas       620 Nov 26 18:20 runtime_log
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas  11161600 Nov 26 18:20 result.tar.gz
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 18:20 runtime_log.err
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas       661 Nov 26 18:20 186KDmed1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmWCMKDmbVvP1m.diag
[2025-11-26 18:20:31] -rw-r--r--. 1 boincer umatlas     21372 Nov 26 18:20 stderr.txt
[2025-11-26 18:20:31] HITS file was successfully produced:
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas 934976703 Nov 26 18:18 shared/HITS.pool.root.1
[2025-11-26 18:20:31]  *** Contents of shared directory: ***
[2025-11-26 18:20:31] total 1326748
[2025-11-26 18:20:31] -rw-r--r--. 2 boincer umatlas 411830424 Nov 26 00:03 ATLAS.root_0
[2025-11-26 18:20:31] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:03 start_atlas.sh
[2025-11-26 18:20:31] -rw-r--r--. 2 boincer umatlas    590101 Nov 26 00:03 input.tar.gz
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas 934976703 Nov 26 18:18 HITS.pool.root.1
[2025-11-26 18:20:31] -rw-------. 1 boincer umatlas  11161600 Nov 26 18:20 result.tar.gz
18:20:54 (2508111): run_atlas exited; CPU time 240525.297047
18:20:54 (2508111): called boinc_finish(0)

</stderr_txt>
]]>

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