Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:21:59 (4165685): wrapper (7.7.26015): starting
10:21:59 (4165685): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 10:21:59] Arguments: --nthreads 8
[2025-11-26 10:21:59] Threads: 8
[2025-11-26 10:21:59] Checking for CVMFS
[2025-11-26 10:21:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 10:21:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 10:21:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 10:21:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 10:21:59] 2.13.3.0 9358 28529 228332 153326 2 132 24604606 32935937 25684 16776704 0 149718179 99.782 82674825 33178 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 10:21:59] CVMFS is ok
[2025-11-26 10:21:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 10:21:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 10:21:59] Further information can be found at the LHC@home message board.
[2025-11-26 10:21:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 10:21:59] Checking for apptainer binary...
[2025-11-26 10:21:59] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 10:21:59] Running /usr/bin/apptainer --version
[2025-11-26 10:22:00] apptainer version 1.4.4-1.el9
[2025-11-26 10:22:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 10:22:00] c-6-6.aglt2.org
[2025-11-26 10:22:00] apptainer works
[2025-11-26 10:22:00] Set ATHENA_PROC_NUMBER=8
[2025-11-26 10:22:00] Set ATHENA_CORE_NUMBER=8
[2025-11-26 10:22:00] Starting ATLAS job with PandaID=6894239155
[2025-11-26 10:22:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 17:28:12]  *** The last 200 lines of the pilot log: ***
[2025-11-26 17:28:12] 2025-11-26 21:39:54,445 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:28:12] 2025-11-26 21:39:54,759 | INFO     | time since job start (22656s) is within the limit (172800.0s)
[2025-11-26 17:28:12] 2025-11-26 21:39:56,766 | INFO     | time since job start (22658s) is within the limit (172800.0s)
[2025-11-26 17:28:12] 2025-11-26 21:39:56,949 | INFO     | monitor loop #1519: job 0:6894239155 is in state 'finished'
[2025-11-26 17:28:12] 2025-11-26 21:39:56,949 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 17:28:12] 2025-11-26 21:39:58,487 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 17:28:12] 2025-11-26 21:39:58,511 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.178450000001
[2025-11-26 17:28:12] 2025-11-26 21:39:58,523 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6894239155/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 17:28:12] 2025-11-26 21:39:58,525 | INFO     | extracted standard info from prmon json
[2025-11-26 17:28:12] 2025-11-26 21:39:58,525 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 17:28:12] 2025-11-26 21:39:58,525 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 17:28:12] 2025-11-26 21:39:58,526 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-26 17:28:12] 2025-11-26 21:39:58,526 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-26 17:28:12] 2025-11-26 21:39:58,539 | INFO     | fitting pss+swap vs Time
[2025-11-26 17:28:12] 2025-11-26 21:39:58,540 | INFO     | sum of square deviations: 15834192980.867886
[2025-11-26 17:28:12] 2025-11-26 21:39:58,545 | INFO     | sum of deviations: -112609933352.54715
[2025-11-26 17:28:12] 2025-11-26 21:39:58,545 | INFO     | mean x: 1764181862.018868
[2025-11-26 17:28:12] 2025-11-26 21:39:58,545 | INFO     | mean y: 2618906.7924528304
[2025-11-26 17:28:12] 2025-11-26 21:39:58,545 | INFO     | intersect: 12549163094.03074
[2025-11-26 17:28:12] 2025-11-26 21:39:58,547 | INFO     | chi2: 2.758635551909304
[2025-11-26 17:28:12] 2025-11-26 21:39:58,548 | INFO     | sum of square deviations: 15202583273.366106
[2025-11-26 17:28:12] 2025-11-26 21:39:58,552 | INFO     | sum of deviations: -87650779128.61205
[2025-11-26 17:28:12] 2025-11-26 21:39:58,552 | INFO     | mean x: 1764181709.5191257
[2025-11-26 17:28:12] 2025-11-26 21:39:58,552 | INFO     | mean y: 2624870.087431694
[2025-11-26 17:28:12] 2025-11-26 21:39:58,552 | INFO     | intersect: 10174047619.976439
[2025-11-26 17:28:12] 2025-11-26 21:39:58,553 | INFO     | chi2: 2.0865942306554293
[2025-11-26 17:28:12] 2025-11-26 21:39:58,553 | INFO     | current chi2=2.0865942306554293 (change=24.36136664695495 %)
[2025-11-26 17:28:12] 2025-11-26 21:39:58,553 | INFO     | right removable region: 365
[2025-11-26 17:28:12] 2025-11-26 21:39:58,554 | INFO     | sum of square deviations: 15202579003.366102
[2025-11-26 17:28:12] 2025-11-26 21:39:58,558 | INFO     | sum of deviations: -172073682698.94537
[2025-11-26 17:28:12] 2025-11-26 21:39:58,558 | INFO     | mean x: 1764182014.5191257
[2025-11-26 17:28:12] 2025-11-26 21:39:58,558 | INFO     | mean y: 2633176.9207650274
[2025-11-26 17:28:12] 2025-11-26 21:39:58,558 | INFO     | intersect: 19970909357.056717
[2025-11-26 17:28:12] 2025-11-26 21:39:58,560 | INFO     | chi2: 1.2657494812141754
[2025-11-26 17:28:12] 2025-11-26 21:39:58,560 | INFO     | current chi2=1.2657494812141754 (change=54.11682850465237 %)
[2025-11-26 17:28:12] 2025-11-26 21:39:58,561 | INFO     | sum of square deviations: 14587988600.864233
[2025-11-26 17:28:12] 2025-11-26 21:39:58,565 | INFO     | sum of deviations: -174523882340.82825
[2025-11-26 17:28:12] 2025-11-26 21:39:58,566 | INFO     | mean x: 1764182167.0193906
[2025-11-26 17:28:12] 2025-11-26 21:39:58,566 | INFO     | mean y: 2633784.6897506923
[2025-11-26 17:28:12] 2025-11-26 21:39:58,566 | INFO     | intersect: 21108485274.485893
[2025-11-26 17:28:12] 2025-11-26 21:39:58,566 | INFO     | chi2: 1.246974911517062
[2025-11-26 17:28:12] 2025-11-26 21:39:58,567 | INFO     | current chi2=1.246974911517062 (change=1.4832769024012356 %)
[2025-11-26 17:28:12] 2025-11-26 21:39:58,567 | INFO     | left removable region: 20
[2025-11-26 17:28:12] 2025-11-26 21:39:58,567 | INFO     | sum of square deviations: 12733037158.927536
[2025-11-26 17:28:12] 2025-11-26 21:39:58,571 | INFO     | sum of deviations: -125980394494.97115
[2025-11-26 17:28:12] 2025-11-26 21:39:58,571 | INFO     | mean x: 1764182289.0144928
[2025-11-26 17:28:12] 2025-11-26 21:39:58,571 | INFO     | mean y: 2633971.1942028985
[2025-11-26 17:28:12] 2025-11-26 21:39:58,571 | INFO     | intersect: 17457415415.482914
[2025-11-26 17:28:12] 2025-11-26 21:39:58,572 | INFO     | chi2: 0.523820166802631
[2025-11-26 17:28:12] 2025-11-26 21:39:58,572 | INFO     | current memory leak: -9.89 B/s (using 345 data points, chi2=0.52)
[2025-11-26 17:28:12] 2025-11-26 21:39:58,573 | INFO     | could have reported an average CPU frequency of 2600 MHz (16 samples)
[2025-11-26 17:28:12] 2025-11-26 21:39:58,573 | INFO     | ..............................
[2025-11-26 17:28:12] 2025-11-26 21:39:58,573 | INFO     | . Timing measurements:
[2025-11-26 17:28:12] 2025-11-26 21:39:58,573 | INFO     | . get job = 0 s
[2025-11-26 17:28:12] 2025-11-26 21:39:58,573 | INFO     | . initial setup = 3 s
[2025-11-26 17:28:12] 2025-11-26 21:39:58,573 | INFO     | . payload setup = 11 s
[2025-11-26 17:28:12] 2025-11-26 21:39:58,574 | INFO     | . stage-in = 0 s
[2025-11-26 17:28:12] 2025-11-26 21:39:58,574 | INFO     | . payload execution = 22600 s
[2025-11-26 17:28:12] 2025-11-26 21:39:58,574 | INFO     | . stage-out = 3 s
[2025-11-26 17:28:12] 2025-11-26 21:39:58,574 | INFO     | . log creation = 0 s
[2025-11-26 17:28:12] 2025-11-26 21:39:58,574 | INFO     | ..............................
[2025-11-26 17:28:12] 2025-11-26 21:39:58,779 | INFO     | time since job start (22660s) is within the limit (172800.0s)
[2025-11-26 17:28:12] 2025-11-26 21:39:59,127 | INFO     | 
[2025-11-26 17:28:12] 2025-11-26 21:39:59,127 | INFO     | job summary report
[2025-11-26 17:28:12] 2025-11-26 21:39:59,127 | INFO     | --------------------------------------------------
[2025-11-26 17:28:12] 2025-11-26 21:39:59,127 | INFO     | PanDA job id: 6894239155
[2025-11-26 17:28:12] 2025-11-26 21:39:59,127 | INFO     | task id: 47523939
[2025-11-26 17:28:12] 2025-11-26 21:39:59,127 | INFO     | errors: (none)
[2025-11-26 17:28:12] 2025-11-26 21:39:59,127 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 17:28:12] 2025-11-26 21:39:59,127 | INFO     | pilot state: finished 
[2025-11-26 17:28:12] 2025-11-26 21:39:59,127 | INFO     | transexitcode: 0
[2025-11-26 17:28:12] 2025-11-26 21:39:59,128 | INFO     | exeerrorcode: 0
[2025-11-26 17:28:12] 2025-11-26 21:39:59,128 | INFO     | exeerrordiag: 
[2025-11-26 17:28:12] 2025-11-26 21:39:59,128 | INFO     | exitcode: 0
[2025-11-26 17:28:12] 2025-11-26 21:39:59,128 | INFO     | exitmsg: OK
[2025-11-26 17:28:12] 2025-11-26 21:39:59,128 | INFO     | cpuconsumptiontime: 136465 s
[2025-11-26 17:28:12] 2025-11-26 21:39:59,128 | INFO     | nevents: 400
[2025-11-26 17:28:12] 2025-11-26 21:39:59,128 | INFO     | neventsw: 0
[2025-11-26 17:28:12] 2025-11-26 21:39:59,128 | INFO     | pid: 4184407
[2025-11-26 17:28:12] 2025-11-26 21:39:59,128 | INFO     | pgrp: 4184407
[2025-11-26 17:28:12] 2025-11-26 21:39:59,128 | INFO     | corecount: 8
[2025-11-26 17:28:12] 2025-11-26 21:39:59,128 | INFO     | event service: False
[2025-11-26 17:28:12] 2025-11-26 21:39:59,129 | INFO     | sizes: {0: 2283775, 1: 2283974, 8: 2284236, 12: 2284264, 22615: 2319376, 22616: 2319375, 22620: 2328557, 22622: 2328613, 22641: 2328807}
[2025-11-26 17:28:12] 2025-11-26 21:39:59,129 | INFO     | --------------------------------------------------
[2025-11-26 17:28:12] 2025-11-26 21:39:59,129 | INFO     | 
[2025-11-26 17:28:12] 2025-11-26 21:39:59,129 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-26 17:28:12] 2025-11-26 21:39:59,183 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,184 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,185 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,185 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,189 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,190 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,191 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,193 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,193 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,193 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,193 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,193 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,194 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,196 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,196 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,196 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,197 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,197 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 17:28:12] 2025-11-26 21:39:59,197 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,197 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 17:28:12] 2025-11-26 21:39:59,198 | INFO     | job 6894239155 has completed (purged errors)
[2025-11-26 17:28:12] 2025-11-26 21:39:59,198 | INFO     | overall cleanup function is called
[2025-11-26 17:28:12] 2025-11-26 21:40:00,235 | INFO     | --- collectZombieJob: --- 10, [4184407]
[2025-11-26 17:28:12] 2025-11-26 21:40:00,235 | INFO     | zombie collector waiting for pid 4184407
[2025-11-26 17:28:12] 2025-11-26 21:40:00,235 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 17:28:12] 2025-11-26 21:40:00,235 | INFO     | collected zombie processes
[2025-11-26 17:28:12] 2025-11-26 21:40:00,235 | INFO     | will attempt to kill all subprocesses of pid=4184407
[2025-11-26 17:28:12] 2025-11-26 21:40:01,174 | INFO     | PID=4175949 has CPU usage=5.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 17:28:12] 2025-11-26 21:40:01,175 | INFO     | .. there are 41 such processes running
[2025-11-26 17:28:12] 2025-11-26 21:40:01,326 | INFO     | process IDs to be killed: [4184407] (in reverse order)
[2025-11-26 17:28:12] 2025-11-26 21:40:01,691 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 17:28:12] 2025-11-26 21:40:01,691 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 17:28:12] 2025-11-26 21:40:01,715 | INFO     | did not find any defunct processes belonging to 4184407
[2025-11-26 17:28:12] 2025-11-26 21:40:01,733 | INFO     | did not find any defunct processes belonging to 4184407
[2025-11-26 17:28:12] 2025-11-26 21:40:01,735 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 17:28:12] 2025-11-26 21:40:01,735 | INFO     | ready for new job
[2025-11-26 17:28:12] 2025-11-26 21:40:01,735 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 17:28:12] 2025-11-26 21:40:01,738 | INFO     | ***************************************
[2025-11-26 17:28:12] 2025-11-26 21:40:01,738 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 17:28:12] 2025-11-26 21:40:01,738 | INFO     | ***************************************
[2025-11-26 17:28:12] 2025-11-26 21:40:01,738 | INFO     | 
[2025-11-26 17:28:12] 2025-11-26 21:40:01,741 | INFO     | architecture information:
[2025-11-26 17:28:12] 2025-11-26 21:40:01,741 | INFO     | executing command: cat /etc/os-release
[2025-11-26 17:28:12] 2025-11-26 21:40:01,790 | INFO     | cat /etc/os-release:
[2025-11-26 17:28:12] NAME="CentOS Linux"
[2025-11-26 17:28:12] VERSION="7 (Core)"
[2025-11-26 17:28:12] ID="centos"
[2025-11-26 17:28:12] ID_LIKE="rhel fedora"
[2025-11-26 17:28:12] VERSION_ID="7"
[2025-11-26 17:28:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 17:28:12] ANSI_COLOR="0;31"
[2025-11-26 17:28:12] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 17:28:12] HOME_URL="https://www.centos.org/"
[2025-11-26 17:28:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 17:28:12] 
[2025-11-26 17:28:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 17:28:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 17:28:12] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 17:28:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 17:28:12] 
[2025-11-26 17:28:12] 2025-11-26 21:40:01,790 | INFO     | ***************************************
[2025-11-26 17:28:12] 2025-11-26 21:40:02,296 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-26 17:28:12] 2025-11-26 21:40:02,381 | INFO     | sufficient remaining disk space (72147271680 B)
[2025-11-26 17:28:12] 2025-11-26 21:40:02,392 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 17:28:12] 2025-11-26 21:40:02,392 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 17:28:12] 2025-11-26 21:40:02,392 | INFO     | update_server=False
[2025-11-26 17:28:12] 2025-11-26 21:40:02,392 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 17:28:12] 2025-11-26 21:40:02,956 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 17:28:12] 2025-11-26 21:40:02,974 | INFO     | all data control threads have been joined
[2025-11-26 17:28:12] 2025-11-26 21:40:02,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:28:12] 2025-11-26 21:40:02,975 | INFO     | aborting loop
[2025-11-26 17:28:12] 2025-11-26 21:40:03,226 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 17:28:12] 2025-11-26 21:40:03,293 | INFO     | all payload control threads have been joined
[2025-11-26 17:28:12] 2025-11-26 21:40:03,399 | INFO     | [job] retrieve thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:03,449 | INFO     | [data] copytool_in thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:03,839 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 17:28:12] 2025-11-26 21:40:03,858 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:03,860 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:03,980 | INFO     | [job] job monitor thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:04,022 | INFO     | [data] control thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:04,028 | INFO     | all job control threads have been joined
[2025-11-26 17:28:12] 2025-11-26 21:40:04,299 | INFO     | [payload] control thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:04,389 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:04,623 | INFO     | [job] validate thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:04,758 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:04,831 | INFO     | [payload] failed_post thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:04,847 | INFO     | [job] queue monitor thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:04,965 | INFO     | [data] copytool_out thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:05,025 | INFO     | [payload] validate_post thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:05,034 | INFO     | [job] control thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:07,236 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 17:28:12] 2025-11-26 21:40:33,975 | INFO     | PID=4175949 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 17:28:12] 2025-11-26 21:40:33,975 | INFO     | .. there are 41 such processes running
[2025-11-26 17:28:12] 2025-11-26 21:40:33,975 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 17:28:12] 2025-11-26 21:40:33,975 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 17:28:12] 2025-11-26 21:40:33,975 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 17:28:12] 2025-11-26 21:40:57,875 | INFO     | [monitor] cgroup control has ended
[2025-11-26 17:28:12] 2025-11-26 21:40:59,066 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140432734779200)>', '<ExcThread(monitor, started 140432008804096)>']
[2025-11-26 17:28:12] 2025-11-26 21:40:59,151 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 17:28:12] 2025-11-26 21:40:59,152 | INFO     | [monitor] control thread has ended
[2025-11-26 17:28:12] 2025-11-26 21:41:04,092 | INFO     | all workflow threads have been joined
[2025-11-26 17:28:12] 2025-11-26 21:41:04,092 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 17:28:12] 2025-11-26 21:41:04,092 | INFO     | traces error code: 0
[2025-11-26 17:28:12] 2025-11-26 21:41:04,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 17:28:12] 2025-11-26 21:41:04,385 [wrapper] ==== pilot stdout END ====
[2025-11-26 17:28:12] 2025-11-26 21:41:04,395 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 17:28:12] 2025-11-26 21:41:04,424 [wrapper] pilotpid: 4175949
[2025-11-26 17:28:12] 2025-11-26 21:41:04,428 [wrapper] Pilot exit status: 0
[2025-11-26 17:28:12] 2025-11-26 21:41:04,458 [wrapper] pandaids: 6894239155
[2025-11-26 17:28:12] 2025-11-26 21:41:04,582 [wrapper] cleanup supervisor_pilot 1361494 4175950
[2025-11-26 17:28:12] 2025-11-26 21:41:04,601 [wrapper] Test setup, not cleaning
[2025-11-26 17:28:12] 2025-11-26 21:41:04,624 [wrapper] apfmon messages muted
[2025-11-26 17:28:12] 2025-11-26 21:41:04,631 [wrapper] ==== wrapper stdout END ====
[2025-11-26 17:28:12] 2025-11-26 21:41:04,636 [wrapper] ==== wrapper stderr END ====
[2025-11-26 17:28:12]  *** Error codes and diagnostics ***
[2025-11-26 17:28:12]     "exeErrorCode": 0,
[2025-11-26 17:28:12]     "exeErrorDiag": "",
[2025-11-26 17:28:12]     "pilotErrorCode": 0,
[2025-11-26 17:28:12]     "pilotErrorDiag": "",
[2025-11-26 17:28:12]  *** Listing of results directory ***
[2025-11-26 17:28:12] total 627284
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 00:12 pilot3.tar.gz
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:00 queuedata.json
[2025-11-26 17:28:12] -rwx------. 1 boincer umatlas     36292 Nov 25 01:02 runpilot2-wrapper.sh
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas       100 Nov 26 10:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 17:28:12] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 10:21 run_atlas
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas       105 Nov 26 10:21 job.xml
[2025-11-26 17:28:12] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 10:21 EVNT.47523935._000002.pool.root.1
[2025-11-26 17:28:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 10:21 start_atlas.sh
[2025-11-26 17:28:12] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 10:21 shared
[2025-11-26 17:28:12] -rw-r--r--. 2 boincer umatlas    589946 Nov 26 10:21 input.tar.gz
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas         0 Nov 26 10:21 boinc_lockfile
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas      2609 Nov 26 10:22 pandaJob.out
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas        57 Nov 26 10:22 setup.sh.local
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas    991855 Nov 26 10:22 agis_schedconf.cvmfs.json
[2025-11-26 17:28:12] drwx------. 5 boincer umatlas      4096 Nov 26 10:22 pilot3
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas 333928099 Nov 26 16:38 HITS.47523939._000029.pool.root.1
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas       532 Nov 26 16:38 boinc_task_state.xml
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas      1046 Nov 26 16:39 memory_monitor_summary.json
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas        95 Nov 26 16:39 pilot_heartbeat.json
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas   1516240 Nov 26 16:39 agis_ddmendpoints.agis.ALL.json
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas    571410 Nov 26 16:39 log.47523939._000029.job.log.tgz.1
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas      7819 Nov 26 16:39 heartbeat.json
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas      4824 Nov 26 16:41 pilotlog.txt
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas   3041849 Nov 26 16:41 log.47523939._000029.job.log.1
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas       357 Nov 26 16:41 output.list
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas       620 Nov 26 16:41 runtime_log
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas   3635200 Nov 26 16:41 result.tar.gz
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas      9328 Nov 26 16:41 runtime_log.err
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas       657 Nov 26 16:41 61YLDmwI1h8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm3BMKDmPGdA8m.diag
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas      6660 Nov 26 17:28 init_data.xml
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 17:28 boinc_mmap_file
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas        29 Nov 26 17:28 wrapper_checkpoint.txt
[2025-11-26 17:28:12] -rw-r--r--. 1 boincer umatlas     21602 Nov 26 17:28 stderr.txt
[2025-11-26 17:28:12] HITS file was successfully produced:
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas 333928099 Nov 26 16:38 shared/HITS.pool.root.1
[2025-11-26 17:28:12]  *** Contents of shared directory: ***
[2025-11-26 17:28:12] total 620556
[2025-11-26 17:28:12] -rw-r--r--. 2 boincer umatlas 297259225 Nov 26 10:21 ATLAS.root_0
[2025-11-26 17:28:12] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 10:21 start_atlas.sh
[2025-11-26 17:28:12] -rw-r--r--. 2 boincer umatlas    589946 Nov 26 10:21 input.tar.gz
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas 333928099 Nov 26 16:38 HITS.pool.root.1
[2025-11-26 17:28:12] -rw-------. 1 boincer umatlas   3635200 Nov 26 16:41 result.tar.gz
17:28:14 (4165685): run_atlas exited; CPU time 137259.473995
17:28:14 (4165685): called boinc_finish(0)

</stderr_txt>
]]>

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