Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:17 (1041624): wrapper (7.7.26015): starting
00:01:17 (1041624): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:01:17] Arguments: --nthreads 8
[2025-11-26 00:01:17] Threads: 8
[2025-11-26 00:01:17] Checking for CVMFS
[2025-11-26 00:01:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:20] 2.13.3.0 10954 29601 374428 153309 2 221 28981677 32935937 22133 16776704 26 131082310 99.456 194054583 39261 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:20] CVMFS is ok
[2025-11-26 00:01:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:20] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:20] Checking for apptainer binary...
[2025-11-26 00:01:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:20] Running /usr/bin/apptainer --version
[2025-11-26 00:01:20] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:22] c7-11-13.aglt2.org
[2025-11-26 00:01:22] apptainer works
[2025-11-26 00:01:22] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:01:22] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:01:22] Starting ATLAS job with PandaID=6891071020
[2025-11-26 00:01:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:43:36]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:43:36] 2025-11-27 01:42:28,809 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:43:36] 2025-11-27 01:42:28,809 | INFO     | job 6891071020 has state=finished
[2025-11-26 20:43:36] 2025-11-27 01:42:28,809 | INFO     | preparing for final server update for job 6891071020 in state='finished'
[2025-11-26 20:43:36] 2025-11-27 01:42:28,949 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2025-11-26 20:43:36] 2025-11-27 01:42:28,950 | INFO     | this job has now completed (state=finished)
[2025-11-26 20:43:36] 2025-11-27 01:42:28,950 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-26 20:43:36] 2025-11-27 01:42:28,950 | INFO     | log transfer has been attempted: DONE
[2025-11-26 20:43:36] 2025-11-27 01:42:28,950 | INFO     | job 6891071020 has finished - writing final server update
[2025-11-26 20:43:36] 2025-11-27 01:42:28,951 | INFO     | total number of processed events: 1000 (read)
[2025-11-26 20:43:36] 2025-11-27 01:42:28,963 | INFO     | executing command: lscpu
[2025-11-26 20:43:36] 2025-11-27 01:42:29,024 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-26 20:43:36] 2025-11-27 01:42:29,897 | INFO     | monitor loop #4697: job 0:6891071020 is in state 'finished'
[2025-11-26 20:43:36] 2025-11-27 01:42:29,897 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:43:36] 2025-11-27 01:42:30,001 | INFO     | time since job start (74354s) is within the limit (172800.0s)
[2025-11-26 20:43:36] 2025-11-27 01:42:32,007 | INFO     | time since job start (74356s) is within the limit (172800.0s)
[2025-11-26 20:43:36] 2025-11-27 01:42:32,402 | INFO     | monitor loop #4698: job 0:6891071020 is in state 'finished'
[2025-11-26 20:43:36] 2025-11-27 01:42:32,402 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 20:43:36] 2025-11-27 01:42:33,427 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 20:43:36] 2025-11-27 01:42:33,431 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3291.4407968749997
[2025-11-26 20:43:36] 2025-11-27 01:42:33,439 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6891071020/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 20:43:36] 2025-11-27 01:42:33,439 | INFO     | extracted standard info from prmon json
[2025-11-26 20:43:36] 2025-11-27 01:42:33,439 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 20:43:36] 2025-11-27 01:42:33,439 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 20:43:36] 2025-11-27 01:42:33,456 | INFO     | fitting pss+swap vs Time
[2025-11-26 20:43:36] 2025-11-27 01:42:33,458 | INFO     | sum of square deviations: 556109932733.3448
[2025-11-26 20:43:36] 2025-11-27 01:42:33,542 | INFO     | sum of deviations: 5503950436845.849
[2025-11-26 20:43:36] 2025-11-27 01:42:33,542 | INFO     | mean x: 1764170685.8979423
[2025-11-26 20:43:36] 2025-11-27 01:42:33,542 | INFO     | mean y: 2822838.942386831
[2025-11-26 20:43:36] 2025-11-27 01:42:33,556 | INFO     | intersect: -17457588216.1044
[2025-11-26 20:43:36] 2025-11-27 01:42:33,557 | INFO     | chi2: 24.499745237574317
[2025-11-26 20:43:36] 2025-11-27 01:42:33,558 | INFO     | sum of square deviations: 549272563647.76
[2025-11-26 20:43:36] 2025-11-27 01:42:33,680 | INFO     | sum of deviations: 5942365525955.063
[2025-11-26 20:43:36] 2025-11-27 01:42:33,693 | INFO     | mean x: 1764170533.405785
[2025-11-26 20:43:36] 2025-11-27 01:42:33,693 | INFO     | mean y: 2832615.3338842974
[2025-11-26 20:43:36] 2025-11-27 01:42:33,693 | INFO     | intersect: -19083039961.289295
[2025-11-26 20:43:36] 2025-11-27 01:42:33,694 | INFO     | chi2: 20.720873519911464
[2025-11-26 20:43:36] 2025-11-27 01:42:33,695 | INFO     | current chi2=20.720873519911464 (change=15.424126581803563 %)
[2025-11-26 20:43:36] 2025-11-27 01:42:33,695 | INFO     | right removable region: 1209
[2025-11-26 20:43:36] 2025-11-27 01:42:33,696 | INFO     | sum of square deviations: 549271156987.7596
[2025-11-26 20:43:36] 2025-11-27 01:42:33,747 | INFO     | sum of deviations: 4992825064933.731
[2025-11-26 20:43:36] 2025-11-27 01:42:33,747 | INFO     | mean x: 1764170838.405785
[2025-11-26 20:43:36] 2025-11-27 01:42:33,747 | INFO     | mean y: 2834236.725619835
[2025-11-26 20:43:36] 2025-11-27 01:42:33,747 | INFO     | intersect: -16033318888.667505
[2025-11-26 20:43:36] 2025-11-27 01:42:33,748 | INFO     | chi2: 19.579021119492744
[2025-11-26 20:43:36] 2025-11-27 01:42:33,748 | INFO     | current chi2=19.579021119492744 (change=20.084797088154403 %)
[2025-11-26 20:43:36] 2025-11-27 01:42:33,748 | INFO     | left removable region: 10
[2025-11-26 20:43:36] 2025-11-27 01:42:33,749 | INFO     | sum of square deviations: 534425316930.9409
[2025-11-26 20:43:36] 2025-11-27 01:42:33,764 | INFO     | sum of deviations: 5076798830846.246
[2025-11-26 20:43:36] 2025-11-27 01:42:33,764 | INFO     | mean x: 1764170807.9232695
[2025-11-26 20:43:36] 2025-11-27 01:42:33,765 | INFO     | mean y: 2856590.915763136
[2025-11-26 20:43:36] 2025-11-27 01:42:33,765 | INFO     | intersect: -16755968283.833351
[2025-11-26 20:43:36] 2025-11-27 01:42:33,765 | INFO     | chi2: 11.137636493991993
[2025-11-26 20:43:36] 2025-11-27 01:42:33,765 | INFO     | current memory leak: 9.50 B/s (using 1199 data points, chi2=11.14)
[2025-11-26 20:43:36] 2025-11-27 01:42:33,766 | INFO     | could have reported an average CPU frequency of 3284 MHz (44 samples)
[2025-11-26 20:43:36] 2025-11-27 01:42:33,766 | INFO     | ..............................
[2025-11-26 20:43:36] 2025-11-27 01:42:33,766 | INFO     | . Timing measurements:
[2025-11-26 20:43:36] 2025-11-27 01:42:33,767 | INFO     | . get job = 0 s
[2025-11-26 20:43:36] 2025-11-27 01:42:33,767 | INFO     | . initial setup = 9 s
[2025-11-26 20:43:36] 2025-11-27 01:42:33,767 | INFO     | . payload setup = 94 s
[2025-11-26 20:43:36] 2025-11-27 01:42:33,767 | INFO     | . stage-in = 0 s
[2025-11-26 20:43:36] 2025-11-27 01:42:33,767 | INFO     | . payload execution = 74140 s
[2025-11-26 20:43:36] 2025-11-27 01:42:33,767 | INFO     | . stage-out = 4 s
[2025-11-26 20:43:36] 2025-11-27 01:42:33,767 | INFO     | . log creation = 0 s
[2025-11-26 20:43:36] 2025-11-27 01:42:33,767 | INFO     | ..............................
[2025-11-26 20:43:36] 2025-11-27 01:42:33,852 | INFO     | 
[2025-11-26 20:43:36] 2025-11-27 01:42:33,853 | INFO     | job summary report
[2025-11-26 20:43:36] 2025-11-27 01:42:33,853 | INFO     | --------------------------------------------------
[2025-11-26 20:43:36] 2025-11-27 01:42:33,853 | INFO     | PanDA job id: 6891071020
[2025-11-26 20:43:36] 2025-11-27 01:42:33,853 | INFO     | task id: 47483661
[2025-11-26 20:43:36] 2025-11-27 01:42:33,853 | INFO     | errors: (none)
[2025-11-26 20:43:36] 2025-11-27 01:42:33,853 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:43:36] 2025-11-27 01:42:33,853 | INFO     | pilot state: finished 
[2025-11-26 20:43:36] 2025-11-27 01:42:33,853 | INFO     | transexitcode: 0
[2025-11-26 20:43:36] 2025-11-27 01:42:33,853 | INFO     | exeerrorcode: 0
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | exeerrordiag: 
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | exitcode: 0
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | exitmsg: OK
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | cpuconsumptiontime: 197472 s
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | nevents: 1000
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | neventsw: 0
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | pid: 1124857
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | pgrp: 1124857
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | corecount: 8
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | event service: False
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | sizes: {0: 2283476, 1: 2284332, 12: 2284332, 23: 2284360, 34: 2284388, 45: 2284416, 54: 2284834, 55: 2284862, 74239: 2344418, 74244: 2353412, 74245: 2353468, 74251
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | --------------------------------------------------
[2025-11-26 20:43:36] 2025-11-27 01:42:33,854 | INFO     | 
[2025-11-26 20:43:36] 2025-11-27 01:42:33,855 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 20:43:36] 2025-11-27 01:42:33,878 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,878 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,878 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,878 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,879 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,880 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,880 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:43:36] 2025-11-27 01:42:33,880 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,880 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:43:36] 2025-11-27 01:42:33,880 | INFO     | job 6891071020 has completed (purged errors)
[2025-11-26 20:43:36] 2025-11-27 01:42:33,880 | INFO     | overall cleanup function is called
[2025-11-26 20:43:36] 2025-11-27 01:42:34,899 | INFO     | --- collectZombieJob: --- 10, [1124857]
[2025-11-26 20:43:36] 2025-11-27 01:42:34,899 | INFO     | zombie collector waiting for pid 1124857
[2025-11-26 20:43:36] 2025-11-27 01:42:34,899 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:43:36] 2025-11-27 01:42:34,899 | INFO     | collected zombie processes
[2025-11-26 20:43:36] 2025-11-27 01:42:34,899 | INFO     | will attempt to kill all subprocesses of pid=1124857
[2025-11-26 20:43:36] 2025-11-27 01:42:35,429 | INFO     | process IDs to be killed: [1124857] (in reverse order)
[2025-11-26 20:43:36] 2025-11-27 01:42:35,559 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:43:36] 2025-11-27 01:42:35,560 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:43:36] 2025-11-27 01:42:35,576 | INFO     | did not find any defunct processes belonging to 1124857
[2025-11-26 20:43:36] 2025-11-27 01:42:35,595 | INFO     | did not find any defunct processes belonging to 1124857
[2025-11-26 20:43:36] 2025-11-27 01:42:35,597 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:43:36] 2025-11-27 01:42:35,597 | INFO     | ready for new job
[2025-11-26 20:43:36] 2025-11-27 01:42:35,597 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:43:36] 2025-11-27 01:42:35,609 | INFO     | ***************************************
[2025-11-26 20:43:36] 2025-11-27 01:42:35,609 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:43:36] 2025-11-27 01:42:35,609 | INFO     | ***************************************
[2025-11-26 20:43:36] 2025-11-27 01:42:35,609 | INFO     | 
[2025-11-26 20:43:36] 2025-11-27 01:42:35,617 | INFO     | architecture information:
[2025-11-26 20:43:36] 2025-11-27 01:42:35,625 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:43:36] 2025-11-27 01:42:35,644 | INFO     | cat /etc/os-release:
[2025-11-26 20:43:36] NAME="CentOS Linux"
[2025-11-26 20:43:36] VERSION="7 (Core)"
[2025-11-26 20:43:36] ID="centos"
[2025-11-26 20:43:36] ID_LIKE="rhel fedora"
[2025-11-26 20:43:36] VERSION_ID="7"
[2025-11-26 20:43:36] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:43:36] ANSI_COLOR="0;31"
[2025-11-26 20:43:36] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:43:36] HOME_URL="https://www.centos.org/"
[2025-11-26 20:43:36] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:43:36] 
[2025-11-26 20:43:36] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:43:36] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:43:36] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:43:36] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:43:36] 
[2025-11-26 20:43:36] 2025-11-27 01:42:35,644 | INFO     | ***************************************
[2025-11-26 20:43:36] 2025-11-27 01:42:36,148 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 20:43:36] 2025-11-27 01:42:36,174 | INFO     | sufficient remaining disk space (90076872704 B)
[2025-11-26 20:43:36] 2025-11-27 01:42:36,174 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:43:36] 2025-11-27 01:42:36,174 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:43:36] 2025-11-27 01:42:36,174 | INFO     | update_server=False
[2025-11-26 20:43:36] 2025-11-27 01:42:36,174 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:43:36] 2025-11-27 01:42:36,175 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:43:36] 2025-11-27 01:42:36,175 | INFO     | aborting loop
[2025-11-26 20:43:36] 2025-11-27 01:42:36,180 | INFO     | all job control threads have been joined
[2025-11-26 20:43:36] 2025-11-27 01:42:36,359 | INFO     | all data control threads have been joined
[2025-11-26 20:43:36] 2025-11-27 01:42:36,671 | INFO     | all payload control threads have been joined
[2025-11-26 20:43:36] 2025-11-27 01:42:37,179 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:37,182 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:37,192 | INFO     | [job] control thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:37,203 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:43:36] 2025-11-27 01:42:37,235 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:37,369 | INFO     | [data] control thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:37,438 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:37,654 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:37,676 | INFO     | [payload] control thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:37,925 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:38,098 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:38,107 | INFO     | [job] validate thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:38,124 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:38,488 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:38,885 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:43:36] 2025-11-27 01:42:38,958 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:43:36] 2025-11-27 01:42:39,216 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:39,891 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:42:42,968 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:43:36] 2025-11-27 01:43:05,695 | INFO     | PID=1065986 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:43:36] 2025-11-27 01:43:05,696 | INFO     | .. there are 33 such processes running
[2025-11-26 20:43:36] 2025-11-27 01:43:05,696 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:43:36] 2025-11-27 01:43:05,697 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:43:36] 2025-11-27 01:43:05,697 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:43:36] 2025-11-27 01:43:29,354 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:43:36] 2025-11-27 01:43:31,452 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140226581280576)>', '<ExcThread(monitor, started 140226068453120)>']
[2025-11-26 20:43:36] 2025-11-27 01:43:31,873 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:43:36] 2025-11-27 01:43:31,873 | INFO     | [monitor] control thread has ended
[2025-11-26 20:43:36] 2025-11-27 01:43:36,483 | INFO     | all workflow threads have been joined
[2025-11-26 20:43:36] 2025-11-27 01:43:36,483 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:43:36] 2025-11-27 01:43:36,483 | INFO     | traces error code: 0
[2025-11-26 20:43:36] 2025-11-27 01:43:36,483 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:43:36] 2025-11-27 01:43:36,699 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:43:36] 2025-11-27 01:43:36,703 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:43:36] 2025-11-27 01:43:36,706 [wrapper] pilotpid: 1065986
[2025-11-26 20:43:36] 2025-11-27 01:43:36,709 [wrapper] Pilot exit status: 0
[2025-11-26 20:43:36] 2025-11-27 01:43:36,718 [wrapper] pandaids: 6891071020
[2025-11-26 20:43:36] 2025-11-27 01:43:36,811 [wrapper] cleanup supervisor_pilot 1318091 1065987
[2025-11-26 20:43:36] 2025-11-27 01:43:36,818 [wrapper] Test setup, not cleaning
[2025-11-26 20:43:36] 2025-11-27 01:43:36,821 [wrapper] apfmon messages muted
[2025-11-26 20:43:36] 2025-11-27 01:43:36,825 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:43:36] 2025-11-27 01:43:36,830 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:43:36]  *** Error codes and diagnostics ***
[2025-11-26 20:43:36]     "exeErrorCode": 0,
[2025-11-26 20:43:36]     "exeErrorDiag": "",
[2025-11-26 20:43:36]     "pilotErrorCode": 0,
[2025-11-26 20:43:36]     "pilotErrorDiag": "",
[2025-11-26 20:43:36]  *** Listing of results directory ***
[2025-11-26 20:43:36] total 1314568
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 00:55 pilot3.tar.gz
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 00:58 queuedata.json
[2025-11-26 20:43:36] -rwx------. 1 boincer umatlas     36292 Nov 18 00:59 runpilot2-wrapper.sh
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:43:36] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-26 20:43:36] -rw-r--r--. 2 boincer umatlas 407270552 Nov 26 00:01 EVNT.47483658._000157.pool.root.1
[2025-11-26 20:43:36] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:01 start_atlas.sh
[2025-11-26 20:43:36] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-26 20:43:36] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 00:01 input.tar.gz
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:01 pandaJob.out
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-26 20:43:36] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:27 boinc_task_state.xml
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas      6905 Nov 26 20:39 init_data.xml
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas 910843748 Nov 26 20:40 HITS.47483661._001564.pool.root.1
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas      1049 Nov 26 20:42 memory_monitor_summary.json
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:42 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas   2329407 Nov 26 20:42 log.47483661._001564.job.log.tgz.1
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas      8593 Nov 26 20:42 heartbeat.json
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas        95 Nov 26 20:43 pilot_heartbeat.json
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:43 boinc_mmap_file
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:43 wrapper_checkpoint.txt
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas      4824 Nov 26 20:43 pilotlog.txt
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas   9714753 Nov 26 20:43 log.47483661._001564.job.log.1
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas       353 Nov 26 20:43 output.list
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:43 runtime_log
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas  12062720 Nov 26 20:43 result.tar.gz
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas      8704 Nov 26 20:43 runtime_log.err
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas       661 Nov 26 20:43 mHGODmEvTf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmqIKODmaWiBtm.diag
[2025-11-26 20:43:36] -rw-r--r--. 1 boincer umatlas     21873 Nov 26 20:43 stderr.txt
[2025-11-26 20:43:36] HITS file was successfully produced:
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas 910843748 Nov 26 20:40 shared/HITS.pool.root.1
[2025-11-26 20:43:36]  *** Contents of shared directory: ***
[2025-11-26 20:43:36] total 1299608
[2025-11-26 20:43:36] -rw-r--r--. 2 boincer umatlas 407270552 Nov 26 00:01 ATLAS.root_0
[2025-11-26 20:43:36] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:01 start_atlas.sh
[2025-11-26 20:43:36] -rw-r--r--. 2 boincer umatlas    590097 Nov 26 00:01 input.tar.gz
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas 910843748 Nov 26 20:40 HITS.pool.root.1
[2025-11-26 20:43:36] -rw-------. 1 boincer umatlas  12062720 Nov 26 20:43 result.tar.gz
20:43:38 (1041624): run_atlas exited; CPU time 197672.380163
20:43:38 (1041624): called boinc_finish(0)

</stderr_txt>
]]>

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