Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:00 (870667): wrapper (7.7.26015): starting
00:01:00 (870667): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:00] Arguments: --nthreads 9
[2025-11-26 00:01:00] Threads: 9
[2025-11-26 00:01:00] Checking for CVMFS
[2025-11-26 00:01:01] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:03] 2.13.3.0 5308 7988 220744 153309 2 117 28735073 32935936 23017 16776704 0 21853348 99.389 41666936 42020 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:03] CVMFS is ok
[2025-11-26 00:01:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:03] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:03] Checking for apptainer binary...
[2025-11-26 00:01:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:03] Running /usr/bin/apptainer --version
[2025-11-26 00:01:03] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:03] c6-1-24-1.aglt2.org
[2025-11-26 00:01:03] apptainer works
[2025-11-26 00:01:04] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:04] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:04] Starting ATLAS job with PandaID=6895884243
[2025-11-26 00:01:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 07:53:54]  *** The last 200 lines of the pilot log: ***
[2025-11-27 07:53:54] 2025-11-27 12:53:03,702 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:53:54] 2025-11-27 12:53:04,316 | INFO     | PID=875372 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 07:53:54] 2025-11-27 12:53:04,316 | INFO     | .. there are 33 such processes running
[2025-11-27 07:53:54] 2025-11-27 12:53:05,317 | INFO     | time since job start (114647s) is within the limit (172800.0s)
[2025-11-27 07:53:54] 2025-11-27 12:53:06,207 | INFO     | monitor loop #7307: job 0:6895884243 is in state 'finished'
[2025-11-27 07:53:54] 2025-11-27 12:53:06,207 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:53:54] 2025-11-27 12:53:07,324 | INFO     | time since job start (114649s) is within the limit (172800.0s)
[2025-11-27 07:53:54] 2025-11-27 12:53:08,715 | INFO     | monitor loop #7308: job 0:6895884243 is in state 'finished'
[2025-11-27 07:53:54] 2025-11-27 12:53:08,715 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:53:54] 2025-11-27 12:53:09,331 | INFO     | time since job start (114651s) is within the limit (172800.0s)
[2025-11-27 07:53:54] 2025-11-27 12:53:11,224 | INFO     | monitor loop #7309: job 0:6895884243 is in state 'finished'
[2025-11-27 07:53:54] 2025-11-27 12:53:11,224 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:53:54] 2025-11-27 12:53:11,337 | INFO     | time since job start (114653s) is within the limit (172800.0s)
[2025-11-27 07:53:54] 2025-11-27 12:53:12,968 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 07:53:54] 2025-11-27 12:53:13,037 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2878.8162499999994
[2025-11-27 07:53:54] 2025-11-27 12:53:13,099 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6895884243/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 07:53:54] 2025-11-27 12:53:13,100 | INFO     | extracted standard info from prmon json
[2025-11-27 07:53:54] 2025-11-27 12:53:13,100 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 07:53:54] 2025-11-27 12:53:13,100 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 07:53:54] 2025-11-27 12:53:13,196 | INFO     | fitting pss+swap vs Time
[2025-11-27 07:53:54] 2025-11-27 12:53:13,217 | INFO     | sum of square deviations: 2050597447373.2024
[2025-11-27 07:53:54] 2025-11-27 12:53:13,441 | INFO     | time since job start (114655s) is within the limit (172800.0s)
[2025-11-27 07:53:54] 2025-11-27 12:53:13,804 | INFO     | sum of deviations: 7774224015156.684
[2025-11-27 07:53:54] 2025-11-27 12:53:13,804 | INFO     | mean x: 1764190722.4949389
[2025-11-27 07:53:54] 2025-11-27 12:53:13,804 | INFO     | mean y: 3050917.652637187
[2025-11-27 07:53:54] 2025-11-27 12:53:13,805 | INFO     | intersect: -6685348065.63189
[2025-11-27 07:53:54] 2025-11-27 12:53:13,811 | INFO     | chi2: 28.865370655617948
[2025-11-27 07:53:54] 2025-11-27 12:53:13,813 | INFO     | sum of square deviations: 2034254849950.9949
[2025-11-27 07:53:54] 2025-11-27 12:53:13,848 | INFO     | monitor loop #7310: job 0:6895884243 is in state 'finished'
[2025-11-27 07:53:54] 2025-11-27 12:53:13,848 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 07:53:54] 2025-11-27 12:53:14,086 | INFO     | sum of deviations: 8453036020478.031
[2025-11-27 07:53:54] 2025-11-27 12:53:14,087 | INFO     | mean x: 1764190569.9983974
[2025-11-27 07:53:54] 2025-11-27 12:53:14,087 | INFO     | mean y: 3057250.6826923075
[2025-11-27 07:53:54] 2025-11-27 12:53:14,087 | INFO     | intersect: -7327767810.66268
[2025-11-27 07:53:54] 2025-11-27 12:53:14,089 | INFO     | chi2: 25.447428027128794
[2025-11-27 07:53:54] 2025-11-27 12:53:14,089 | INFO     | current chi2=25.447428027128794 (change=11.84097952272071 %)
[2025-11-27 07:53:54] 2025-11-27 12:53:14,089 | INFO     | right removable region: 1871
[2025-11-27 07:53:54] 2025-11-27 12:53:14,095 | INFO     | sum of square deviations: 2034253252541.9998
[2025-11-27 07:53:54] 2025-11-27 12:53:14,288 | INFO     | sum of deviations: 6952103178787.173
[2025-11-27 07:53:54] 2025-11-27 12:53:14,288 | INFO     | mean x: 1764190874.9989316
[2025-11-27 07:53:54] 2025-11-27 12:53:14,288 | INFO     | mean y: 3058588.090811966
[2025-11-27 07:53:54] 2025-11-27 12:53:14,288 | INFO     | intersect: -6026100748.260881
[2025-11-27 07:53:54] 2025-11-27 12:53:14,298 | INFO     | chi2: 24.488330341453146
[2025-11-27 07:53:54] 2025-11-27 12:53:14,299 | INFO     | current chi2=24.488330341453146 (change=15.163638002039361 %)
[2025-11-27 07:53:54] 2025-11-27 12:53:14,299 | INFO     | left removable region: 10
[2025-11-27 07:53:54] 2025-11-27 12:53:14,301 | INFO     | sum of square deviations: 1998604128083.1497
[2025-11-27 07:53:54] 2025-11-27 12:53:15,031 | INFO     | sum of deviations: 7018657183999.667
[2025-11-27 07:53:54] 2025-11-27 12:53:15,031 | INFO     | mean x: 1764190844.5072541
[2025-11-27 07:53:54] 2025-11-27 12:53:15,032 | INFO     | mean y: 3073071.7641053195
[2025-11-27 07:53:54] 2025-11-27 12:53:15,032 | INFO     | intersect: -6192376327.523902
[2025-11-27 07:53:54] 2025-11-27 12:53:15,038 | INFO     | chi2: 17.049672873569374
[2025-11-27 07:53:54] 2025-11-27 12:53:15,039 | INFO     | current memory leak: 3.51 B/s (using 1861 data points, chi2=17.05)
[2025-11-27 07:53:54] 2025-11-27 12:53:15,045 | INFO     | could have reported an average CPU frequency of 2902 MHz (66 samples)
[2025-11-27 07:53:54] 2025-11-27 12:53:15,045 | INFO     | ..............................
[2025-11-27 07:53:54] 2025-11-27 12:53:15,045 | INFO     | . Timing measurements:
[2025-11-27 07:53:54] 2025-11-27 12:53:15,045 | INFO     | . get job = 0 s
[2025-11-27 07:53:54] 2025-11-27 12:53:15,046 | INFO     | . initial setup = 5 s
[2025-11-27 07:53:54] 2025-11-27 12:53:15,046 | INFO     | . payload setup = 48 s
[2025-11-27 07:53:54] 2025-11-27 12:53:15,046 | INFO     | . stage-in = 0 s
[2025-11-27 07:53:54] 2025-11-27 12:53:15,046 | INFO     | . payload execution = 114474 s
[2025-11-27 07:53:54] 2025-11-27 12:53:15,046 | INFO     | . stage-out = 11 s
[2025-11-27 07:53:54] 2025-11-27 12:53:15,046 | INFO     | . log creation = 2 s
[2025-11-27 07:53:54] 2025-11-27 12:53:15,046 | INFO     | ..............................
[2025-11-27 07:53:54] 2025-11-27 12:53:15,765 | INFO     | time since job start (114657s) is within the limit (172800.0s)
[2025-11-27 07:53:54] 2025-11-27 12:53:16,272 | INFO     | 
[2025-11-27 07:53:54] 2025-11-27 12:53:16,273 | INFO     | job summary report
[2025-11-27 07:53:54] 2025-11-27 12:53:16,278 | INFO     | --------------------------------------------------
[2025-11-27 07:53:54] 2025-11-27 12:53:16,278 | INFO     | PanDA job id: 6895884243
[2025-11-27 07:53:54] 2025-11-27 12:53:16,278 | INFO     | task id: 47556161
[2025-11-27 07:53:54] 2025-11-27 12:53:16,278 | INFO     | errors: (none)
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | pilot state: finished 
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | transexitcode: 0
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | exeerrorcode: 0
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | exeerrordiag: 
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | exitcode: 0
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | exitmsg: OK
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | cpuconsumptiontime: 268486 s
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | nevents: 1000
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | neventsw: 0
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | pid: 885224
[2025-11-27 07:53:54] 2025-11-27 12:53:16,279 | INFO     | pgrp: 885224
[2025-11-27 07:53:54] 2025-11-27 12:53:16,280 | INFO     | corecount: 9
[2025-11-27 07:53:54] 2025-11-27 12:53:16,280 | INFO     | event service: False
[2025-11-27 07:53:54] 2025-11-27 12:53:16,280 | INFO     | sizes: {0: 2284141, 1: 2284340, 12: 2284340, 24: 2284368, 34: 2284396, 38: 2284686, 45: 2284842, 114528: 2364123, 114529: 2364122, 114542: 2373172, 114543: 2373228
[2025-11-27 07:53:54] 2025-11-27 12:53:16,280 | INFO     | --------------------------------------------------
[2025-11-27 07:53:54] 2025-11-27 12:53:16,280 | INFO     | 
[2025-11-27 07:53:54] 2025-11-27 12:53:16,280 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 07:53:54] 2025-11-27 12:53:16,491 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,492 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,492 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,492 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,492 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,492 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,492 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,492 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,492 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,492 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,492 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,492 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,493 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,493 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,493 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,493 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,493 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,493 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 07:53:54] 2025-11-27 12:53:16,493 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,493 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 07:53:54] 2025-11-27 12:53:16,493 | INFO     | job 6895884243 has completed (purged errors)
[2025-11-27 07:53:54] 2025-11-27 12:53:16,494 | INFO     | overall cleanup function is called
[2025-11-27 07:53:54] 2025-11-27 12:53:17,568 | INFO     | --- collectZombieJob: --- 10, [885224]
[2025-11-27 07:53:54] 2025-11-27 12:53:17,569 | INFO     | zombie collector waiting for pid 885224
[2025-11-27 07:53:54] 2025-11-27 12:53:17,569 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 07:53:54] 2025-11-27 12:53:17,569 | INFO     | collected zombie processes
[2025-11-27 07:53:54] 2025-11-27 12:53:17,569 | INFO     | will attempt to kill all subprocesses of pid=885224
[2025-11-27 07:53:54] 2025-11-27 12:53:19,467 | INFO     | process IDs to be killed: [885224] (in reverse order)
[2025-11-27 07:53:54] 2025-11-27 12:53:19,850 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 07:53:54] 2025-11-27 12:53:19,850 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 07:53:54] 2025-11-27 12:53:20,284 | INFO     | did not find any defunct processes belonging to 885224
[2025-11-27 07:53:54] 2025-11-27 12:53:20,613 | INFO     | did not find any defunct processes belonging to 885224
[2025-11-27 07:53:54] 2025-11-27 12:53:20,787 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 07:53:54] 2025-11-27 12:53:20,787 | INFO     | ready for new job
[2025-11-27 07:53:54] 2025-11-27 12:53:20,788 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 07:53:54] 2025-11-27 12:53:20,818 | INFO     | ***************************************
[2025-11-27 07:53:54] 2025-11-27 12:53:20,818 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 07:53:54] 2025-11-27 12:53:20,818 | INFO     | ***************************************
[2025-11-27 07:53:54] 2025-11-27 12:53:20,818 | INFO     | 
[2025-11-27 07:53:54] 2025-11-27 12:53:20,822 | INFO     | architecture information:
[2025-11-27 07:53:54] 2025-11-27 12:53:20,831 | INFO     | executing command: cat /etc/os-release
[2025-11-27 07:53:54] 2025-11-27 12:53:20,932 | INFO     | cat /etc/os-release:
[2025-11-27 07:53:54] NAME="CentOS Linux"
[2025-11-27 07:53:54] VERSION="7 (Core)"
[2025-11-27 07:53:54] ID="centos"
[2025-11-27 07:53:54] ID_LIKE="rhel fedora"
[2025-11-27 07:53:54] VERSION_ID="7"
[2025-11-27 07:53:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 07:53:54] ANSI_COLOR="0;31"
[2025-11-27 07:53:54] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 07:53:54] HOME_URL="https://www.centos.org/"
[2025-11-27 07:53:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 07:53:54] 
[2025-11-27 07:53:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 07:53:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 07:53:54] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 07:53:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 07:53:54] 
[2025-11-27 07:53:54] 2025-11-27 12:53:20,933 | INFO     | ***************************************
[2025-11-27 07:53:54] 2025-11-27 12:53:21,435 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 07:53:54] 2025-11-27 12:53:21,505 | INFO     | sufficient remaining disk space (69400002560 B)
[2025-11-27 07:53:54] 2025-11-27 12:53:21,506 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 07:53:54] 2025-11-27 12:53:21,506 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 07:53:54] 2025-11-27 12:53:21,506 | INFO     | update_server=False
[2025-11-27 07:53:54] 2025-11-27 12:53:21,506 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 07:53:54] 2025-11-27 12:53:21,507 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 07:53:54] 2025-11-27 12:53:21,508 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:53:54] 2025-11-27 12:53:21,512 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 07:53:54] 2025-11-27 12:53:21,537 | INFO     | all job control threads have been joined
[2025-11-27 07:53:54] 2025-11-27 12:53:21,927 | INFO     | all data control threads have been joined
[2025-11-27 07:53:54] 2025-11-27 12:53:22,130 | INFO     | all payload control threads have been joined
[2025-11-27 07:53:54] 2025-11-27 12:53:22,457 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 07:53:54] 2025-11-27 12:53:22,457 | INFO     | aborting loop
[2025-11-27 07:53:54] 2025-11-27 12:53:22,512 | INFO     | [job] retrieve thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:22,517 | INFO     | [job] queue monitor thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:22,565 | INFO     | [job] control thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:22,817 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:22,821 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:22,841 | INFO     | [data] copytool_in thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:22,934 | INFO     | [data] control thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:22,944 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:23,159 | INFO     | [payload] control thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:23,463 | INFO     | [job] job monitor thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:23,516 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:23,520 | INFO     | [data] copytool_out thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:23,700 | INFO     | [payload] validate_post thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:23,746 | INFO     | [payload] failed_post thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:23,790 | INFO     | [job] validate thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:25,516 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 07:53:54] 2025-11-27 12:53:41,898 | INFO     | [monitor] cgroup control has ended
[2025-11-27 07:53:54] 2025-11-27 12:53:42,257 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140419140392768)>', '<ExcThread(monitor, started 140418868025088)>']
[2025-11-27 07:53:54] 2025-11-27 12:53:47,291 | INFO     | all workflow threads have been joined
[2025-11-27 07:53:54] 2025-11-27 12:53:47,293 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 07:53:54] 2025-11-27 12:53:47,293 | INFO     | traces error code: 0
[2025-11-27 07:53:54] 2025-11-27 12:53:47,293 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 07:53:54] 2025-11-27 12:53:50,956 | INFO     | PID=875372 has CPU usage=3.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-27 07:53:54] 2025-11-27 12:53:50,957 | INFO     | .. there are 33 such processes running
[2025-11-27 07:53:54] 2025-11-27 12:53:50,957 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 07:53:54] 2025-11-27 12:53:50,957 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 07:53:54] 2025-11-27 12:53:50,957 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 07:53:54] 2025-11-27 12:53:50,957 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 07:53:54] 2025-11-27 12:53:50,957 | INFO     | [monitor] control thread has ended
[2025-11-27 07:53:54] 2025-11-27 12:53:52,678 [wrapper] ==== pilot stdout END ====
[2025-11-27 07:53:54] 2025-11-27 12:53:52,706 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 07:53:54] 2025-11-27 12:53:52,733 [wrapper] pilotpid: 875372
[2025-11-27 07:53:54] 2025-11-27 12:53:52,761 [wrapper] Pilot exit status: 0
[2025-11-27 07:53:54] 2025-11-27 12:53:52,828 [wrapper] pandaids: 6895884243
[2025-11-27 07:53:54] 2025-11-27 12:53:53,132 [wrapper] cleanup supervisor_pilot 2991328 875373
[2025-11-27 07:53:54] 2025-11-27 12:53:53,164 [wrapper] Test setup, not cleaning
[2025-11-27 07:53:54] 2025-11-27 12:53:53,178 [wrapper] apfmon messages muted
[2025-11-27 07:53:54] 2025-11-27 12:53:53,193 [wrapper] ==== wrapper stdout END ====
[2025-11-27 07:53:54] 2025-11-27 12:53:53,207 [wrapper] ==== wrapper stderr END ====
[2025-11-27 07:53:54]  *** Error codes and diagnostics ***
[2025-11-27 07:53:54]     "exeErrorCode": 0,
[2025-11-27 07:53:54]     "exeErrorDiag": "",
[2025-11-27 07:53:54]     "pilotErrorCode": 0,
[2025-11-27 07:53:54]     "pilotErrorDiag": "",
[2025-11-27 07:53:54]  *** Listing of results directory ***
[2025-11-27 07:53:54] total 1346428
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 12:01 pilot3.tar.gz
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 12:16 queuedata.json
[2025-11-27 07:53:54] -rwx------. 1 boincer umatlas     36292 Nov 24 12:17 runpilot2-wrapper.sh
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 07:53:54] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:00 run_atlas
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:00 job.xml
[2025-11-27 07:53:54] -rw-r--r--. 2 boincer umatlas 409217801 Nov 26 00:01 EVNT.47483658._002057.pool.root.1
[2025-11-27 07:53:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 07:53:54] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-27 07:53:54] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 00:01 input.tar.gz
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:01 pandaJob.out
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-27 07:53:54] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas       533 Nov 27 07:19 boinc_task_state.xml
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 07:46 init_data.xml
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas 929775767 Nov 27 07:51 HITS.47556161._000410.pool.root.1
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas      1070 Nov 27 07:52 memory_monitor_summary.json
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas   1516240 Nov 27 07:52 agis_ddmendpoints.agis.ALL.json
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas   2942470 Nov 27 07:52 log.47556161._000410.job.log.tgz.1
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas        95 Nov 27 07:52 pilot_heartbeat.json
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas      8644 Nov 27 07:53 heartbeat.json
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 07:53 boinc_mmap_file
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas        29 Nov 27 07:53 wrapper_checkpoint.txt
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas       822 Nov 27 07:53 pilotlog.txt
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas  14972193 Nov 27 07:53 log.47556161._000410.job.log.1
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas       353 Nov 27 07:53 output.list
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas       620 Nov 27 07:53 runtime_log
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas  17930240 Nov 27 07:53 result.tar.gz
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas       668 Nov 27 07:53 UkrLDm6Mph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmCoLKDmov38ln.diag
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas      9349 Nov 27 07:53 runtime_log.err
[2025-11-27 07:53:54] -rw-r--r--. 1 boincer umatlas     21895 Nov 27 07:53 stderr.txt
[2025-11-27 07:53:54] HITS file was successfully produced:
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas 929775767 Nov 27 07:51 shared/HITS.pool.root.1
[2025-11-27 07:53:54]  *** Contents of shared directory: ***
[2025-11-27 07:53:54] total 1325732
[2025-11-27 07:53:54] -rw-r--r--. 2 boincer umatlas 409217801 Nov 26 00:01 ATLAS.root_0
[2025-11-27 07:53:54] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 07:53:54] -rw-r--r--. 2 boincer umatlas    590098 Nov 26 00:01 input.tar.gz
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas 929775767 Nov 27 07:51 HITS.pool.root.1
[2025-11-27 07:53:54] -rw-------. 1 boincer umatlas  17930240 Nov 27 07:53 result.tar.gz
07:53:56 (870667): run_atlas exited; CPU time 271328.084668
07:53:56 (870667): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN