Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:39 (1046535): wrapper (7.7.26015): starting
00:01:39 (1046535): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:01:39] Arguments: --nthreads 8
[2025-11-26 00:01:39] Threads: 8
[2025-11-26 00:01:39] Checking for CVMFS
[2025-11-26 00:01:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:41] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:41] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:43] 2.13.3.0 10954 29601 374428 153309 2 221 28981677 32935937 22140 16776704 26 131085824 99.456 194054583 39261 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:43] CVMFS is ok
[2025-11-26 00:01:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:43] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:43] Checking for apptainer binary...
[2025-11-26 00:01:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:43] Running /usr/bin/apptainer --version
[2025-11-26 00:01:44] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:45] c7-11-13.aglt2.org
[2025-11-26 00:01:45] apptainer works
[2025-11-26 00:01:45] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:01:45] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:01:45] Starting ATLAS job with PandaID=6896713844
[2025-11-26 00:01:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 20:16:09]  *** The last 200 lines of the pilot log: ***
[2025-11-26 20:16:09] 2025-11-27 01:15:37,183 | INFO     | current chi2=17.26512993334253 (change=12.264929477638649 %)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,183 | INFO     | right removable region: 1182
[2025-11-26 20:16:09] 2025-11-27 01:15:37,185 | INFO     | sum of square deviations: 513303302996.05566
[2025-11-26 20:16:09] 2025-11-27 01:15:37,214 | INFO     | sum of deviations: 5082440867404.247
[2025-11-26 20:16:09] 2025-11-27 01:15:37,214 | INFO     | mean x: 1764170048.2679627
[2025-11-26 20:16:09] 2025-11-27 01:15:37,214 | INFO     | mean y: 2847407.576500423
[2025-11-26 20:16:09] 2025-11-27 01:15:37,214 | INFO     | intersect: -17464973076.01099
[2025-11-26 20:16:09] 2025-11-27 01:15:37,215 | INFO     | chi2: 14.736567405178858
[2025-11-26 20:16:09] 2025-11-27 01:15:37,215 | INFO     | current chi2=14.736567405178858 (change=25.114158680380655 %)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,216 | INFO     | sum of square deviations: 506820586377.7286
[2025-11-26 20:16:09] 2025-11-27 01:15:37,246 | INFO     | sum of deviations: 4642111469664.416
[2025-11-26 20:16:09] 2025-11-27 01:15:37,246 | INFO     | mean x: 1764170200.777589
[2025-11-26 20:16:09] 2025-11-27 01:15:37,246 | INFO     | mean y: 2857765.4252971136
[2025-11-26 20:16:09] 2025-11-27 01:15:37,246 | INFO     | intersect: -16155670407.237139
[2025-11-26 20:16:09] 2025-11-27 01:15:37,247 | INFO     | chi2: 11.034157763451937
[2025-11-26 20:16:09] 2025-11-27 01:15:37,247 | INFO     | current chi2=11.034157763451937 (change=25.12396231720684 %)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,248 | INFO     | sum of square deviations: 500392661484.1801
[2025-11-26 20:16:09] 2025-11-27 01:15:37,276 | INFO     | sum of deviations: 4215634718841.4844
[2025-11-26 20:16:09] 2025-11-27 01:15:37,276 | INFO     | mean x: 1764170353.2872975
[2025-11-26 20:16:09] 2025-11-27 01:15:37,277 | INFO     | mean y: 2867885.9718670077
[2025-11-26 20:16:09] 2025-11-27 01:15:37,277 | INFO     | intersect: -14859655815.335257
[2025-11-26 20:16:09] 2025-11-27 01:15:37,278 | INFO     | chi2: 7.602536989892609
[2025-11-26 20:16:09] 2025-11-27 01:15:37,278 | INFO     | current chi2=7.602536989892609 (change=31.099979238340847 %)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,279 | INFO     | sum of square deviations: 494019295752.90985
[2025-11-26 20:16:09] 2025-11-27 01:15:37,305 | INFO     | sum of deviations: 3805625265309.724
[2025-11-26 20:16:09] 2025-11-27 01:15:37,306 | INFO     | mean x: 1764170505.797089
[2025-11-26 20:16:09] 2025-11-27 01:15:37,306 | INFO     | mean y: 2877695.9186643837
[2025-11-26 20:16:09] 2025-11-27 01:15:37,306 | INFO     | intersect: -13587222745.28681
[2025-11-26 20:16:09] 2025-11-27 01:15:37,307 | INFO     | chi2: 4.54422402272272
[2025-11-26 20:16:09] 2025-11-27 01:15:37,307 | INFO     | current chi2=4.54422402272272 (change=40.227531562632876 %)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,308 | INFO     | sum of square deviations: 487700256621.4137
[2025-11-26 20:16:09] 2025-11-27 01:15:37,332 | INFO     | sum of deviations: 3490267857851.937
[2025-11-26 20:16:09] 2025-11-27 01:15:37,332 | INFO     | mean x: 1764170658.3069646
[2025-11-26 20:16:09] 2025-11-27 01:15:37,333 | INFO     | mean y: 2885305.921754084
[2025-11-26 20:16:09] 2025-11-27 01:15:37,333 | INFO     | intersect: -12622550216.934875
[2025-11-26 20:16:09] 2025-11-27 01:15:37,333 | INFO     | chi2: 2.888019527804532
[2025-11-26 20:16:09] 2025-11-27 01:15:37,334 | INFO     | current chi2=2.888019527804532 (change=36.44636546606379 %)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,335 | INFO     | sum of square deviations: 481436869146.71466
[2025-11-26 20:16:09] 2025-11-27 01:15:37,360 | INFO     | sum of deviations: 3378479429046.9434
[2025-11-26 20:16:09] 2025-11-27 01:15:37,360 | INFO     | mean x: 1764170810.7979274
[2025-11-26 20:16:09] 2025-11-27 01:15:37,360 | INFO     | mean y: 2888025.6450777203
[2025-11-26 20:16:09] 2025-11-27 01:15:37,360 | INFO     | intersect: -12377166713.763609
[2025-11-26 20:16:09] 2025-11-27 01:15:37,361 | INFO     | chi2: 2.7546065146795176
[2025-11-26 20:16:09] 2025-11-27 01:15:37,361 | INFO     | current chi2=2.7546065146795176 (change=4.619532930458915 %)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,361 | INFO     | left removable region: 60
[2025-11-26 20:16:09] 2025-11-27 01:15:37,362 | INFO     | sum of square deviations: 437919818079.2795
[2025-11-26 20:16:09] 2025-11-27 01:15:37,387 | INFO     | sum of deviations: 3306464500556.553
[2025-11-26 20:16:09] 2025-11-27 01:15:37,388 | INFO     | mean x: 1764171542.7094474
[2025-11-26 20:16:09] 2025-11-27 01:15:37,388 | INFO     | mean y: 2906527.1274509802
[2025-11-26 20:16:09] 2025-11-27 01:15:37,388 | INFO     | intersect: -13317272962.454042
[2025-11-26 20:16:09] 2025-11-27 01:15:37,389 | INFO     | chi2: 0.12655684503876424
[2025-11-26 20:16:09] 2025-11-27 01:15:37,389 | INFO     | current memory leak: 7.55 B/s (using 1122 data points, chi2=0.13)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,390 | INFO     | could have reported an average CPU frequency of 3282 MHz (43 samples)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,391 | INFO     | ..............................
[2025-11-26 20:16:09] 2025-11-27 01:15:37,391 | INFO     | . Timing measurements:
[2025-11-26 20:16:09] 2025-11-27 01:15:37,391 | INFO     | . get job = 0 s
[2025-11-26 20:16:09] 2025-11-27 01:15:37,391 | INFO     | . initial setup = 10 s
[2025-11-26 20:16:09] 2025-11-27 01:15:37,391 | INFO     | . payload setup = 75 s
[2025-11-26 20:16:09] 2025-11-27 01:15:37,391 | INFO     | . stage-in = 0 s
[2025-11-26 20:16:09] 2025-11-27 01:15:37,391 | INFO     | . payload execution = 72502 s
[2025-11-26 20:16:09] 2025-11-27 01:15:37,391 | INFO     | . stage-out = 4 s
[2025-11-26 20:16:09] 2025-11-27 01:15:37,391 | INFO     | . log creation = 0 s
[2025-11-26 20:16:09] 2025-11-27 01:15:37,391 | INFO     | ..............................
[2025-11-26 20:16:09] 2025-11-27 01:15:37,543 | INFO     | 
[2025-11-26 20:16:09] 2025-11-27 01:15:37,543 | INFO     | job summary report
[2025-11-26 20:16:09] 2025-11-27 01:15:37,543 | INFO     | --------------------------------------------------
[2025-11-26 20:16:09] 2025-11-27 01:15:37,543 | INFO     | PanDA job id: 6896713844
[2025-11-26 20:16:09] 2025-11-27 01:15:37,543 | INFO     | task id: 47556161
[2025-11-26 20:16:09] 2025-11-27 01:15:37,543 | INFO     | errors: (none)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,543 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 20:16:09] 2025-11-27 01:15:37,544 | INFO     | pilot state: finished 
[2025-11-26 20:16:09] 2025-11-27 01:15:37,544 | INFO     | transexitcode: 0
[2025-11-26 20:16:09] 2025-11-27 01:15:37,544 | INFO     | exeerrorcode: 0
[2025-11-26 20:16:09] 2025-11-27 01:15:37,544 | INFO     | exeerrordiag: 
[2025-11-26 20:16:09] 2025-11-27 01:15:37,544 | INFO     | exitcode: 0
[2025-11-26 20:16:09] 2025-11-27 01:15:37,544 | INFO     | exitmsg: OK
[2025-11-26 20:16:09] 2025-11-27 01:15:37,544 | INFO     | cpuconsumptiontime: 194532 s
[2025-11-26 20:16:09] 2025-11-27 01:15:37,546 | INFO     | nevents: 1000
[2025-11-26 20:16:09] 2025-11-27 01:15:37,547 | INFO     | neventsw: 0
[2025-11-26 20:16:09] 2025-11-27 01:15:37,547 | INFO     | pid: 1133821
[2025-11-26 20:16:09] 2025-11-27 01:15:37,547 | INFO     | pgrp: 1133821
[2025-11-26 20:16:09] 2025-11-27 01:15:37,547 | INFO     | corecount: 8
[2025-11-26 20:16:09] 2025-11-27 01:15:37,547 | INFO     | event service: False
[2025-11-26 20:16:09] 2025-11-27 01:15:37,547 | INFO     | sizes: {0: 2284035, 1: 2284290, 12: 2284290, 23: 2284318, 34: 2284346, 44: 2284374, 52: 2284792, 55: 2284820, 72582: 2343690, 72588: 2352712, 72589: 2352768, 72595
[2025-11-26 20:16:09] 2025-11-27 01:15:37,547 | INFO     | --------------------------------------------------
[2025-11-26 20:16:09] 2025-11-27 01:15:37,547 | INFO     | 
[2025-11-26 20:16:09] 2025-11-27 01:15:37,547 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 20:16:09] 2025-11-27 01:15:37,615 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,615 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,615 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,615 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,615 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,616 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,617 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,617 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 20:16:09] 2025-11-27 01:15:37,617 | INFO     | job 6896713844 has completed (purged errors)
[2025-11-26 20:16:09] 2025-11-27 01:15:37,617 | INFO     | overall cleanup function is called
[2025-11-26 20:16:09] 2025-11-27 01:15:38,637 | INFO     | --- collectZombieJob: --- 10, [1133821]
[2025-11-26 20:16:09] 2025-11-27 01:15:38,637 | INFO     | zombie collector waiting for pid 1133821
[2025-11-26 20:16:09] 2025-11-27 01:15:38,637 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 20:16:09] 2025-11-27 01:15:38,637 | INFO     | collected zombie processes
[2025-11-26 20:16:09] 2025-11-27 01:15:38,637 | INFO     | will attempt to kill all subprocesses of pid=1133821
[2025-11-26 20:16:09] 2025-11-27 01:15:39,094 | INFO     | process IDs to be killed: [1133821] (in reverse order)
[2025-11-26 20:16:09] 2025-11-27 01:15:39,202 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 20:16:09] 2025-11-27 01:15:39,202 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 20:16:09] 2025-11-27 01:15:39,219 | INFO     | did not find any defunct processes belonging to 1133821
[2025-11-26 20:16:09] 2025-11-27 01:15:39,241 | INFO     | did not find any defunct processes belonging to 1133821
[2025-11-26 20:16:09] 2025-11-27 01:15:39,243 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 20:16:09] 2025-11-27 01:15:39,243 | INFO     | ready for new job
[2025-11-26 20:16:09] 2025-11-27 01:15:39,243 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 20:16:09] 2025-11-27 01:15:39,247 | INFO     | ***************************************
[2025-11-26 20:16:09] 2025-11-27 01:15:39,248 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 20:16:09] 2025-11-27 01:15:39,248 | INFO     | ***************************************
[2025-11-26 20:16:09] 2025-11-27 01:15:39,248 | INFO     | 
[2025-11-26 20:16:09] 2025-11-27 01:15:39,251 | INFO     | architecture information:
[2025-11-26 20:16:09] 2025-11-27 01:15:39,253 | INFO     | executing command: cat /etc/os-release
[2025-11-26 20:16:09] 2025-11-27 01:15:39,274 | INFO     | cat /etc/os-release:
[2025-11-26 20:16:09] NAME="CentOS Linux"
[2025-11-26 20:16:09] VERSION="7 (Core)"
[2025-11-26 20:16:09] ID="centos"
[2025-11-26 20:16:09] ID_LIKE="rhel fedora"
[2025-11-26 20:16:09] VERSION_ID="7"
[2025-11-26 20:16:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 20:16:09] ANSI_COLOR="0;31"
[2025-11-26 20:16:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 20:16:09] HOME_URL="https://www.centos.org/"
[2025-11-26 20:16:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 20:16:09] 
[2025-11-26 20:16:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 20:16:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 20:16:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 20:16:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 20:16:09] 
[2025-11-26 20:16:09] 2025-11-27 01:15:39,274 | INFO     | ***************************************
[2025-11-26 20:16:09] 2025-11-27 01:15:39,778 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 20:16:09] 2025-11-27 01:15:39,811 | INFO     | sufficient remaining disk space (88828018688 B)
[2025-11-26 20:16:09] 2025-11-27 01:15:39,812 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 20:16:09] 2025-11-27 01:15:39,812 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 20:16:09] 2025-11-27 01:15:39,812 | INFO     | update_server=False
[2025-11-26 20:16:09] 2025-11-27 01:15:39,812 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 20:16:09] 2025-11-27 01:15:39,812 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:16:09] 2025-11-27 01:15:39,812 | INFO     | aborting loop
[2025-11-26 20:16:09] 2025-11-27 01:15:40,132 | INFO     | all payload control threads have been joined
[2025-11-26 20:16:09] 2025-11-27 01:15:40,386 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 20:16:09] 2025-11-27 01:15:40,630 | INFO     | all job control threads have been joined
[2025-11-26 20:16:09] 2025-11-27 01:15:40,772 | INFO     | all data control threads have been joined
[2025-11-26 20:16:09] 2025-11-27 01:15:40,818 | INFO     | [job] retrieve thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:40,818 | INFO     | [job] job monitor thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:40,863 | INFO     | [payload] validate_post thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:41,138 | INFO     | [payload] control thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:41,216 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:41,282 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:41,567 | INFO     | [data] copytool_in thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:41,635 | INFO     | [job] control thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:41,638 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:41,777 | INFO     | [data] control thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:41,831 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 20:16:09] 2025-11-27 01:15:41,839 | INFO     | [payload] failed_post thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:41,881 | INFO     | [job] validate thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:41,972 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:42,392 | INFO     | [data] copytool_out thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:42,562 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 20:16:09] 2025-11-27 01:15:43,567 | INFO     | [job] queue monitor thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:45,837 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 20:16:09] 2025-11-27 01:15:48,622 | INFO     | [monitor] cgroup control has ended
[2025-11-26 20:16:09] 2025-11-27 01:15:49,004 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140420992304960)>', '<ExcThread(monitor, started 140420499617536)>']
[2025-11-26 20:16:09] 2025-11-27 01:15:54,029 | INFO     | all workflow threads have been joined
[2025-11-26 20:16:09] 2025-11-27 01:15:54,029 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 20:16:09] 2025-11-27 01:15:54,031 | INFO     | traces error code: 0
[2025-11-26 20:16:09] 2025-11-27 01:15:54,031 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 20:16:09] 2025-11-27 01:16:09,300 | INFO     | PID=1070169 has CPU usage=8.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 20:16:09] 2025-11-27 01:16:09,303 | INFO     | .. there are 34 such processes running
[2025-11-26 20:16:09] 2025-11-27 01:16:09,304 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 20:16:09] 2025-11-27 01:16:09,304 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 20:16:09] 2025-11-27 01:16:09,304 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 20:16:09] 2025-11-27 01:16:09,304 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 20:16:09] 2025-11-27 01:16:09,304 | CRITICAL | thread 'MainThread' is not alive
[2025-11-26 20:16:09] 2025-11-27 01:16:09,304 | INFO     | [monitor] control thread has ended
[2025-11-26 20:16:09] 2025-11-27 01:16:09,435 [wrapper] ==== pilot stdout END ====
[2025-11-26 20:16:09] 2025-11-27 01:16:09,439 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 20:16:09] 2025-11-27 01:16:09,445 [wrapper] pilotpid: 1070169
[2025-11-26 20:16:09] 2025-11-27 01:16:09,449 [wrapper] Pilot exit status: 0
[2025-11-26 20:16:09] 2025-11-27 01:16:09,497 [wrapper] pandaids: 6896713844
[2025-11-26 20:16:09] 2025-11-27 01:16:09,601 [wrapper] cleanup supervisor_pilot 1099623 1070170
[2025-11-26 20:16:09] 2025-11-27 01:16:09,605 [wrapper] Test setup, not cleaning
[2025-11-26 20:16:09] 2025-11-27 01:16:09,615 [wrapper] apfmon messages muted
[2025-11-26 20:16:09] 2025-11-27 01:16:09,618 [wrapper] ==== wrapper stdout END ====
[2025-11-26 20:16:09] 2025-11-27 01:16:09,620 [wrapper] ==== wrapper stderr END ====
[2025-11-26 20:16:09]  *** Error codes and diagnostics ***
[2025-11-26 20:16:09]     "exeErrorCode": 0,
[2025-11-26 20:16:09]     "exeErrorDiag": "",
[2025-11-26 20:16:09]     "pilotErrorCode": 0,
[2025-11-26 20:16:09]     "pilotErrorDiag": "",
[2025-11-26 20:16:09]  *** Listing of results directory ***
[2025-11-26 20:16:09] total 1312468
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 01:03 queuedata.json
[2025-11-26 20:16:09] -rwx------. 1 boincer umatlas     36292 Nov 25 01:04 runpilot2-wrapper.sh
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 01:04 pilot3.tar.gz
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 20:16:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-26 20:16:09] -rw-r--r--. 2 boincer umatlas 408687913 Nov 26 00:01 EVNT.47483658._002115.pool.root.1
[2025-11-26 20:16:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 20:16:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-26 20:16:09] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 00:01 input.tar.gz
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:01 pandaJob.out
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-26 20:16:09] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:08 boinc_task_state.xml
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas      6905 Nov 26 20:13 init_data.xml
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas 907945922 Nov 26 20:14 HITS.47556161._000986.pool.root.1
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas      1054 Nov 26 20:15 memory_monitor_summary.json
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas   1516240 Nov 26 20:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas   2306925 Nov 26 20:15 log.47556161._000986.job.log.tgz.1
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas      8585 Nov 26 20:15 heartbeat.json
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 20:16 boinc_mmap_file
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas        29 Nov 26 20:16 wrapper_checkpoint.txt
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas        95 Nov 26 20:16 pilot_heartbeat.json
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas       893 Nov 26 20:16 pilotlog.txt
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas   9399390 Nov 26 20:16 log.47556161._000986.job.log.1
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas       353 Nov 26 20:16 output.list
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas       620 Nov 26 20:16 runtime_log
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas  11724800 Nov 26 20:16 result.tar.gz
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas       661 Nov 26 20:16 TwDMDmZL1h8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmONJKDmuIXoJm.diag
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 20:16 runtime_log.err
[2025-11-26 20:16:09] -rw-r--r--. 1 boincer umatlas     21224 Nov 26 20:16 stderr.txt
[2025-11-26 20:16:09] HITS file was successfully produced:
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas 907945922 Nov 26 20:14 shared/HITS.pool.root.1
[2025-11-26 20:16:09]  *** Contents of shared directory: ***
[2025-11-26 20:16:09] total 1297836
[2025-11-26 20:16:09] -rw-r--r--. 2 boincer umatlas 408687913 Nov 26 00:01 ATLAS.root_0
[2025-11-26 20:16:09] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 20:16:09] -rw-r--r--. 2 boincer umatlas    590105 Nov 26 00:01 input.tar.gz
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas 907945922 Nov 26 20:14 HITS.pool.root.1
[2025-11-26 20:16:09] -rw-------. 1 boincer umatlas  11724800 Nov 26 20:16 result.tar.gz
20:16:11 (1046535): run_atlas exited; CPU time 194982.947840
20:16:11 (1046535): called boinc_finish(0)

</stderr_txt>
]]>

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