Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:47 (1714935): wrapper (7.7.26015): starting
00:01:47 (1714935): wrapper: running run_atlas (--nthreads 8)
[2025-11-26 00:01:47] Arguments: --nthreads 8
[2025-11-26 00:01:47] Threads: 8
[2025-11-26 00:01:47] Checking for CVMFS
[2025-11-26 00:01:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:49] 2.13.2.0 6513 33395 422408 153309 0 164 29139289 40960000 16766 16776704 0 85381934 99.610 84236738 38006 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:01:49] CVMFS is ok
[2025-11-26 00:01:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:49] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:49] Checking for apptainer binary...
[2025-11-26 00:01:50] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:50] Running /usr/bin/apptainer --version
[2025-11-26 00:01:50] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:51] c-206-38.aglt2.org
[2025-11-26 00:01:51] apptainer works
[2025-11-26 00:01:51] Set ATHENA_PROC_NUMBER=8
[2025-11-26 00:01:51] Set ATHENA_CORE_NUMBER=8
[2025-11-26 00:01:51] Starting ATLAS job with PandaID=6895386988
[2025-11-26 00:01:51] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:17:44]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:17:44] 2025-11-27 02:16:32,414 | INFO     | monitor loop #5092: job 0:6895386988 is in state 'finished'
[2025-11-26 21:17:44] 2025-11-27 02:16:32,414 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:44] 2025-11-27 02:16:33,666 | INFO     | time since job start (76388s) is within the limit (172800.0s)
[2025-11-26 21:17:44] 2025-11-27 02:16:34,919 | INFO     | monitor loop #5093: job 0:6895386988 is in state 'finished'
[2025-11-26 21:17:44] 2025-11-27 02:16:34,919 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:44] 2025-11-27 02:16:35,673 | INFO     | time since job start (76390s) is within the limit (172800.0s)
[2025-11-26 21:17:44] 2025-11-27 02:16:37,424 | INFO     | monitor loop #5094: job 0:6895386988 is in state 'finished'
[2025-11-26 21:17:44] 2025-11-27 02:16:37,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:44] 2025-11-27 02:16:37,683 | INFO     | time since job start (76392s) is within the limit (172800.0s)
[2025-11-26 21:17:44] 2025-11-27 02:16:39,690 | INFO     | time since job start (76394s) is within the limit (172800.0s)
[2025-11-26 21:17:44] 2025-11-27 02:16:39,932 | INFO     | monitor loop #5095: job 0:6895386988 is in state 'finished'
[2025-11-26 21:17:44] 2025-11-27 02:16:39,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:44] 2025-11-27 02:16:41,726 | INFO     | time since job start (76396s) is within the limit (172800.0s)
[2025-11-26 21:17:44] 2025-11-27 02:16:42,437 | INFO     | monitor loop #5096: job 0:6895386988 is in state 'finished'
[2025-11-26 21:17:44] 2025-11-27 02:16:42,437 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:17:44] 2025-11-27 02:16:43,735 | INFO     | time since job start (76398s) is within the limit (172800.0s)
[2025-11-26 21:17:44] 2025-11-27 02:16:43,840 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 21:17:44] 2025-11-27 02:16:43,855 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 3245.422906250001
[2025-11-26 21:17:44] 2025-11-27 02:16:43,880 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6895386988/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:17:44] 2025-11-27 02:16:43,881 | INFO     | extracted standard info from prmon json
[2025-11-26 21:17:44] 2025-11-27 02:16:43,881 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:17:44] 2025-11-27 02:16:43,881 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:17:44] 2025-11-27 02:16:43,922 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:17:44] 2025-11-27 02:16:43,923 | INFO     | sum of square deviations: 602690886377.6533
[2025-11-26 21:17:44] 2025-11-27 02:16:43,953 | INFO     | sum of deviations: 5335859961997.961
[2025-11-26 21:17:44] 2025-11-27 02:16:43,953 | INFO     | mean x: 1764171692.633814
[2025-11-26 21:17:44] 2025-11-27 02:16:43,954 | INFO     | mean y: 2847644.470352564
[2025-11-26 21:17:44] 2025-11-27 02:16:43,954 | INFO     | intersect: -15616059681.957031
[2025-11-26 21:17:44] 2025-11-27 02:16:43,955 | INFO     | chi2: 28.79288703071197
[2025-11-26 21:17:44] 2025-11-27 02:16:43,956 | INFO     | sum of square deviations: 595475964056.1991
[2025-11-26 21:17:44] 2025-11-27 02:16:43,987 | INFO     | sum of deviations: 5758296332118.807
[2025-11-26 21:17:44] 2025-11-27 02:16:43,987 | INFO     | mean x: 1764171540.1383748
[2025-11-26 21:17:44] 2025-11-27 02:16:43,987 | INFO     | mean y: 2856570.6057924377
[2025-11-26 21:17:44] 2025-11-27 02:16:43,987 | INFO     | intersect: -17056811866.067585
[2025-11-26 21:17:44] 2025-11-27 02:16:43,988 | INFO     | chi2: 25.47719130249646
[2025-11-26 21:17:44] 2025-11-27 02:16:43,988 | INFO     | current chi2=25.47719130249646 (change=11.515676509544937 %)
[2025-11-26 21:17:44] 2025-11-27 02:16:43,988 | INFO     | right removable region: 1242
[2025-11-26 21:17:44] 2025-11-27 02:16:43,989 | INFO     | sum of square deviations: 595475100906.1991
[2025-11-26 21:17:44] 2025-11-27 02:16:44,122 | INFO     | sum of deviations: 4803913392098.22
[2025-11-26 21:17:44] 2025-11-27 02:16:44,122 | INFO     | mean x: 1764171845.1383748
[2025-11-26 21:17:44] 2025-11-27 02:16:44,122 | INFO     | mean y: 2858886.6033789217
[2025-11-26 21:17:44] 2025-11-27 02:16:44,123 | INFO     | intersect: -14229354584.498346
[2025-11-26 21:17:44] 2025-11-27 02:16:44,156 | INFO     | chi2: 23.725403000835655
[2025-11-26 21:17:44] 2025-11-27 02:16:44,156 | INFO     | current chi2=23.725403000835655 (change=17.599777418885008 %)
[2025-11-26 21:17:44] 2025-11-27 02:16:44,156 | INFO     | left removable region: 10
[2025-11-26 21:17:44] 2025-11-27 02:16:44,157 | INFO     | sum of square deviations: 579804590132.8167
[2025-11-26 21:17:44] 2025-11-27 02:16:44,225 | INFO     | sum of deviations: 4814747131083.95
[2025-11-26 21:17:44] 2025-11-27 02:16:44,225 | INFO     | mean x: 1764171814.648539
[2025-11-26 21:17:44] 2025-11-27 02:16:44,225 | INFO     | mean y: 2879960.833603896
[2025-11-26 21:17:44] 2025-11-27 02:16:44,226 | INFO     | intersect: -14646954358.988659
[2025-11-26 21:17:44] 2025-11-27 02:16:44,227 | INFO     | chi2: 15.7224146935676
[2025-11-26 21:17:44] 2025-11-27 02:16:44,227 | INFO     | current memory leak: 8.30 B/s (using 1232 data points, chi2=15.72)
[2025-11-26 21:17:44] 2025-11-27 02:16:44,229 | INFO     | could have reported an average CPU frequency of 3271 MHz (45 samples)
[2025-11-26 21:17:44] 2025-11-27 02:16:44,229 | INFO     | ..............................
[2025-11-26 21:17:44] 2025-11-27 02:16:44,229 | INFO     | . Timing measurements:
[2025-11-26 21:17:44] 2025-11-27 02:16:44,229 | INFO     | . get job = 1 s
[2025-11-26 21:17:44] 2025-11-27 02:16:44,230 | INFO     | . initial setup = 6 s
[2025-11-26 21:17:44] 2025-11-27 02:16:44,230 | INFO     | . payload setup = 75 s
[2025-11-26 21:17:44] 2025-11-27 02:16:44,230 | INFO     | . stage-in = 0 s
[2025-11-26 21:17:44] 2025-11-27 02:16:44,230 | INFO     | . payload execution = 76165 s
[2025-11-26 21:17:44] 2025-11-27 02:16:44,230 | INFO     | . stage-out = 4 s
[2025-11-26 21:17:44] 2025-11-27 02:16:44,230 | INFO     | . log creation = 0 s
[2025-11-26 21:17:44] 2025-11-27 02:16:44,230 | INFO     | ..............................
[2025-11-26 21:17:44] 2025-11-27 02:16:44,661 | INFO     | 
[2025-11-26 21:17:44] 2025-11-27 02:16:44,662 | INFO     | job summary report
[2025-11-26 21:17:44] 2025-11-27 02:16:44,662 | INFO     | --------------------------------------------------
[2025-11-26 21:17:44] 2025-11-27 02:16:44,662 | INFO     | PanDA job id: 6895386988
[2025-11-26 21:17:44] 2025-11-27 02:16:44,662 | INFO     | task id: 47556149
[2025-11-26 21:17:44] 2025-11-27 02:16:44,662 | INFO     | errors: (none)
[2025-11-26 21:17:44] 2025-11-27 02:16:44,662 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:17:44] 2025-11-27 02:16:44,662 | INFO     | pilot state: finished 
[2025-11-26 21:17:44] 2025-11-27 02:16:44,662 | INFO     | transexitcode: 0
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | exeerrorcode: 0
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | exeerrordiag: 
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | exitcode: 0
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | exitmsg: OK
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | cpuconsumptiontime: 195468 s
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | nevents: 1000
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | neventsw: 0
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | pid: 1748323
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | pgrp: 1748323
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | corecount: 8
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | event service: False
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | sizes: {0: 2284088, 1: 2284144, 2: 2284172, 3: 2284399, 4: 2284399, 16: 2284427, 27: 2284583, 38: 2284611, 49: 2284639, 55: 2284929, 61: 2284957, 76246: 2346117, 7
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | --------------------------------------------------
[2025-11-26 21:17:44] 2025-11-27 02:16:44,663 | INFO     | 
[2025-11-26 21:17:44] 2025-11-27 02:16:44,664 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 21:17:44] 2025-11-27 02:16:44,770 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,770 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,770 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,770 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,770 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,770 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,770 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:17:44] 2025-11-27 02:16:44,771 | INFO     | job 6895386988 has completed (purged errors)
[2025-11-26 21:17:44] 2025-11-27 02:16:44,772 | INFO     | overall cleanup function is called
[2025-11-26 21:17:44] 2025-11-27 02:16:45,789 | INFO     | --- collectZombieJob: --- 10, [1748323]
[2025-11-26 21:17:44] 2025-11-27 02:16:45,789 | INFO     | zombie collector waiting for pid 1748323
[2025-11-26 21:17:44] 2025-11-27 02:16:45,789 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:17:44] 2025-11-27 02:16:45,789 | INFO     | collected zombie processes
[2025-11-26 21:17:44] 2025-11-27 02:16:45,789 | INFO     | will attempt to kill all subprocesses of pid=1748323
[2025-11-26 21:17:44] 2025-11-27 02:16:46,415 | INFO     | process IDs to be killed: [1748323] (in reverse order)
[2025-11-26 21:17:44] 2025-11-27 02:16:47,057 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:17:44] 2025-11-27 02:16:47,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:17:44] 2025-11-27 02:16:47,071 | INFO     | did not find any defunct processes belonging to 1748323
[2025-11-26 21:17:44] 2025-11-27 02:16:47,085 | INFO     | did not find any defunct processes belonging to 1748323
[2025-11-26 21:17:44] 2025-11-27 02:16:47,087 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:17:44] 2025-11-27 02:16:47,087 | INFO     | ready for new job
[2025-11-26 21:17:44] 2025-11-27 02:16:47,087 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:17:44] 2025-11-27 02:16:47,093 | INFO     | ***************************************
[2025-11-26 21:17:44] 2025-11-27 02:16:47,093 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:17:44] 2025-11-27 02:16:47,093 | INFO     | ***************************************
[2025-11-26 21:17:44] 2025-11-27 02:16:47,093 | INFO     | 
[2025-11-26 21:17:44] 2025-11-27 02:16:47,097 | INFO     | architecture information:
[2025-11-26 21:17:44] 2025-11-27 02:16:47,098 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:17:44] 2025-11-27 02:16:47,176 | INFO     | cat /etc/os-release:
[2025-11-26 21:17:44] NAME="CentOS Linux"
[2025-11-26 21:17:44] VERSION="7 (Core)"
[2025-11-26 21:17:44] ID="centos"
[2025-11-26 21:17:44] ID_LIKE="rhel fedora"
[2025-11-26 21:17:44] VERSION_ID="7"
[2025-11-26 21:17:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:17:44] ANSI_COLOR="0;31"
[2025-11-26 21:17:44] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:17:44] HOME_URL="https://www.centos.org/"
[2025-11-26 21:17:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:17:44] 
[2025-11-26 21:17:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:17:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:17:44] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:17:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:17:44] 
[2025-11-26 21:17:44] 2025-11-27 02:16:47,177 | INFO     | ***************************************
[2025-11-26 21:17:44] 2025-11-27 02:16:47,680 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 21:17:44] 2025-11-27 02:16:47,803 | INFO     | sufficient remaining disk space (78461796352 B)
[2025-11-26 21:17:44] 2025-11-27 02:16:47,804 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:17:44] 2025-11-27 02:16:47,804 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:17:44] 2025-11-27 02:16:47,804 | INFO     | update_server=False
[2025-11-26 21:17:44] 2025-11-27 02:16:47,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:17:44] 2025-11-27 02:16:47,804 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:17:44] 2025-11-27 02:16:47,817 | INFO     | all payload control threads have been joined
[2025-11-26 21:17:44] 2025-11-27 02:16:48,463 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:17:44] 2025-11-27 02:16:48,463 | INFO     | aborting loop
[2025-11-26 21:17:44] 2025-11-27 02:16:48,550 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:17:44] 2025-11-27 02:16:48,820 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:48,821 | INFO     | all data control threads have been joined
[2025-11-26 21:17:44] 2025-11-27 02:16:48,824 | INFO     | [payload] control thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:48,865 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:49,054 | INFO     | [job] validate thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:49,254 | INFO     | all job control threads have been joined
[2025-11-26 21:17:44] 2025-11-27 02:16:49,346 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:17:44] 2025-11-27 02:16:49,404 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:49,455 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:49,467 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:49,469 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:49,542 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:49,826 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:49,830 | INFO     | [data] control thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:50,260 | INFO     | [job] control thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:50,269 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:50,352 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:52,559 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:16:58,051 | INFO     | job.realtimelogging is not enabled
[2025-11-26 21:17:44] 2025-11-27 02:16:59,057 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:17:44] 2025-11-27 02:17:17,483 | INFO     | PID=1724452 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:17:44] 2025-11-27 02:17:17,483 | INFO     | .. there are 20 such processes running
[2025-11-26 21:17:44] 2025-11-27 02:17:17,483 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:17:44] 2025-11-27 02:17:17,483 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:17:44] 2025-11-27 02:17:17,483 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:17:44] 2025-11-27 02:17:37,019 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:17:44] 2025-11-27 02:17:38,032 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139950471825216)>', '<ExcThread(monitor, started 139949756114688)>']
[2025-11-26 21:17:44] 2025-11-27 02:17:38,613 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:17:44] 2025-11-27 02:17:38,613 | INFO     | [monitor] control thread has ended
[2025-11-26 21:17:44] 2025-11-27 02:17:43,058 | INFO     | all workflow threads have been joined
[2025-11-26 21:17:44] 2025-11-27 02:17:43,060 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:17:44] 2025-11-27 02:17:43,061 | INFO     | traces error code: 0
[2025-11-26 21:17:44] 2025-11-27 02:17:43,061 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:17:44] 2025-11-27 02:17:43,477 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:17:44] 2025-11-27 02:17:43,486 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:17:44] 2025-11-27 02:17:43,489 [wrapper] pilotpid: 1724452
[2025-11-26 21:17:44] 2025-11-27 02:17:43,492 [wrapper] Pilot exit status: 0
[2025-11-26 21:17:44] 2025-11-27 02:17:43,564 [wrapper] pandaids: 6895386988
[2025-11-26 21:17:44] 2025-11-27 02:17:43,768 [wrapper] cleanup supervisor_pilot 1054513 1724454
[2025-11-26 21:17:44] 2025-11-27 02:17:43,800 [wrapper] Test setup, not cleaning
[2025-11-26 21:17:44] 2025-11-27 02:17:43,804 [wrapper] apfmon messages muted
[2025-11-26 21:17:44] 2025-11-27 02:17:43,807 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:17:44] 2025-11-27 02:17:43,813 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:17:44]  *** Error codes and diagnostics ***
[2025-11-26 21:17:44]     "exeErrorCode": 0,
[2025-11-26 21:17:44]     "exeErrorDiag": "",
[2025-11-26 21:17:44]     "pilotErrorCode": 0,
[2025-11-26 21:17:44]     "pilotErrorDiag": "",
[2025-11-26 21:17:44]  *** Listing of results directory ***
[2025-11-26 21:17:44] total 1328884
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 01:20 pilot3.tar.gz
[2025-11-26 21:17:44] -rwx------. 1 boincer umatlas     36292 Nov 24 01:23 runpilot2-wrapper.sh
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 01:23 queuedata.json
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:17:44] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-26 21:17:44] -rw-r--r--. 2 boincer umatlas 411992958 Nov 26 00:01 EVNT.47483658._001257.pool.root.1
[2025-11-26 21:17:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 21:17:44] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-26 21:17:44] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:01 input.tar.gz
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:01 pandaJob.out
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-26 21:17:44] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas       533 Nov 26 20:56 boinc_task_state.xml
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas      6904 Nov 26 21:12 init_data.xml
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas 919399765 Nov 26 21:13 HITS.47556149._002439.pool.root.1
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas      1056 Nov 26 21:15 memory_monitor_summary.json
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:15 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas   2384743 Nov 26 21:16 log.47556149._002439.job.log.tgz.1
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas        95 Nov 26 21:16 pilot_heartbeat.json
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas      8591 Nov 26 21:16 heartbeat.json
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas        29 Nov 26 21:17 wrapper_checkpoint.txt
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 21:17 boinc_mmap_file
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas      4896 Nov 26 21:17 pilotlog.txt
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas  10342608 Nov 26 21:17 log.47556149._002439.job.log.1
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas       353 Nov 26 21:17 output.list
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:17 runtime_log
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas  12748800 Nov 26 21:17 result.tar.gz
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas       661 Nov 26 21:17 xLAMDmv9eh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnVLKDmYalgGn.diag
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 21:17 runtime_log.err
[2025-11-26 21:17:44] -rw-r--r--. 1 boincer umatlas     21784 Nov 26 21:17 stderr.txt
[2025-11-26 21:17:44] HITS file was successfully produced:
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas 919399765 Nov 26 21:13 shared/HITS.pool.root.1
[2025-11-26 21:17:44]  *** Contents of shared directory: ***
[2025-11-26 21:17:44] total 1313248
[2025-11-26 21:17:44] -rw-r--r--. 2 boincer umatlas 411992958 Nov 26 00:01 ATLAS.root_0
[2025-11-26 21:17:44] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 21:17:44] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:01 input.tar.gz
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas 919399765 Nov 26 21:13 HITS.pool.root.1
[2025-11-26 21:17:44] -rw-------. 1 boincer umatlas  12748800 Nov 26 21:17 result.tar.gz
21:17:45 (1714935): run_atlas exited; CPU time 195534.422101
21:17:45 (1714935): called boinc_finish(0)

</stderr_txt>
]]>

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