Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:42 (353527): wrapper (7.7.26015): starting
00:01:42 (353527): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:42] Arguments: --nthreads 9
[2025-11-26 00:01:42] Threads: 9
[2025-11-26 00:01:42] Checking for CVMFS
[2025-11-26 00:01:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:44] 2.13.2.0 6914 35393 272284 153309 1 550 28468168 40960001 25744 16776704 0 133802575 99.627 129059566 36844 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:01:44] CVMFS is ok
[2025-11-26 00:01:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:44] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:44] Checking for apptainer binary...
[2025-11-26 00:01:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:44] Running /usr/bin/apptainer --version
[2025-11-26 00:01:44] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:44] c-212-1.aglt2.org
[2025-11-26 00:01:44] apptainer works
[2025-11-26 00:01:44] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:44] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:45] Starting ATLAS job with PandaID=6896044240
[2025-11-26 00:01:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
23:40:06 (353527): BOINC client no longer exists - exiting
23:40:06 (353527): timer handler: client dead, exiting
00:01:15 (1602592): wrapper (7.7.26015): starting
00:01:15 (1602592): wrapper: running run_atlas (--nthreads 12)
[2025-11-27 00:01:15] Arguments: --nthreads 12
[2025-11-27 00:01:15] Threads: 12
[2025-11-27 00:01:15] This job has been restarted, cleaning up previous attempt
[2025-11-27 00:01:16] Checking for CVMFS
[2025-11-27 00:01:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-27 00:01:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-27 00:01:17] Running cvmfs_config stat atlas.cern.ch
[2025-11-27 00:01:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-27 00:01:18] 2.13.2.0 6914 36833 268288 153347 0 383 35574492 40960000 25515 16776704 0 143065350 99.622 142553699 37177 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-27 00:01:18] CVMFS is ok
[2025-11-27 00:01:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-27 00:01:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-27 00:01:18] Further information can be found at the LHC@home message board.
[2025-11-27 00:01:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-27 00:01:18] Checking for apptainer binary...
[2025-11-27 00:01:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-27 00:01:18] Running /usr/bin/apptainer --version
[2025-11-27 00:01:18] apptainer version 1.4.4-1.el9
[2025-11-27 00:01:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-27 00:01:19] c-212-1.aglt2.org
[2025-11-27 00:01:19] apptainer works
[2025-11-27 00:01:19] Set ATHENA_PROC_NUMBER=12
[2025-11-27 00:01:19] Set ATHENA_CORE_NUMBER=12
[2025-11-27 00:01:19] Starting ATLAS job with PandaID=6896044240
[2025-11-27 00:01:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/9 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 20:44:38]  *** The last 200 lines of the pilot log: ***
[2025-11-27 20:44:38] 2025-11-28 01:44:03,650 | INFO     | fitting pss+swap vs Time
[2025-11-27 20:44:38] 2025-11-28 01:44:03,660 | INFO     | sum of square deviations: 563063341855.2493
[2025-11-27 20:44:38] 2025-11-28 01:44:03,679 | INFO     | time since job start (74515s) is within the limit (172800.0s)
[2025-11-27 20:44:38] 2025-11-28 01:44:03,689 | INFO     | sum of deviations: 6603918955667.331
[2025-11-27 20:44:38] 2025-11-28 01:44:03,689 | INFO     | mean x: 1764257026.3491802
[2025-11-27 20:44:38] 2025-11-28 01:44:03,689 | INFO     | mean y: 3390451.276229508
[2025-11-27 20:44:38] 2025-11-28 01:44:03,689 | INFO     | intersect: -20688793807.40321
[2025-11-27 20:44:38] 2025-11-28 01:44:03,690 | INFO     | chi2: 12.097248911907387
[2025-11-27 20:44:38] 2025-11-28 01:44:03,691 | INFO     | sum of square deviations: 556169444833.082
[2025-11-27 20:44:38] 2025-11-28 01:44:03,719 | INFO     | sum of deviations: 7129016546686.727
[2025-11-27 20:44:38] 2025-11-28 01:44:03,719 | INFO     | mean x: 1764256873.85679
[2025-11-27 20:44:38] 2025-11-28 01:44:03,719 | INFO     | mean y: 3402066.711111111
[2025-11-27 20:44:38] 2025-11-28 01:44:03,719 | INFO     | intersect: -22610958652.270126
[2025-11-27 20:44:38] 2025-11-28 01:44:03,720 | INFO     | chi2: 8.422741890366797
[2025-11-27 20:44:38] 2025-11-28 01:44:03,721 | INFO     | current chi2=8.422741890366797 (change=30.374732704092356 %)
[2025-11-27 20:44:38] 2025-11-28 01:44:03,722 | INFO     | sum of square deviations: 549331838647.45135
[2025-11-27 20:44:38] 2025-11-28 01:44:03,750 | INFO     | sum of deviations: 7247970347192.523
[2025-11-27 20:44:38] 2025-11-28 01:44:03,750 | INFO     | mean x: 1764256721.3619835
[2025-11-27 20:44:38] 2025-11-28 01:44:03,750 | INFO     | mean y: 3404712.437190083
[2025-11-27 20:44:38] 2025-11-28 01:44:03,750 | INFO     | intersect: -23274474888.991383
[2025-11-27 20:44:38] 2025-11-28 01:44:03,751 | INFO     | chi2: 7.833851183705104
[2025-11-27 20:44:38] 2025-11-28 01:44:03,751 | INFO     | current chi2=7.833851183705104 (change=6.991674615308062 %)
[2025-11-27 20:44:38] 2025-11-28 01:44:03,751 | INFO     | right removable region: 1209
[2025-11-27 20:44:38] 2025-11-28 01:44:03,752 | INFO     | sum of square deviations: 556168068673.0815
[2025-11-27 20:44:38] 2025-11-28 01:44:03,780 | INFO     | sum of deviations: 6024087428532.984
[2025-11-27 20:44:38] 2025-11-28 01:44:03,780 | INFO     | mean x: 1764257178.85679
[2025-11-27 20:44:38] 2025-11-28 01:44:03,780 | INFO     | mean y: 3403275.0
[2025-11-27 20:44:38] 2025-11-28 01:44:03,780 | INFO     | intersect: -19105999242.851982
[2025-11-27 20:44:38] 2025-11-28 01:44:03,781 | INFO     | chi2: 7.912689427371483
[2025-11-27 20:44:38] 2025-11-28 01:44:03,782 | INFO     | current chi2=7.912689427371483 (change=34.59100093755217 %)
[2025-11-27 20:44:38] 2025-11-28 01:44:03,782 | INFO     | sum of square deviations: 549329308178.2713
[2025-11-27 20:44:38] 2025-11-28 01:44:03,809 | INFO     | sum of deviations: 5589923576708.712
[2025-11-27 20:44:38] 2025-11-28 01:44:03,810 | INFO     | mean x: 1764257331.3644629
[2025-11-27 20:44:38] 2025-11-28 01:44:03,810 | INFO     | mean y: 3412955.379338843
[2025-11-27 20:44:38] 2025-11-28 01:44:03,810 | INFO     | intersect: -17949504366.073524
[2025-11-27 20:44:38] 2025-11-28 01:44:03,811 | INFO     | chi2: 5.804373421385409
[2025-11-27 20:44:38] 2025-11-28 01:44:03,811 | INFO     | current chi2=5.804373421385409 (change=26.64474607954423 %)
[2025-11-27 20:44:38] 2025-11-28 01:44:03,812 | INFO     | sum of square deviations: 542547343995.4888
[2025-11-27 20:44:38] 2025-11-28 01:44:03,833 | INFO     | sum of deviations: 5344158133107.877
[2025-11-27 20:44:38] 2025-11-28 01:44:03,833 | INFO     | mean x: 1764257483.86639
[2025-11-27 20:44:38] 2025-11-28 01:44:03,833 | INFO     | mean y: 3418476.614107884
[2025-11-27 20:44:38] 2025-11-28 01:44:03,833 | INFO     | intersect: -17374734942.895405
[2025-11-27 20:44:38] 2025-11-28 01:44:03,834 | INFO     | chi2: 5.135757920436515
[2025-11-27 20:44:38] 2025-11-28 01:44:03,834 | INFO     | current chi2=5.135757920436515 (change=11.519167572600908 %)
[2025-11-27 20:44:38] 2025-11-28 01:44:03,834 | INFO     | left removable region: 30
[2025-11-27 20:44:38] 2025-11-28 01:44:03,835 | INFO     | sum of square deviations: 508181175181.08093
[2025-11-27 20:44:38] 2025-11-28 01:44:03,856 | INFO     | sum of deviations: 5517492926182.318
[2025-11-27 20:44:38] 2025-11-28 01:44:03,856 | INFO     | mean x: 1764257605.8837998
[2025-11-27 20:44:38] 2025-11-28 01:44:03,857 | INFO     | mean y: 3443447.6081424938
[2025-11-27 20:44:38] 2025-11-28 01:44:03,857 | INFO     | intersect: -19151691248.12038
[2025-11-27 20:44:38] 2025-11-28 01:44:03,857 | INFO     | chi2: 0.48345346911557374
[2025-11-27 20:44:38] 2025-11-28 01:44:03,857 | INFO     | current memory leak: 10.86 B/s (using 1179 data points, chi2=0.48)
[2025-11-27 20:44:38] 2025-11-28 01:44:03,858 | INFO     | could have reported an average CPU frequency of 3040 MHz (44 samples)
[2025-11-27 20:44:38] 2025-11-28 01:44:03,858 | INFO     | ..............................
[2025-11-27 20:44:38] 2025-11-28 01:44:03,859 | INFO     | . Timing measurements:
[2025-11-27 20:44:38] 2025-11-28 01:44:03,859 | INFO     | . get job = 0 s
[2025-11-27 20:44:38] 2025-11-28 01:44:03,859 | INFO     | . initial setup = 3 s
[2025-11-27 20:44:38] 2025-11-28 01:44:03,859 | INFO     | . payload setup = 27 s
[2025-11-27 20:44:38] 2025-11-28 01:44:03,859 | INFO     | . stage-in = 0 s
[2025-11-27 20:44:38] 2025-11-28 01:44:03,859 | INFO     | . payload execution = 74410 s
[2025-11-27 20:44:38] 2025-11-28 01:44:03,859 | INFO     | . stage-out = 3 s
[2025-11-27 20:44:38] 2025-11-28 01:44:03,859 | INFO     | . log creation = 0 s
[2025-11-27 20:44:38] 2025-11-28 01:44:03,859 | INFO     | ..............................
[2025-11-27 20:44:38] 2025-11-28 01:44:03,916 | INFO     | 
[2025-11-27 20:44:38] 2025-11-28 01:44:03,916 | INFO     | job summary report
[2025-11-27 20:44:38] 2025-11-28 01:44:03,916 | INFO     | --------------------------------------------------
[2025-11-27 20:44:38] 2025-11-28 01:44:03,916 | INFO     | PanDA job id: 6896044240
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | task id: 47556173
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | errors: (none)
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | pilot state: finished 
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | transexitcode: 0
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | exeerrorcode: 0
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | exeerrordiag: 
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | exitcode: 0
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | exitmsg: OK
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | cpuconsumptiontime: 213984 s
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | nevents: 1000
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | neventsw: 0
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | pid: 1634849
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | pgrp: 1634849
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | corecount: 12
[2025-11-27 20:44:38] 2025-11-28 01:44:03,917 | INFO     | event service: False
[2025-11-27 20:44:38] 2025-11-28 01:44:03,918 | INFO     | sizes: {0: 2284310, 11: 2284310, 22: 2284338, 23: 2284628, 32: 2284656, 74442: 2344215, 74445: 2353209, 74449: 2353265, 74458: 2353511}
[2025-11-27 20:44:38] 2025-11-28 01:44:03,918 | INFO     | --------------------------------------------------
[2025-11-27 20:44:38] 2025-11-28 01:44:03,918 | INFO     | 
[2025-11-27 20:44:38] 2025-11-28 01:44:03,918 | INFO     | executing command: ls -lF /tmp/boinchome/slots/9
[2025-11-27 20:44:38] 2025-11-28 01:44:03,937 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,937 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,938 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,939 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,939 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 20:44:38] 2025-11-28 01:44:03,939 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,939 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 20:44:38] 2025-11-28 01:44:03,939 | INFO     | job 6896044240 has completed (purged errors)
[2025-11-27 20:44:38] 2025-11-28 01:44:03,939 | INFO     | overall cleanup function is called
[2025-11-27 20:44:38] 2025-11-28 01:44:04,957 | INFO     | --- collectZombieJob: --- 10, [1634849]
[2025-11-27 20:44:38] 2025-11-28 01:44:04,958 | INFO     | zombie collector waiting for pid 1634849
[2025-11-27 20:44:38] 2025-11-28 01:44:04,958 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 20:44:38] 2025-11-28 01:44:04,958 | INFO     | collected zombie processes
[2025-11-27 20:44:38] 2025-11-28 01:44:04,958 | INFO     | will attempt to kill all subprocesses of pid=1634849
[2025-11-27 20:44:38] 2025-11-28 01:44:05,365 | INFO     | process IDs to be killed: [1634849] (in reverse order)
[2025-11-27 20:44:38] 2025-11-28 01:44:05,503 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 20:44:38] 2025-11-28 01:44:05,503 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 20:44:38] 2025-11-28 01:44:05,522 | INFO     | did not find any defunct processes belonging to 1634849
[2025-11-27 20:44:38] 2025-11-28 01:44:05,534 | INFO     | did not find any defunct processes belonging to 1634849
[2025-11-27 20:44:38] 2025-11-28 01:44:05,536 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 20:44:38] 2025-11-28 01:44:05,536 | INFO     | ready for new job
[2025-11-27 20:44:38] 2025-11-28 01:44:05,536 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 20:44:38] 2025-11-28 01:44:05,540 | INFO     | ***************************************
[2025-11-27 20:44:38] 2025-11-28 01:44:05,540 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 20:44:38] 2025-11-28 01:44:05,540 | INFO     | ***************************************
[2025-11-27 20:44:38] 2025-11-28 01:44:05,540 | INFO     | 
[2025-11-27 20:44:38] 2025-11-28 01:44:05,544 | INFO     | architecture information:
[2025-11-27 20:44:38] 2025-11-28 01:44:05,544 | INFO     | executing command: cat /etc/os-release
[2025-11-27 20:44:38] 2025-11-28 01:44:05,562 | INFO     | cat /etc/os-release:
[2025-11-27 20:44:38] NAME="CentOS Linux"
[2025-11-27 20:44:38] VERSION="7 (Core)"
[2025-11-27 20:44:38] ID="centos"
[2025-11-27 20:44:38] ID_LIKE="rhel fedora"
[2025-11-27 20:44:38] VERSION_ID="7"
[2025-11-27 20:44:38] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 20:44:38] ANSI_COLOR="0;31"
[2025-11-27 20:44:38] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 20:44:38] HOME_URL="https://www.centos.org/"
[2025-11-27 20:44:38] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 20:44:38] 
[2025-11-27 20:44:38] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 20:44:38] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 20:44:38] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 20:44:38] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 20:44:38] 
[2025-11-27 20:44:38] 2025-11-28 01:44:05,563 | INFO     | ***************************************
[2025-11-27 20:44:38] 2025-11-28 01:44:06,065 | INFO     | executing command: df -mP /tmp/boinchome/slots/9
[2025-11-27 20:44:38] 2025-11-28 01:44:06,085 | INFO     | sufficient remaining disk space (123576778752 B)
[2025-11-27 20:44:38] 2025-11-28 01:44:06,085 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 20:44:38] 2025-11-28 01:44:06,085 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 20:44:38] 2025-11-28 01:44:06,085 | INFO     | update_server=False
[2025-11-27 20:44:38] 2025-11-28 01:44:06,085 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 20:44:38] 2025-11-28 01:44:06,086 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 20:44:38] 2025-11-28 01:44:06,086 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:44:38] 2025-11-28 01:44:06,086 | INFO     | aborting loop
[2025-11-27 20:44:38] 2025-11-28 01:44:06,209 | INFO     | all payload control threads have been joined
[2025-11-27 20:44:38] 2025-11-28 01:44:06,229 | INFO     | all data control threads have been joined
[2025-11-27 20:44:38] 2025-11-28 01:44:06,939 | INFO     | all job control threads have been joined
[2025-11-27 20:44:38] 2025-11-28 01:44:06,976 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 20:44:38] 2025-11-28 01:44:07,092 | INFO     | [job] retrieve thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:07,092 | INFO     | [job] job monitor thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:07,114 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:07,215 | INFO     | [payload] control thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:07,235 | INFO     | [data] control thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:07,363 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:07,944 | INFO     | [job] control thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:08,000 | INFO     | [job] validate thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:08,004 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:08,029 | INFO     | [payload] failed_post thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:08,174 | INFO     | [data] copytool_in thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:08,394 | INFO     | [payload] validate_post thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:08,932 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 20:44:38] 2025-11-28 01:44:08,983 | INFO     | [data] copytool_out thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:09,938 | INFO     | [job] queue monitor thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:10,099 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:16,661 | INFO     | job.realtimelogging is not enabled
[2025-11-27 20:44:38] 2025-11-28 01:44:17,666 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 20:44:38] 2025-11-28 01:44:20,287 | INFO     | [monitor] cgroup control has ended
[2025-11-27 20:44:38] 2025-11-28 01:44:21,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140590251108160)>', '<ExcThread(monitor, started 140589764957952)>']
[2025-11-27 20:44:38] 2025-11-28 01:44:26,417 | INFO     | all workflow threads have been joined
[2025-11-27 20:44:38] 2025-11-28 01:44:26,420 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 20:44:38] 2025-11-28 01:44:26,421 | INFO     | traces error code: 0
[2025-11-27 20:44:38] 2025-11-28 01:44:26,421 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 20:44:38] 2025-11-28 01:44:37,423 | INFO     | PID=1613933 has CPU usage=7.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 20:44:38] 2025-11-28 01:44:37,424 | INFO     | .. there are 31 such processes running
[2025-11-27 20:44:38] 2025-11-28 01:44:37,424 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 20:44:38] 2025-11-28 01:44:37,424 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 20:44:38] 2025-11-28 01:44:37,424 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 20:44:38] 2025-11-28 01:44:37,424 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 20:44:38] 2025-11-28 01:44:37,424 | INFO     | [monitor] control thread has ended
[2025-11-27 20:44:38] 2025-11-28 01:44:37,772 [wrapper] ==== pilot stdout END ====
[2025-11-27 20:44:38] 2025-11-28 01:44:37,776 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 20:44:38] 2025-11-28 01:44:37,778 [wrapper] pilotpid: 1613933
[2025-11-27 20:44:38] 2025-11-28 01:44:37,781 [wrapper] Pilot exit status: 0
[2025-11-27 20:44:38] 2025-11-28 01:44:37,829 [wrapper] pandaids: 6896044240 6896044240
[2025-11-27 20:44:38] 2025-11-28 01:44:38,065 [wrapper] cleanup supervisor_pilot 1389640 1613934
[2025-11-27 20:44:38] 2025-11-28 01:44:38,068 [wrapper] Test setup, not cleaning
[2025-11-27 20:44:38] 2025-11-28 01:44:38,072 [wrapper] apfmon messages muted
[2025-11-27 20:44:38] 2025-11-28 01:44:38,075 [wrapper] ==== wrapper stdout END ====
[2025-11-27 20:44:38] 2025-11-28 01:44:38,079 [wrapper] ==== wrapper stderr END ====
[2025-11-27 20:44:38]  *** Error codes and diagnostics ***
[2025-11-27 20:44:38]     "exeErrorCode": 0,
[2025-11-27 20:44:38]     "exeErrorDiag": "",
[2025-11-27 20:44:38]     "pilotErrorCode": 0,
[2025-11-27 20:44:38]     "pilotErrorDiag": "",
[2025-11-27 20:44:38]  *** Listing of results directory ***
[2025-11-27 20:44:38] total 1729164
[2025-11-27 20:44:38] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 13:01 pilot3.tar.gz
[2025-11-27 20:44:38] -rwx------. 1 boincer umatlas     36292 Nov 24 13:03 runpilot2-wrapper.sh
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 13:03 queuedata.json
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 20:44:38] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-27 20:44:38] -rw-r--r--. 3 boincer umatlas 409292794 Nov 26 00:01 EVNT.47483658._003025.pool.root.1
[2025-11-27 20:44:38] -rw-r--r--. 3 boincer umatlas 409292794 Nov 26 00:01 ATLAS.root_0
[2025-11-27 20:44:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 20:44:38] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-27 20:44:38] -rw-r--r--. 2 boincer umatlas    590088 Nov 26 00:01 input.tar.gz
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas      2783 Nov 27 00:01 pandaJob.out
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas        57 Nov 27 00:01 setup.sh.local
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas    991570 Nov 27 00:02 agis_schedconf.cvmfs.json
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas       533 Nov 27 20:34 boinc_task_state.xml
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas      6948 Nov 27 20:37 init_data.xml
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas 924085907 Nov 27 20:43 HITS.47556173._000072.pool.root.1
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas        97 Nov 27 20:43 pilot_heartbeat.json
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas      1064 Nov 27 20:43 memory_monitor_summary.json
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas   1516240 Nov 27 20:43 agis_ddmendpoints.agis.ALL.json
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas   2733417 Nov 27 20:43 log.47556173._000072.job.log.tgz.1
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas      8598 Nov 27 20:44 heartbeat.json
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 20:44 boinc_mmap_file
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas        29 Nov 27 20:44 wrapper_checkpoint.txt
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas       823 Nov 27 20:44 pilotlog.txt
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas   9304968 Nov 27 20:44 log.47556173._000072.job.log.1
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas       353 Nov 27 20:44 output.list
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas       620 Nov 27 20:44 runtime_log
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas  12062720 Nov 27 20:44 result.tar.gz
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas      9425 Nov 27 20:44 runtime_log.err
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas       788 Nov 27 20:44 nYNLDmO5ph8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmvpLKDmmnB8fm.diag
[2025-11-27 20:44:38] -rw-r--r--. 1 boincer umatlas     23421 Nov 27 20:44 stderr.txt
[2025-11-27 20:44:38] HITS file was successfully produced:
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas 924085907 Nov 27 20:43 shared/HITS.pool.root.1
[2025-11-27 20:44:38]  *** Contents of shared directory: ***
[2025-11-27 20:44:38] total 1314508
[2025-11-27 20:44:38] -rw-r--r--. 3 boincer umatlas 409292794 Nov 26 00:01 ATLAS.root_0
[2025-11-27 20:44:38] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-27 20:44:38] -rw-r--r--. 2 boincer umatlas    590088 Nov 26 00:01 input.tar.gz
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas 924085907 Nov 27 20:43 HITS.pool.root.1
[2025-11-27 20:44:38] -rw-------. 1 boincer umatlas  12062720 Nov 27 20:44 result.tar.gz
20:44:39 (1602592): run_atlas exited; CPU time 214554.320995
20:44:39 (1602592): called boinc_finish(0)

</stderr_txt>
]]>

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