Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:12 (1632732): wrapper (7.7.26015): starting
00:01:12 (1632732): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:12] Arguments: --nthreads 9
[2025-11-26 00:01:12] Threads: 9
[2025-11-26 00:01:12] Checking for CVMFS
[2025-11-26 00:01:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:16] 2.13.2.0 6111 33990 283020 153309 1 491 40207709 40960001 10398 16776704 0 34682879 99.729 22734102 37840 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:01:16] CVMFS is ok
[2025-11-26 00:01:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:16] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:16] Checking for apptainer binary...
[2025-11-26 00:01:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:16] Running /usr/bin/apptainer --version
[2025-11-26 00:01:16] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:16] c-210-35-3.aglt2.org
[2025-11-26 00:01:16] apptainer works
[2025-11-26 00:01:16] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:16] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:17] Starting ATLAS job with PandaID=6891071871
[2025-11-26 00:01:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:50:09]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:50:09] 2025-11-27 19:49:16,050 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:50:09] 2025-11-27 19:49:16,641 | INFO     | time since job start (139599s) is within the limit (172800.0s)
[2025-11-27 14:50:09] 2025-11-27 19:49:18,562 | INFO     | monitor loop #8064: job 0:6891071871 is in state 'finished'
[2025-11-27 14:50:09] 2025-11-27 19:49:18,562 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:50:09] 2025-11-27 19:49:18,672 | INFO     | time since job start (139601s) is within the limit (172800.0s)
[2025-11-27 14:50:09] 2025-11-27 19:49:20,679 | INFO     | time since job start (139603s) is within the limit (172800.0s)
[2025-11-27 14:50:09] 2025-11-27 19:49:21,069 | INFO     | monitor loop #8065: job 0:6891071871 is in state 'finished'
[2025-11-27 14:50:09] 2025-11-27 19:49:21,069 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:50:09] 2025-11-27 19:49:22,687 | INFO     | time since job start (139605s) is within the limit (172800.0s)
[2025-11-27 14:50:09] 2025-11-27 19:49:23,574 | INFO     | monitor loop #8066: job 0:6891071871 is in state 'finished'
[2025-11-27 14:50:09] 2025-11-27 19:49:23,574 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:50:09] 2025-11-27 19:49:24,695 | INFO     | time since job start (139607s) is within the limit (172800.0s)
[2025-11-27 14:50:09] 2025-11-27 19:49:26,100 | INFO     | monitor loop #8067: job 0:6891071871 is in state 'finished'
[2025-11-27 14:50:09] 2025-11-27 19:49:26,100 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:50:09] 2025-11-27 19:49:26,615 | INFO     | PID=1648773 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:50:09] 2025-11-27 19:49:26,616 | INFO     | .. there are 12 such processes running
[2025-11-27 14:50:09] 2025-11-27 19:49:27,367 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 14:50:09] 2025-11-27 19:49:27,376 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2715.694500000001
[2025-11-27 14:50:09] 2025-11-27 19:49:27,403 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6891071871/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:50:09] 2025-11-27 19:49:27,404 | INFO     | extracted standard info from prmon json
[2025-11-27 14:50:09] 2025-11-27 19:49:27,404 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:50:09] 2025-11-27 19:49:27,404 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:50:09] 2025-11-27 19:49:27,473 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:50:09] 2025-11-27 19:49:27,476 | INFO     | sum of square deviations: 3699357091591.5967
[2025-11-27 14:50:09] 2025-11-27 19:49:27,627 | INFO     | time since job start (139610s) is within the limit (172800.0s)
[2025-11-27 14:50:09] 2025-11-27 19:49:27,638 | INFO     | sum of deviations: 14829523072045.016
[2025-11-27 14:50:09] 2025-11-27 19:49:27,638 | INFO     | mean x: 1764203205.8
[2025-11-27 14:50:09] 2025-11-27 19:49:27,638 | INFO     | mean y: 3068814.4223194746
[2025-11-27 14:50:09] 2025-11-27 19:49:27,638 | INFO     | intersect: -7069049798.742143
[2025-11-27 14:50:09] 2025-11-27 19:49:27,645 | INFO     | chi2: 29.149381621362338
[2025-11-27 14:50:09] 2025-11-27 19:49:27,652 | INFO     | sum of square deviations: 3675128874631.662
[2025-11-27 14:50:09] 2025-11-27 19:49:27,788 | INFO     | sum of deviations: 15636375807812.902
[2025-11-27 14:50:09] 2025-11-27 19:49:27,788 | INFO     | mean x: 1764203053.3122807
[2025-11-27 14:50:09] 2025-11-27 19:49:27,789 | INFO     | mean y: 3073892.511403509
[2025-11-27 14:50:09] 2025-11-27 19:49:27,789 | INFO     | intersect: -7502987223.684574
[2025-11-27 14:50:09] 2025-11-27 19:49:27,791 | INFO     | chi2: 25.979124530903402
[2025-11-27 14:50:09] 2025-11-27 19:49:27,792 | INFO     | current chi2=25.979124530903402 (change=10.875898266519622 %)
[2025-11-27 14:50:09] 2025-11-27 19:49:27,792 | INFO     | right removable region: 2279
[2025-11-27 14:50:09] 2025-11-27 19:49:27,794 | INFO     | sum of square deviations: 3675120929798.028
[2025-11-27 14:50:09] 2025-11-27 19:49:27,932 | INFO     | sum of deviations: 13815308313404.158
[2025-11-27 14:50:09] 2025-11-27 19:49:27,932 | INFO     | mean x: 1764203358.3127193
[2025-11-27 14:50:09] 2025-11-27 19:49:27,932 | INFO     | mean y: 3075196.2872807016
[2025-11-27 14:50:09] 2025-11-27 19:49:27,932 | INFO     | intersect: -6628819042.897035
[2025-11-27 14:50:09] 2025-11-27 19:49:27,935 | INFO     | chi2: 24.685693073282103
[2025-11-27 14:50:09] 2025-11-27 19:49:27,935 | INFO     | current chi2=24.685693073282103 (change=15.313150056016928 %)
[2025-11-27 14:50:09] 2025-11-27 19:49:27,935 | INFO     | left removable region: 10
[2025-11-27 14:50:09] 2025-11-27 19:49:27,938 | INFO     | sum of square deviations: 3622183899370.245
[2025-11-27 14:50:09] 2025-11-27 19:49:28,030 | INFO     | sum of deviations: 13879344986957.676
[2025-11-27 14:50:09] 2025-11-27 19:49:28,031 | INFO     | mean x: 1764203327.8404584
[2025-11-27 14:50:09] 2025-11-27 19:49:28,031 | INFO     | mean y: 3087359.0321727633
[2025-11-27 14:50:09] 2025-11-27 19:49:28,031 | INFO     | intersect: -6756919116.203295
[2025-11-27 14:50:09] 2025-11-27 19:49:28,033 | INFO     | chi2: 17.05206078486482
[2025-11-27 14:50:09] 2025-11-27 19:49:28,034 | INFO     | current memory leak: 3.83 B/s (using 2269 data points, chi2=17.05)
[2025-11-27 14:50:09] 2025-11-27 19:49:28,036 | INFO     | could have reported an average CPU frequency of 2749 MHz (79 samples)
[2025-11-27 14:50:09] 2025-11-27 19:49:28,036 | INFO     | ..............................
[2025-11-27 14:50:09] 2025-11-27 19:49:28,036 | INFO     | . Timing measurements:
[2025-11-27 14:50:09] 2025-11-27 19:49:28,036 | INFO     | . get job = 0 s
[2025-11-27 14:50:09] 2025-11-27 19:49:28,036 | INFO     | . initial setup = 7 s
[2025-11-27 14:50:09] 2025-11-27 19:49:28,036 | INFO     | . payload setup = 58 s
[2025-11-27 14:50:09] 2025-11-27 19:49:28,036 | INFO     | . stage-in = 0 s
[2025-11-27 14:50:09] 2025-11-27 19:49:28,036 | INFO     | . payload execution = 139417 s
[2025-11-27 14:50:09] 2025-11-27 19:49:28,036 | INFO     | . stage-out = 12 s
[2025-11-27 14:50:09] 2025-11-27 19:49:28,036 | INFO     | . log creation = 7 s
[2025-11-27 14:50:09] 2025-11-27 19:49:28,036 | INFO     | ..............................
[2025-11-27 14:50:09] 2025-11-27 19:49:28,251 | INFO     | 
[2025-11-27 14:50:09] 2025-11-27 19:49:28,251 | INFO     | job summary report
[2025-11-27 14:50:09] 2025-11-27 19:49:28,251 | INFO     | --------------------------------------------------
[2025-11-27 14:50:09] 2025-11-27 19:49:28,251 | INFO     | PanDA job id: 6891071871
[2025-11-27 14:50:09] 2025-11-27 19:49:28,251 | INFO     | task id: 47483661
[2025-11-27 14:50:09] 2025-11-27 19:49:28,251 | INFO     | errors: (none)
[2025-11-27 14:50:09] 2025-11-27 19:49:28,251 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:50:09] 2025-11-27 19:49:28,251 | INFO     | pilot state: finished 
[2025-11-27 14:50:09] 2025-11-27 19:49:28,251 | INFO     | transexitcode: 0
[2025-11-27 14:50:09] 2025-11-27 19:49:28,251 | INFO     | exeerrorcode: 0
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | exeerrordiag: 
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | exitcode: 0
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | exitmsg: OK
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | cpuconsumptiontime: 249290 s
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | nevents: 1000
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | neventsw: 0
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | pid: 1669410
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | pgrp: 1669410
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | corecount: 9
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | event service: False
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | sizes: {0: 2283476, 1: 2284161, 2: 2284332, 3: 2284388, 14: 2284388, 25: 2284416, 36: 2284572, 40: 2284862, 48: 2284890, 139480: 2373711, 139481: 2373710, 139494: 
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | --------------------------------------------------
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | 
[2025-11-27 14:50:09] 2025-11-27 19:49:28,252 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-27 14:50:09] 2025-11-27 19:49:28,285 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,286 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,286 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,286 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,286 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,286 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,286 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,286 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,286 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,287 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,287 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,287 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,287 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,287 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,287 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,287 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,287 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,288 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:50:09] 2025-11-27 19:49:28,288 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,288 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:50:09] 2025-11-27 19:49:28,288 | INFO     | job 6891071871 has completed (purged errors)
[2025-11-27 14:50:09] 2025-11-27 19:49:28,288 | INFO     | overall cleanup function is called
[2025-11-27 14:50:09] 2025-11-27 19:49:29,320 | INFO     | --- collectZombieJob: --- 10, [1669410]
[2025-11-27 14:50:09] 2025-11-27 19:49:29,320 | INFO     | zombie collector waiting for pid 1669410
[2025-11-27 14:50:09] 2025-11-27 19:49:29,320 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:50:09] 2025-11-27 19:49:29,320 | INFO     | collected zombie processes
[2025-11-27 14:50:09] 2025-11-27 19:49:29,320 | INFO     | will attempt to kill all subprocesses of pid=1669410
[2025-11-27 14:50:09] 2025-11-27 19:49:29,695 | INFO     | process IDs to be killed: [1669410] (in reverse order)
[2025-11-27 14:50:09] 2025-11-27 19:49:30,251 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:50:09] 2025-11-27 19:49:30,276 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:50:09] 2025-11-27 19:49:30,367 | INFO     | did not find any defunct processes belonging to 1669410
[2025-11-27 14:50:09] 2025-11-27 19:49:30,413 | INFO     | did not find any defunct processes belonging to 1669410
[2025-11-27 14:50:09] 2025-11-27 19:49:30,418 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:50:09] 2025-11-27 19:49:30,418 | INFO     | ready for new job
[2025-11-27 14:50:09] 2025-11-27 19:49:30,418 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:50:09] 2025-11-27 19:49:30,436 | INFO     | ***************************************
[2025-11-27 14:50:09] 2025-11-27 19:49:30,436 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:50:09] 2025-11-27 19:49:30,436 | INFO     | ***************************************
[2025-11-27 14:50:09] 2025-11-27 19:49:30,436 | INFO     | 
[2025-11-27 14:50:09] 2025-11-27 19:49:30,444 | INFO     | architecture information:
[2025-11-27 14:50:09] 2025-11-27 19:49:30,446 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:50:09] 2025-11-27 19:49:30,493 | INFO     | cat /etc/os-release:
[2025-11-27 14:50:09] NAME="CentOS Linux"
[2025-11-27 14:50:09] VERSION="7 (Core)"
[2025-11-27 14:50:09] ID="centos"
[2025-11-27 14:50:09] ID_LIKE="rhel fedora"
[2025-11-27 14:50:09] VERSION_ID="7"
[2025-11-27 14:50:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:50:09] ANSI_COLOR="0;31"
[2025-11-27 14:50:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:50:09] HOME_URL="https://www.centos.org/"
[2025-11-27 14:50:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:50:09] 
[2025-11-27 14:50:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:50:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:50:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:50:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:50:09] 
[2025-11-27 14:50:09] 2025-11-27 19:49:30,494 | INFO     | ***************************************
[2025-11-27 14:50:09] 2025-11-27 19:49:30,996 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-27 14:50:09] 2025-11-27 19:49:31,149 | INFO     | sufficient remaining disk space (67837624320 B)
[2025-11-27 14:50:09] 2025-11-27 19:49:31,154 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:50:09] 2025-11-27 19:49:31,154 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:50:09] 2025-11-27 19:49:31,154 | INFO     | update_server=False
[2025-11-27 14:50:09] 2025-11-27 19:49:31,154 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:50:09] 2025-11-27 19:49:31,155 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:50:09] 2025-11-27 19:49:31,206 | INFO     | all job control threads have been joined
[2025-11-27 14:50:09] 2025-11-27 19:49:32,060 | INFO     | all payload control threads have been joined
[2025-11-27 14:50:09] 2025-11-27 19:49:32,135 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:50:09] 2025-11-27 19:49:32,135 | INFO     | aborting loop
[2025-11-27 14:50:09] 2025-11-27 19:49:32,160 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:32,224 | INFO     | [job] control thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:32,247 | INFO     | all data control threads have been joined
[2025-11-27 14:50:09] 2025-11-27 19:49:32,388 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:32,544 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:32,544 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:32,620 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:32,643 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:32,861 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:33,066 | INFO     | [payload] control thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:33,141 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:33,161 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:33,253 | INFO     | [data] control thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:33,267 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:33,286 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:50:09] 2025-11-27 19:49:33,670 | INFO     | [job] validate thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:33,975 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:50:09] 2025-11-27 19:49:34,292 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:49:38,010 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:50:09] 2025-11-27 19:50:00,794 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:50:09] 2025-11-27 19:50:01,800 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139986169120576)>', '<ExcThread(monitor, started 139985449637632)>']
[2025-11-27 14:50:09] 2025-11-27 19:50:02,919 | INFO     | PID=1648773 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:50:09] 2025-11-27 19:50:02,919 | INFO     | .. there are 12 such processes running
[2025-11-27 14:50:09] 2025-11-27 19:50:02,926 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:50:09] 2025-11-27 19:50:02,926 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:50:09] 2025-11-27 19:50:02,926 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:50:09] 2025-11-27 19:50:02,930 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:50:09] 2025-11-27 19:50:02,930 | INFO     | [monitor] control thread has ended
[2025-11-27 14:50:09] 2025-11-27 19:50:06,826 | INFO     | all workflow threads have been joined
[2025-11-27 14:50:09] 2025-11-27 19:50:06,826 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:50:09] 2025-11-27 19:50:06,827 | INFO     | traces error code: 0
[2025-11-27 14:50:09] 2025-11-27 19:50:06,827 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:50:09] 2025-11-27 19:50:08,379 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:50:09] 2025-11-27 19:50:08,397 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:50:09] 2025-11-27 19:50:08,414 [wrapper] pilotpid: 1648773
[2025-11-27 14:50:09] 2025-11-27 19:50:08,453 [wrapper] Pilot exit status: 0
[2025-11-27 14:50:09] 2025-11-27 19:50:08,587 [wrapper] pandaids: 6891071871
[2025-11-27 14:50:09] 2025-11-27 19:50:08,785 [wrapper] cleanup supervisor_pilot 2161894 1648774
[2025-11-27 14:50:09] 2025-11-27 19:50:08,789 [wrapper] Test setup, not cleaning
[2025-11-27 14:50:09] 2025-11-27 19:50:08,809 [wrapper] apfmon messages muted
[2025-11-27 14:50:09] 2025-11-27 19:50:08,823 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:50:09] 2025-11-27 19:50:08,827 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:50:09]  *** Error codes and diagnostics ***
[2025-11-27 14:50:09]     "exeErrorCode": 0,
[2025-11-27 14:50:09]     "exeErrorDiag": "",
[2025-11-27 14:50:09]     "pilotErrorCode": 0,
[2025-11-27 14:50:09]     "pilotErrorDiag": "",
[2025-11-27 14:50:09]  *** Listing of results directory ***
[2025-11-27 14:50:09] total 1334448
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 00:55 pilot3.tar.gz
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 00:59 queuedata.json
[2025-11-27 14:50:09] -rwx------. 1 boincer umatlas     36292 Nov 18 01:00 runpilot2-wrapper.sh
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:50:09] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-27 14:50:09] -rw-r--r--. 2 boincer umatlas 410273248 Nov 26 00:01 EVNT.47483658._000167.pool.root.1
[2025-11-27 14:50:09] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:01 input.tar.gz
[2025-11-27 14:50:09] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:01 start_atlas.sh
[2025-11-27 14:50:09] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas      2773 Nov 26 00:01 pandaJob.out
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-27 14:50:09] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:03 boinc_task_state.xml
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 14:46 init_data.xml
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas 911336101 Nov 27 14:47 HITS.47483661._001668.pool.root.1
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas      1072 Nov 27 14:48 memory_monitor_summary.json
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:48 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas   3183084 Nov 27 14:48 log.47483661._001668.job.log.tgz.1
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas      8637 Nov 27 14:49 heartbeat.json
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas        95 Nov 27 14:50 pilot_heartbeat.json
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:50 wrapper_checkpoint.txt
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:50 boinc_mmap_file
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas      4824 Nov 27 14:50 pilotlog.txt
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas  17288667 Nov 27 14:50 log.47483661._001668.job.log.1
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas       353 Nov 27 14:50 output.list
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:50 runtime_log
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas  20490240 Nov 27 14:50 result.tar.gz
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas       665 Nov 27 14:50 ZLcKDmswTf8nsSi4ap6QjLDmwznN0nGgGQJmUXzaDmEKKODm7pizLm.diag
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas      8715 Nov 27 14:50 runtime_log.err
[2025-11-27 14:50:09] -rw-r--r--. 1 boincer umatlas     21906 Nov 27 14:50 stderr.txt
[2025-11-27 14:50:09] HITS file was successfully produced:
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas 911336101 Nov 27 14:47 shared/HITS.pool.root.1
[2025-11-27 14:50:09]  *** Contents of shared directory: ***
[2025-11-27 14:50:09] total 1311256
[2025-11-27 14:50:09] -rw-r--r--. 2 boincer umatlas 410273248 Nov 26 00:01 ATLAS.root_0
[2025-11-27 14:50:09] -rw-r--r--. 2 boincer umatlas    590102 Nov 26 00:01 input.tar.gz
[2025-11-27 14:50:09] -rw-r--r--. 2 boincer umatlas     15120 Nov 26 00:01 start_atlas.sh
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas 911336101 Nov 27 14:47 HITS.pool.root.1
[2025-11-27 14:50:09] -rw-------. 1 boincer umatlas  20490240 Nov 27 14:50 result.tar.gz
14:50:10 (1632732): run_atlas exited; CPU time 251777.975705
14:50:10 (1632732): called boinc_finish(0)

</stderr_txt>
]]>

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