Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:59 (1630667): wrapper (7.7.26015): starting
00:00:59 (1630667): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:00:59] Arguments: --nthreads 9
[2025-11-26 00:00:59] Threads: 9
[2025-11-26 00:00:59] Checking for CVMFS
[2025-11-26 00:01:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:02] 2.13.2.0 6111 33990 283020 153309 1 491 40207589 40960001 10351 16776704 0 34679062 99.729 22734102 37840 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-26 00:01:02] CVMFS is ok
[2025-11-26 00:01:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:02] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:02] Checking for apptainer binary...
[2025-11-26 00:01:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:02] Running /usr/bin/apptainer --version
[2025-11-26 00:01:02] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:04] c-210-35-3.aglt2.org
[2025-11-26 00:01:04] apptainer works
[2025-11-26 00:01:04] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:04] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:04] Starting ATLAS job with PandaID=6896045937
[2025-11-26 00:01:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 14:57:04]  *** The last 200 lines of the pilot log: ***
[2025-11-27 14:57:04] 2025-11-27 19:55:45,297 | INFO     | .. there are 11 such processes running
[2025-11-27 14:57:04] 2025-11-27 19:55:45,609 | INFO     | monitor loop #8084: job 0:6896045937 is in state 'finished'
[2025-11-27 14:57:04] 2025-11-27 19:55:45,609 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:57:04] 2025-11-27 19:55:46,305 | INFO     | time since job start (139998s) is within the limit (172800.0s)
[2025-11-27 14:57:04] 2025-11-27 19:55:48,114 | INFO     | monitor loop #8085: job 0:6896045937 is in state 'finished'
[2025-11-27 14:57:04] 2025-11-27 19:55:48,114 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:57:04] 2025-11-27 19:55:48,312 | INFO     | time since job start (140000s) is within the limit (172800.0s)
[2025-11-27 14:57:04] 2025-11-27 19:55:50,319 | INFO     | time since job start (140002s) is within the limit (172800.0s)
[2025-11-27 14:57:04] 2025-11-27 19:55:50,621 | INFO     | monitor loop #8086: job 0:6896045937 is in state 'finished'
[2025-11-27 14:57:04] 2025-11-27 19:55:50,621 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:57:04] 2025-11-27 19:55:52,327 | INFO     | time since job start (140004s) is within the limit (172800.0s)
[2025-11-27 14:57:04] 2025-11-27 19:55:53,126 | INFO     | monitor loop #8087: job 0:6896045937 is in state 'finished'
[2025-11-27 14:57:04] 2025-11-27 19:55:53,126 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:57:04] 2025-11-27 19:55:54,334 | INFO     | time since job start (140006s) is within the limit (172800.0s)
[2025-11-27 14:57:04] 2025-11-27 19:55:55,633 | INFO     | monitor loop #8088: job 0:6896045937 is in state 'finished'
[2025-11-27 14:57:04] 2025-11-27 19:55:55,633 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 14:57:04] 2025-11-27 19:55:56,341 | INFO     | time since job start (140008s) is within the limit (172800.0s)
[2025-11-27 14:57:04] 2025-11-27 19:55:56,383 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 14:57:04] 2025-11-27 19:55:56,391 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2750.0016785714283
[2025-11-27 14:57:04] 2025-11-27 19:55:56,413 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6896045937/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 14:57:04] 2025-11-27 19:55:56,413 | INFO     | extracted standard info from prmon json
[2025-11-27 14:57:04] 2025-11-27 19:55:56,413 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 14:57:04] 2025-11-27 19:55:56,414 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 14:57:04] 2025-11-27 19:55:56,505 | INFO     | fitting pss+swap vs Time
[2025-11-27 14:57:04] 2025-11-27 19:55:56,508 | INFO     | sum of square deviations: 3733219052446.636
[2025-11-27 14:57:04] 2025-11-27 19:55:56,617 | INFO     | sum of deviations: 19061833579435.69
[2025-11-27 14:57:04] 2025-11-27 19:55:56,618 | INFO     | mean x: 1764203424.8459861
[2025-11-27 14:57:04] 2025-11-27 19:55:56,618 | INFO     | mean y: 3039282.1692844676
[2025-11-27 14:57:04] 2025-11-27 19:55:56,618 | INFO     | intersect: -9004991484.909678
[2025-11-27 14:57:04] 2025-11-27 19:55:56,620 | INFO     | chi2: 28.349870713650645
[2025-11-27 14:57:04] 2025-11-27 19:55:56,623 | INFO     | sum of square deviations: 3708842510404.8354
[2025-11-27 14:57:04] 2025-11-27 19:55:56,709 | INFO     | sum of deviations: 19881992354912.54
[2025-11-27 14:57:04] 2025-11-27 19:55:56,710 | INFO     | mean x: 1764203272.3598602
[2025-11-27 14:57:04] 2025-11-27 19:55:56,710 | INFO     | mean y: 3044412.156099694
[2025-11-27 14:57:04] 2025-11-27 19:55:56,710 | INFO     | intersect: -9454320217.150242
[2025-11-27 14:57:04] 2025-11-27 19:55:56,711 | INFO     | chi2: 25.080485905585647
[2025-11-27 14:57:04] 2025-11-27 19:55:56,711 | INFO     | current chi2=25.080485905585647 (change=11.532274136582812 %)
[2025-11-27 14:57:04] 2025-11-27 19:55:56,711 | INFO     | right removable region: 2286
[2025-11-27 14:57:04] 2025-11-27 19:55:56,713 | INFO     | sum of square deviations: 3708833637954.8374
[2025-11-27 14:57:04] 2025-11-27 19:55:56,873 | INFO     | sum of deviations: 18055666049771.938
[2025-11-27 14:57:04] 2025-11-27 19:55:56,874 | INFO     | mean x: 1764203577.3598602
[2025-11-27 14:57:04] 2025-11-27 19:55:56,874 | INFO     | mean y: 3045574.6878006123
[2025-11-27 14:57:04] 2025-11-27 19:55:56,874 | INFO     | intersect: -8585603511.817953
[2025-11-27 14:57:04] 2025-11-27 19:55:56,876 | INFO     | chi2: 23.827606720329925
[2025-11-27 14:57:04] 2025-11-27 19:55:56,877 | INFO     | current chi2=23.827606720329925 (change=15.951621222537785 %)
[2025-11-27 14:57:04] 2025-11-27 19:55:56,877 | INFO     | left removable region: 10
[2025-11-27 14:57:04] 2025-11-27 19:55:56,879 | INFO     | sum of square deviations: 3655570482739.3237
[2025-11-27 14:57:04] 2025-11-27 19:55:57,013 | INFO     | sum of deviations: 18123121268686.605
[2025-11-27 14:57:04] 2025-11-27 19:55:57,013 | INFO     | mean x: 1764203546.8897188
[2025-11-27 14:57:04] 2025-11-27 19:55:57,013 | INFO     | mean y: 3057533.703427065
[2025-11-27 14:57:04] 2025-11-27 19:55:57,014 | INFO     | intersect: -8743285882.159353
[2025-11-27 14:57:04] 2025-11-27 19:55:57,020 | INFO     | chi2: 16.259648683982153
[2025-11-27 14:57:04] 2025-11-27 19:55:57,021 | INFO     | current memory leak: 4.96 B/s (using 2276 data points, chi2=16.26)
[2025-11-27 14:57:04] 2025-11-27 19:55:57,023 | INFO     | could have reported an average CPU frequency of 2756 MHz (79 samples)
[2025-11-27 14:57:04] 2025-11-27 19:55:57,023 | INFO     | ..............................
[2025-11-27 14:57:04] 2025-11-27 19:55:57,023 | INFO     | . Timing measurements:
[2025-11-27 14:57:04] 2025-11-27 19:55:57,023 | INFO     | . get job = 0 s
[2025-11-27 14:57:04] 2025-11-27 19:55:57,023 | INFO     | . initial setup = 8 s
[2025-11-27 14:57:04] 2025-11-27 19:55:57,023 | INFO     | . payload setup = 65 s
[2025-11-27 14:57:04] 2025-11-27 19:55:57,024 | INFO     | . stage-in = 0 s
[2025-11-27 14:57:04] 2025-11-27 19:55:57,024 | INFO     | . payload execution = 139814 s
[2025-11-27 14:57:04] 2025-11-27 19:55:57,024 | INFO     | . stage-out = 8 s
[2025-11-27 14:57:04] 2025-11-27 19:55:57,028 | INFO     | . log creation = 1 s
[2025-11-27 14:57:04] 2025-11-27 19:55:57,028 | INFO     | ..............................
[2025-11-27 14:57:04] 2025-11-27 19:55:57,688 | INFO     | 
[2025-11-27 14:57:04] 2025-11-27 19:55:57,688 | INFO     | job summary report
[2025-11-27 14:57:04] 2025-11-27 19:55:57,688 | INFO     | --------------------------------------------------
[2025-11-27 14:57:04] 2025-11-27 19:55:57,689 | INFO     | PanDA job id: 6896045937
[2025-11-27 14:57:04] 2025-11-27 19:55:57,689 | INFO     | task id: 47556173
[2025-11-27 14:57:04] 2025-11-27 19:55:57,689 | INFO     | errors: (none)
[2025-11-27 14:57:04] 2025-11-27 19:55:57,689 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 14:57:04] 2025-11-27 19:55:57,689 | INFO     | pilot state: finished 
[2025-11-27 14:57:04] 2025-11-27 19:55:57,689 | INFO     | transexitcode: 0
[2025-11-27 14:57:04] 2025-11-27 19:55:57,689 | INFO     | exeerrorcode: 0
[2025-11-27 14:57:04] 2025-11-27 19:55:57,689 | INFO     | exeerrordiag: 
[2025-11-27 14:57:04] 2025-11-27 19:55:57,689 | INFO     | exitcode: 0
[2025-11-27 14:57:04] 2025-11-27 19:55:57,689 | INFO     | exitmsg: OK
[2025-11-27 14:57:04] 2025-11-27 19:55:57,689 | INFO     | cpuconsumptiontime: 252490 s
[2025-11-27 14:57:04] 2025-11-27 19:55:57,690 | INFO     | nevents: 1000
[2025-11-27 14:57:04] 2025-11-27 19:55:57,690 | INFO     | neventsw: 0
[2025-11-27 14:57:04] 2025-11-27 19:55:57,690 | INFO     | pid: 1670328
[2025-11-27 14:57:04] 2025-11-27 19:55:57,690 | INFO     | pgrp: 1670328
[2025-11-27 14:57:04] 2025-11-27 19:55:57,690 | INFO     | corecount: 9
[2025-11-27 14:57:04] 2025-11-27 19:55:57,690 | INFO     | event service: False
[2025-11-27 14:57:04] 2025-11-27 19:55:57,690 | INFO     | sizes: {0: 2283434, 2: 2284119, 4: 2284119, 5: 2284203, 6: 2284203, 7: 2284374, 18: 2284530, 30: 2284558, 41: 2284586, 47: 2284876, 52: 2284932, 139884: 2374098, 1
[2025-11-27 14:57:04] 2025-11-27 19:55:57,690 | INFO     | --------------------------------------------------
[2025-11-27 14:57:04] 2025-11-27 19:55:57,690 | INFO     | 
[2025-11-27 14:57:04] 2025-11-27 19:55:57,690 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-27 14:57:04] 2025-11-27 19:55:57,777 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,778 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,778 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,778 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,778 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,778 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,778 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,778 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,778 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,778 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,778 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,779 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,779 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,779 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,779 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,779 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,779 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,779 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 14:57:04] 2025-11-27 19:55:57,779 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,779 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 14:57:04] 2025-11-27 19:55:57,779 | INFO     | job 6896045937 has completed (purged errors)
[2025-11-27 14:57:04] 2025-11-27 19:55:57,780 | INFO     | overall cleanup function is called
[2025-11-27 14:57:04] 2025-11-27 19:55:58,806 | INFO     | --- collectZombieJob: --- 10, [1670328]
[2025-11-27 14:57:04] 2025-11-27 19:55:58,806 | INFO     | zombie collector waiting for pid 1670328
[2025-11-27 14:57:04] 2025-11-27 19:55:58,806 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 14:57:04] 2025-11-27 19:55:58,806 | INFO     | collected zombie processes
[2025-11-27 14:57:04] 2025-11-27 19:55:58,806 | INFO     | will attempt to kill all subprocesses of pid=1670328
[2025-11-27 14:57:04] 2025-11-27 19:55:59,271 | INFO     | process IDs to be killed: [1670328] (in reverse order)
[2025-11-27 14:57:04] 2025-11-27 19:55:59,414 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 14:57:04] 2025-11-27 19:55:59,414 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 14:57:04] 2025-11-27 19:55:59,430 | INFO     | did not find any defunct processes belonging to 1670328
[2025-11-27 14:57:04] 2025-11-27 19:55:59,451 | INFO     | did not find any defunct processes belonging to 1670328
[2025-11-27 14:57:04] 2025-11-27 19:55:59,457 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 14:57:04] 2025-11-27 19:55:59,457 | INFO     | ready for new job
[2025-11-27 14:57:04] 2025-11-27 19:55:59,457 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 14:57:04] 2025-11-27 19:55:59,466 | INFO     | ***************************************
[2025-11-27 14:57:04] 2025-11-27 19:55:59,466 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 14:57:04] 2025-11-27 19:55:59,466 | INFO     | ***************************************
[2025-11-27 14:57:04] 2025-11-27 19:55:59,466 | INFO     | 
[2025-11-27 14:57:04] 2025-11-27 19:55:59,470 | INFO     | architecture information:
[2025-11-27 14:57:04] 2025-11-27 19:55:59,470 | INFO     | executing command: cat /etc/os-release
[2025-11-27 14:57:04] 2025-11-27 19:55:59,505 | INFO     | cat /etc/os-release:
[2025-11-27 14:57:04] NAME="CentOS Linux"
[2025-11-27 14:57:04] VERSION="7 (Core)"
[2025-11-27 14:57:04] ID="centos"
[2025-11-27 14:57:04] ID_LIKE="rhel fedora"
[2025-11-27 14:57:04] VERSION_ID="7"
[2025-11-27 14:57:04] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 14:57:04] ANSI_COLOR="0;31"
[2025-11-27 14:57:04] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 14:57:04] HOME_URL="https://www.centos.org/"
[2025-11-27 14:57:04] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 14:57:04] 
[2025-11-27 14:57:04] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 14:57:04] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 14:57:04] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 14:57:04] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 14:57:04] 
[2025-11-27 14:57:04] 2025-11-27 19:55:59,505 | INFO     | ***************************************
[2025-11-27 14:57:04] 2025-11-27 19:56:00,009 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-27 14:57:04] 2025-11-27 19:56:00,055 | INFO     | sufficient remaining disk space (68284317696 B)
[2025-11-27 14:57:04] 2025-11-27 19:56:00,056 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 14:57:04] 2025-11-27 19:56:00,056 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 14:57:04] 2025-11-27 19:56:00,056 | INFO     | update_server=False
[2025-11-27 14:57:04] 2025-11-27 19:56:00,056 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 14:57:04] 2025-11-27 19:56:00,056 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:57:04] 2025-11-27 19:56:00,056 | INFO     | aborting loop
[2025-11-27 14:57:04] 2025-11-27 19:56:00,057 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 14:57:04] 2025-11-27 19:56:00,191 | INFO     | all job control threads have been joined
[2025-11-27 14:57:04] 2025-11-27 19:56:00,717 | INFO     | all payload control threads have been joined
[2025-11-27 14:57:04] 2025-11-27 19:56:00,900 | INFO     | all data control threads have been joined
[2025-11-27 14:57:04] 2025-11-27 19:56:01,062 | INFO     | [job] retrieve thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:01,068 | INFO     | [job] job monitor thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:01,197 | INFO     | [job] control thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:01,218 | INFO     | [payload] validate_post thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:01,441 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 14:57:04] 2025-11-27 19:56:01,610 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:01,657 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:01,673 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:01,723 | INFO     | [payload] control thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:01,906 | INFO     | [data] control thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:02,253 | INFO     | [data] copytool_in thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:02,275 | INFO     | [job] validate thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:02,275 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:02,298 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 14:57:04] 2025-11-27 19:56:02,334 | INFO     | [payload] failed_post thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:03,304 | INFO     | [job] queue monitor thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:03,460 | INFO     | [data] copytool_out thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:04,098 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 14:57:04] 2025-11-27 19:56:30,341 | INFO     | PID=1647832 has CPU usage=2.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 14:57:04] 2025-11-27 19:56:30,341 | INFO     | .. there are 11 such processes running
[2025-11-27 14:57:04] 2025-11-27 19:56:30,341 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 14:57:04] 2025-11-27 19:56:30,341 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 14:57:04] 2025-11-27 19:56:30,341 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 14:57:04] 2025-11-27 19:56:53,499 | INFO     | [monitor] cgroup control has ended
[2025-11-27 14:57:04] 2025-11-27 19:56:55,420 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139786603116352)>', '<ExcThread(monitor, started 139785649764096)>']
[2025-11-27 14:57:04] 2025-11-27 19:56:55,586 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 14:57:04] 2025-11-27 19:56:55,586 | INFO     | [monitor] control thread has ended
[2025-11-27 14:57:04] 2025-11-27 19:57:00,468 | INFO     | all workflow threads have been joined
[2025-11-27 14:57:04] 2025-11-27 19:57:00,468 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 14:57:04] 2025-11-27 19:57:00,468 | INFO     | traces error code: 0
[2025-11-27 14:57:04] 2025-11-27 19:57:00,469 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 14:57:04] 2025-11-27 19:57:02,468 [wrapper] ==== pilot stdout END ====
[2025-11-27 14:57:04] 2025-11-27 19:57:02,512 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 14:57:04] 2025-11-27 19:57:02,575 [wrapper] pilotpid: 1647832
[2025-11-27 14:57:04] 2025-11-27 19:57:02,632 [wrapper] Pilot exit status: 0
[2025-11-27 14:57:04] 2025-11-27 19:57:02,751 [wrapper] pandaids: 6896045937
[2025-11-27 14:57:04] 2025-11-27 19:57:03,422 [wrapper] cleanup supervisor_pilot 2161776 1647833
[2025-11-27 14:57:04] 2025-11-27 19:57:03,435 [wrapper] Test setup, not cleaning
[2025-11-27 14:57:04] 2025-11-27 19:57:03,478 [wrapper] apfmon messages muted
[2025-11-27 14:57:04] 2025-11-27 19:57:03,498 [wrapper] ==== wrapper stdout END ====
[2025-11-27 14:57:04] 2025-11-27 19:57:03,513 [wrapper] ==== wrapper stderr END ====
[2025-11-27 14:57:04]  *** Error codes and diagnostics ***
[2025-11-27 14:57:04]     "exeErrorCode": 0,
[2025-11-27 14:57:04]     "exeErrorDiag": "",
[2025-11-27 14:57:04]     "pilotErrorCode": 0,
[2025-11-27 14:57:04]     "pilotErrorDiag": "",
[2025-11-27 14:57:04]  *** Listing of results directory ***
[2025-11-27 14:57:04] total 1325416
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas    576529 Nov 24 14:02 pilot3.tar.gz
[2025-11-27 14:57:04] -rwx------. 1 boincer umatlas     36292 Nov 24 14:05 runpilot2-wrapper.sh
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas      5112 Nov 24 14:05 queuedata.json
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 14:57:04] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:00 run_atlas
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:00 job.xml
[2025-11-27 14:57:04] -rw-r--r--. 2 boincer umatlas 408105864 Nov 26 00:00 EVNT.47483658._003043.pool.root.1
[2025-11-27 14:57:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-27 14:57:04] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:00 shared
[2025-11-27 14:57:04] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 00:00 input.tar.gz
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:00 boinc_lockfile
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas      2784 Nov 26 00:01 pandaJob.out
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-27 14:57:04] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas       533 Nov 27 14:31 boinc_task_state.xml
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas 904106143 Nov 27 14:54 HITS.47556173._000253.pool.root.1
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas      1060 Nov 27 14:55 memory_monitor_summary.json
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas   1516240 Nov 27 14:55 agis_ddmendpoints.agis.ALL.json
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas   3202478 Nov 27 14:55 log.47556173._000253.job.log.tgz.1
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas        95 Nov 27 14:55 pilot_heartbeat.json
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas      8626 Nov 27 14:55 heartbeat.json
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas      6843 Nov 27 14:56 init_data.xml
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas      4824 Nov 27 14:57 pilotlog.txt
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas        29 Nov 27 14:57 wrapper_checkpoint.txt
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas  17343248 Nov 27 14:57 log.47556173._000253.job.log.1
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 14:57 boinc_mmap_file
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas       353 Nov 27 14:57 output.list
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas       620 Nov 27 14:57 runtime_log
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas  20561920 Nov 27 14:57 result.tar.gz
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas       665 Nov 27 14:57 UITKDmn3qh8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmzrLKDmvOnqyn.diag
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas      9354 Nov 27 14:57 runtime_log.err
[2025-11-27 14:57:04] -rw-r--r--. 1 boincer umatlas     21808 Nov 27 14:57 stderr.txt
[2025-11-27 14:57:04] HITS file was successfully produced:
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas 904106143 Nov 27 14:54 shared/HITS.pool.root.1
[2025-11-27 14:57:04]  *** Contents of shared directory: ***
[2025-11-27 14:57:04] total 1302148
[2025-11-27 14:57:04] -rw-r--r--. 2 boincer umatlas 408105864 Nov 26 00:00 ATLAS.root_0
[2025-11-27 14:57:04] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:00 start_atlas.sh
[2025-11-27 14:57:04] -rw-r--r--. 2 boincer umatlas    590095 Nov 26 00:00 input.tar.gz
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas 904106143 Nov 27 14:54 HITS.pool.root.1
[2025-11-27 14:57:04] -rw-------. 1 boincer umatlas  20561920 Nov 27 14:57 result.tar.gz
14:57:06 (1630667): run_atlas exited; CPU time 254744.501167
14:57:06 (1630667): called boinc_finish(0)

</stderr_txt>
]]>

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