Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
23:39:43 (17240): wrapper (7.7.26015): starting
23:39:43 (17240): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:39:43] Arguments: --nthreads 8
[2025-11-25 23:39:43] Threads: 8
[2025-11-25 23:39:43] Checking for CVMFS
[2025-11-25 23:39:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:39:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:39:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:39:43] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:39:43] 2.11.2.0 28705 117374 142556 153309 3 84 10350149 18432000 1035 130560 0 85932176 99.975 5004292 32059 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-25 23:39:43] CVMFS is ok
[2025-11-25 23:39:43] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:39:43] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:39:43] Further information can be found at the LHC@home message board.
[2025-11-25 23:39:43] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:39:43] Checking for apptainer binary...
[2025-11-25 23:39:43] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:39:43] Running /usr/bin/apptainer --version
[2025-11-25 23:39:43] apptainer version 1.3.2-1.el7
[2025-11-25 23:39:43] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:39:44] c-206-27.aglt2.org
[2025-11-25 23:39:44] apptainer works
[2025-11-25 23:39:44] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:39:44] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:39:44] Starting ATLAS job with PandaID=6897864975
[2025-11-25 23:39:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:22:57]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:22:57] 2025-11-27 00:22:03,640 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:22:57] 2025-11-27 00:22:03,640 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:22:57] 2025-11-27 00:22:03,657 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:22:57] 2025-11-27 00:22:03,659 | INFO     | sum of square deviations: 487773217890.2562
[2025-11-26 19:22:57] 2025-11-27 00:22:03,682 | INFO     | sum of deviations: 2286255155513.208
[2025-11-26 19:22:57] 2025-11-27 00:22:03,683 | INFO     | mean x: 1764167458.6190886
[2025-11-26 19:22:57] 2025-11-27 00:22:03,683 | INFO     | mean y: 2868547.6483233017
[2025-11-26 19:22:57] 2025-11-27 00:22:03,683 | INFO     | intersect: -8266008872.275915
[2025-11-26 19:22:57] 2025-11-27 00:22:03,684 | INFO     | chi2: 5.8764429816856
[2025-11-26 19:22:57] 2025-11-27 00:22:03,685 | INFO     | sum of square deviations: 481509310735.832
[2025-11-26 19:22:57] 2025-11-27 00:22:03,709 | INFO     | sum of deviations: 2659760327080.379
[2025-11-26 19:22:57] 2025-11-27 00:22:03,709 | INFO     | mean x: 1764167306.1217616
[2025-11-26 19:22:57] 2025-11-27 00:22:03,710 | INFO     | mean y: 2877637.0328151984
[2025-11-26 19:22:57] 2025-11-27 00:22:03,710 | INFO     | intersect: -9742026784.408829
[2025-11-26 19:22:57] 2025-11-27 00:22:03,711 | INFO     | chi2: 2.8495587146133228
[2025-11-26 19:22:57] 2025-11-27 00:22:03,711 | INFO     | current chi2=2.8495587146133228 (change=51.50878305985104 %)
[2025-11-26 19:22:57] 2025-11-27 00:22:03,712 | INFO     | sum of square deviations: 475299265056.39044
[2025-11-26 19:22:57] 2025-11-27 00:22:03,736 | INFO     | sum of deviations: 2827694841330.528
[2025-11-26 19:22:57] 2025-11-27 00:22:03,736 | INFO     | mean x: 1764167153.6244578
[2025-11-26 19:22:57] 2025-11-27 00:22:03,736 | INFO     | mean y: 2881758.4492627927
[2025-11-26 19:22:57] 2025-11-27 00:22:03,736 | INFO     | intersect: -10492666470.42669
[2025-11-26 19:22:57] 2025-11-27 00:22:03,737 | INFO     | chi2: 2.1026502576792465
[2025-11-26 19:22:57] 2025-11-27 00:22:03,737 | INFO     | current chi2=2.1026502576792465 (change=26.211372768131564 %)
[2025-11-26 19:22:57] 2025-11-27 00:22:03,738 | INFO     | sum of square deviations: 469142848289.432
[2025-11-26 19:22:57] 2025-11-27 00:22:03,762 | INFO     | sum of deviations: 2834079590788.1626
[2025-11-26 19:22:57] 2025-11-27 00:22:03,762 | INFO     | mean x: 1764167001.1271777
[2025-11-26 19:22:57] 2025-11-27 00:22:03,762 | INFO     | mean y: 2881915.5331010455
[2025-11-26 19:22:57] 2025-11-27 00:22:03,762 | INFO     | intersect: -10654404475.736649
[2025-11-26 19:22:57] 2025-11-27 00:22:03,763 | INFO     | chi2: 2.064812261635935
[2025-11-26 19:22:57] 2025-11-27 00:22:03,763 | INFO     | current chi2=2.064812261635935 (change=1.799538268674047 %)
[2025-11-26 19:22:57] 2025-11-27 00:22:03,763 | INFO     | right removable region: 1147
[2025-11-26 19:22:57] 2025-11-27 00:22:03,764 | INFO     | sum of square deviations: 481508871535.8318
[2025-11-26 19:22:57] 2025-11-27 00:22:03,789 | INFO     | sum of deviations: 2018550416555.8167
[2025-11-26 19:22:57] 2025-11-27 00:22:03,789 | INFO     | mean x: 1764167611.1217616
[2025-11-26 19:22:57] 2025-11-27 00:22:03,789 | INFO     | mean y: 2875056.0509499134
[2025-11-26 19:22:57] 2025-11-27 00:22:03,789 | INFO     | intersect: -7392754550.825593
[2025-11-26 19:22:57] 2025-11-27 00:22:03,790 | INFO     | chi2: 4.150817042410722
[2025-11-26 19:22:57] 2025-11-27 00:22:03,790 | INFO     | current chi2=4.150817042410722 (change=29.365143925550342 %)
[2025-11-26 19:22:57] 2025-11-27 00:22:03,791 | INFO     | sum of square deviations: 475298669453.37256
[2025-11-26 19:22:57] 2025-11-27 00:22:03,816 | INFO     | sum of deviations: 1928958183098.9175
[2025-11-26 19:22:57] 2025-11-27 00:22:03,816 | INFO     | mean x: 1764167763.6209886
[2025-11-26 19:22:57] 2025-11-27 00:22:03,816 | INFO     | mean y: 2877255.7389418907
[2025-11-26 19:22:57] 2025-11-27 00:22:03,816 | INFO     | intersect: -7156843700.159635
[2025-11-26 19:22:57] 2025-11-27 00:22:03,817 | INFO     | chi2: 4.070810608068778
[2025-11-26 19:22:57] 2025-11-27 00:22:03,817 | INFO     | current chi2=4.070810608068778 (change=1.9274864086873227 %)
[2025-11-26 19:22:57] 2025-11-27 00:22:03,817 | INFO     | left removable region: 20
[2025-11-26 19:22:57] 2025-11-27 00:22:03,818 | INFO     | sum of square deviations: 443865218896.7064
[2025-11-26 19:22:57] 2025-11-27 00:22:03,841 | INFO     | sum of deviations: 2343307368281.013
[2025-11-26 19:22:57] 2025-11-27 00:22:03,841 | INFO     | mean x: 1764167580.629991
[2025-11-26 19:22:57] 2025-11-27 00:22:03,841 | INFO     | mean y: 2894028.5971606034
[2025-11-26 19:22:57] 2025-11-27 00:22:03,842 | INFO     | intersect: -9310714505.201435
[2025-11-26 19:22:57] 2025-11-27 00:22:03,843 | INFO     | chi2: 0.200471335215755
[2025-11-26 19:22:57] 2025-11-27 00:22:03,843 | INFO     | current memory leak: 5.28 B/s (using 1127 data points, chi2=0.20)
[2025-11-26 19:22:57] 2025-11-27 00:22:03,844 | INFO     | could have reported an average CPU frequency of 2603 MHz (42 samples)
[2025-11-26 19:22:57] 2025-11-27 00:22:03,844 | INFO     | ..............................
[2025-11-26 19:22:57] 2025-11-27 00:22:03,844 | INFO     | . Timing measurements:
[2025-11-26 19:22:57] 2025-11-27 00:22:03,844 | INFO     | . get job = 0 s
[2025-11-26 19:22:57] 2025-11-27 00:22:03,844 | INFO     | . initial setup = 2 s
[2025-11-26 19:22:57] 2025-11-27 00:22:03,844 | INFO     | . payload setup = 4 s
[2025-11-26 19:22:57] 2025-11-27 00:22:03,844 | INFO     | . stage-in = 0 s
[2025-11-26 19:22:57] 2025-11-27 00:22:03,844 | INFO     | . payload execution = 70898 s
[2025-11-26 19:22:57] 2025-11-27 00:22:03,845 | INFO     | . stage-out = 3 s
[2025-11-26 19:22:57] 2025-11-27 00:22:03,845 | INFO     | . log creation = 0 s
[2025-11-26 19:22:57] 2025-11-27 00:22:03,845 | INFO     | ..............................
[2025-11-26 19:22:57] 2025-11-27 00:22:03,939 | INFO     | 
[2025-11-26 19:22:57] 2025-11-27 00:22:03,940 | INFO     | job summary report
[2025-11-26 19:22:57] 2025-11-27 00:22:03,940 | INFO     | --------------------------------------------------
[2025-11-26 19:22:57] 2025-11-27 00:22:03,940 | INFO     | PanDA job id: 6897864975
[2025-11-26 19:22:57] 2025-11-27 00:22:03,941 | INFO     | task id: 47556161
[2025-11-26 19:22:57] 2025-11-27 00:22:03,942 | INFO     | errors: (none)
[2025-11-26 19:22:57] 2025-11-27 00:22:03,942 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:22:57] 2025-11-27 00:22:03,942 | INFO     | pilot state: finished 
[2025-11-26 19:22:57] 2025-11-27 00:22:03,942 | INFO     | transexitcode: 0
[2025-11-26 19:22:57] 2025-11-27 00:22:03,942 | INFO     | exeerrorcode: 0
[2025-11-26 19:22:57] 2025-11-27 00:22:03,942 | INFO     | exeerrordiag: 
[2025-11-26 19:22:57] 2025-11-27 00:22:03,942 | INFO     | exitcode: 0
[2025-11-26 19:22:57] 2025-11-27 00:22:03,942 | INFO     | exitmsg: OK
[2025-11-26 19:22:57] 2025-11-27 00:22:03,943 | INFO     | cpuconsumptiontime: 551596 s
[2025-11-26 19:22:57] 2025-11-27 00:22:03,943 | INFO     | nevents: 1000
[2025-11-26 19:22:57] 2025-11-27 00:22:03,943 | INFO     | neventsw: 0
[2025-11-26 19:22:57] 2025-11-27 00:22:03,943 | INFO     | pid: 5896
[2025-11-26 19:22:57] 2025-11-27 00:22:03,943 | INFO     | pgrp: 5896
[2025-11-26 19:22:57] 2025-11-27 00:22:03,943 | INFO     | corecount: 8
[2025-11-26 19:22:57] 2025-11-27 00:22:03,943 | INFO     | event service: False
[2025-11-26 19:22:57] 2025-11-27 00:22:03,943 | INFO     | sizes: {0: 2284151, 1: 2284293, 4: 2284555, 11: 2284583, 70906: 2341569, 70907: 2341568, 70912: 2350746, 70913: 2350802, 70916: 2351048}
[2025-11-26 19:22:57] 2025-11-27 00:22:03,944 | INFO     | --------------------------------------------------
[2025-11-26 19:22:57] 2025-11-27 00:22:03,944 | INFO     | 
[2025-11-26 19:22:57] 2025-11-27 00:22:03,944 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 19:22:57] 2025-11-27 00:22:03,961 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,962 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,962 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,962 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,962 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,962 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,962 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,962 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,962 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,962 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,963 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,963 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,963 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,963 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,963 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,963 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,963 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,963 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:22:57] 2025-11-27 00:22:03,963 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,964 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:22:57] 2025-11-27 00:22:03,964 | INFO     | job 6897864975 has completed (purged errors)
[2025-11-26 19:22:57] 2025-11-27 00:22:03,964 | INFO     | overall cleanup function is called
[2025-11-26 19:22:57] 2025-11-27 00:22:04,977 | INFO     | --- collectZombieJob: --- 10, [5896]
[2025-11-26 19:22:57] 2025-11-27 00:22:04,977 | INFO     | zombie collector waiting for pid 5896
[2025-11-26 19:22:57] 2025-11-27 00:22:04,977 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:22:57] 2025-11-27 00:22:04,977 | INFO     | collected zombie processes
[2025-11-26 19:22:57] 2025-11-27 00:22:04,977 | INFO     | will attempt to kill all subprocesses of pid=5896
[2025-11-26 19:22:57] 2025-11-27 00:22:05,088 | INFO     | process IDs to be killed: [5896] (in reverse order)
[2025-11-26 19:22:57] 2025-11-27 00:22:05,134 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:22:57] 2025-11-27 00:22:05,135 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:22:57] 2025-11-27 00:22:05,137 | INFO     | did not find any defunct processes belonging to 5896
[2025-11-26 19:22:57] 2025-11-27 00:22:05,140 | INFO     | did not find any defunct processes belonging to 5896
[2025-11-26 19:22:57] 2025-11-27 00:22:05,141 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:22:57] 2025-11-27 00:22:05,142 | INFO     | ready for new job
[2025-11-26 19:22:57] 2025-11-27 00:22:05,142 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:22:57] 2025-11-27 00:22:05,146 | INFO     | ***************************************
[2025-11-26 19:22:57] 2025-11-27 00:22:05,146 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:22:57] 2025-11-27 00:22:05,146 | INFO     | ***************************************
[2025-11-26 19:22:57] 2025-11-27 00:22:05,146 | INFO     | 
[2025-11-26 19:22:57] 2025-11-27 00:22:05,147 | INFO     | architecture information:
[2025-11-26 19:22:57] 2025-11-27 00:22:05,148 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:22:57] 2025-11-27 00:22:05,159 | INFO     | cat /etc/os-release:
[2025-11-26 19:22:57] NAME="CentOS Linux"
[2025-11-26 19:22:57] VERSION="7 (Core)"
[2025-11-26 19:22:57] ID="centos"
[2025-11-26 19:22:57] ID_LIKE="rhel fedora"
[2025-11-26 19:22:57] VERSION_ID="7"
[2025-11-26 19:22:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:22:57] ANSI_COLOR="0;31"
[2025-11-26 19:22:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:22:57] HOME_URL="https://www.centos.org/"
[2025-11-26 19:22:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:22:57] 
[2025-11-26 19:22:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:22:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:22:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:22:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:22:57] 
[2025-11-26 19:22:57] 2025-11-27 00:22:05,159 | INFO     | ***************************************
[2025-11-26 19:22:57] 2025-11-27 00:22:05,662 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 19:22:57] 2025-11-27 00:22:05,678 | INFO     | sufficient remaining disk space (25751977984 B)
[2025-11-26 19:22:57] 2025-11-27 00:22:05,679 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:22:57] 2025-11-27 00:22:05,679 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:22:57] 2025-11-27 00:22:05,679 | INFO     | update_server=False
[2025-11-26 19:22:57] 2025-11-27 00:22:05,679 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:22:57] 2025-11-27 00:22:05,679 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:22:57] 2025-11-27 00:22:05,680 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:22:57] 2025-11-27 00:22:05,680 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:22:57] 2025-11-27 00:22:05,680 | INFO     | aborting loop
[2025-11-26 19:22:57] 2025-11-27 00:22:06,231 | INFO     | all job control threads have been joined
[2025-11-26 19:22:57] 2025-11-27 00:22:06,443 | INFO     | all data control threads have been joined
[2025-11-26 19:22:57] 2025-11-27 00:22:06,449 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:22:57] 2025-11-27 00:22:06,685 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:06,685 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:06,686 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:06,713 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:06,877 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:06,918 | INFO     | all payload control threads have been joined
[2025-11-26 19:22:57] 2025-11-27 00:22:06,974 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:07,012 | INFO     | [job] validate thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:07,236 | INFO     | [job] control thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:07,284 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:07,449 | INFO     | [data] control thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:07,685 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:07,693 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:07,885 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:07,909 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:07,923 | INFO     | [payload] control thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:10,457 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:22:57] 2025-11-27 00:22:35,581 | INFO     | PID=22778 has CPU usage=7.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-26 19:22:57] 2025-11-27 00:22:35,582 | INFO     | .. there are 3 such processes running
[2025-11-26 19:22:57] 2025-11-27 00:22:35,582 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:22:57] 2025-11-27 00:22:35,582 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:22:57] 2025-11-27 00:22:35,582 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:22:57] 2025-11-27 00:22:51,199 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:22:57] 2025-11-27 00:22:52,129 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140596231911232)>', '<ExcThread(monitor, started 140595779577600)>']
[2025-11-26 19:22:57] 2025-11-27 00:22:52,668 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:22:57] 2025-11-27 00:22:52,668 | INFO     | [monitor] control thread has ended
[2025-11-26 19:22:57] 2025-11-27 00:22:57,154 | INFO     | all workflow threads have been joined
[2025-11-26 19:22:57] 2025-11-27 00:22:57,154 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:22:57] 2025-11-27 00:22:57,155 | INFO     | traces error code: 0
[2025-11-26 19:22:57] 2025-11-27 00:22:57,156 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:22:57] 2025-11-27 00:22:57,291 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:22:57] 2025-11-27 00:22:57,293 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:22:57] 2025-11-27 00:22:57,295 [wrapper] pilotpid: 22778
[2025-11-26 19:22:57] 2025-11-27 00:22:57,298 [wrapper] Pilot exit status: 0
[2025-11-26 19:22:57] 2025-11-27 00:22:57,305 [wrapper] pandaids: 6897864975
[2025-11-26 19:22:57] 2025-11-27 00:22:57,336 [wrapper] cleanup supervisor_pilot 30986 22779
[2025-11-26 19:22:57] 2025-11-27 00:22:57,338 [wrapper] Test setup, not cleaning
[2025-11-26 19:22:57] 2025-11-27 00:22:57,341 [wrapper] apfmon messages muted
[2025-11-26 19:22:57] 2025-11-27 00:22:57,343 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:22:57] 2025-11-27 00:22:57,345 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:22:57]  *** Error codes and diagnostics ***
[2025-11-26 19:22:57]     "exeErrorCode": 0,
[2025-11-26 19:22:57]     "exeErrorDiag": "",
[2025-11-26 19:22:57]     "pilotErrorCode": 0,
[2025-11-26 19:22:57]     "pilotErrorDiag": "",
[2025-11-26 19:22:57]  *** Listing of results directory ***
[2025-11-26 19:22:57] total 1344764
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 19:22:57] -rwx------ 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas       100 Nov 25 23:39 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:22:57] -rwxr-xr-x 1 boincer umatlas      7986 Nov 25 23:39 run_atlas
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas       105 Nov 25 23:39 job.xml
[2025-11-26 19:22:57] -rw-r--r-- 2 boincer umatlas 411059454 Nov 25 23:39 EVNT.47483658._002347.pool.root.1
[2025-11-26 19:22:57] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 23:39 start_atlas.sh
[2025-11-26 19:22:57] drwxrwx--x 2 boincer umatlas      4096 Nov 25 23:39 shared
[2025-11-26 19:22:57] -rw-r--r-- 2 boincer umatlas    590114 Nov 25 23:39 input.tar.gz
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas         0 Nov 25 23:39 boinc_lockfile
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas      2786 Nov 25 23:39 pandaJob.out
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas        57 Nov 25 23:39 setup.sh.local
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas    991877 Nov 25 23:39 agis_schedconf.cvmfs.json
[2025-11-26 19:22:57] drwx------ 5 boincer umatlas      4096 Nov 25 23:39 pilot3
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas       533 Nov 26 19:08 boinc_task_state.xml
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas 937787543 Nov 26 19:21 HITS.47556161._003295.pool.root.1
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas      5954 Nov 26 19:21 init_data.xml
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas        95 Nov 26 19:21 pilot_heartbeat.json
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas      1065 Nov 26 19:21 memory_monitor_summary.json
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas   1516240 Nov 26 19:21 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas   2316863 Nov 26 19:21 log.47556161._003295.job.log.tgz.1
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas      8670 Nov 26 19:22 heartbeat.json
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas        29 Nov 26 19:22 wrapper_checkpoint.txt
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas      8192 Nov 26 19:22 boinc_mmap_file
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas      4821 Nov 26 19:22 pilotlog.txt
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas   9816849 Nov 26 19:22 log.47556161._003295.job.log.1
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas       353 Nov 26 19:22 output.list
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas       620 Nov 26 19:22 runtime_log
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas  12154880 Nov 26 19:22 result.tar.gz
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas      9343 Nov 26 19:22 runtime_log.err
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas       668 Nov 26 19:22 B1SMDmlbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmPkJKDmaITfXm.diag
[2025-11-26 19:22:57] -rw-r--r-- 1 boincer umatlas     21106 Nov 26 19:22 stderr.txt
[2025-11-26 19:22:57] HITS file was successfully produced:
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas 937787543 Nov 26 19:21 shared/HITS.pool.root.1
[2025-11-26 19:22:57]  *** Contents of shared directory: ***
[2025-11-26 19:22:57] total 1329712
[2025-11-26 19:22:57] -rw-r--r-- 2 boincer umatlas 411059454 Nov 25 23:39 ATLAS.root_0
[2025-11-26 19:22:57] -rw-r--r-- 2 boincer umatlas     15847 Nov 25 23:39 start_atlas.sh
[2025-11-26 19:22:57] -rw-r--r-- 2 boincer umatlas    590114 Nov 25 23:39 input.tar.gz
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas 937787543 Nov 26 19:21 HITS.pool.root.1
[2025-11-26 19:22:57] -rw------- 1 boincer umatlas  12154880 Nov 26 19:22 result.tar.gz
19:22:59 (17240): run_atlas exited; CPU time 550814.718941
19:22:59 (17240): called boinc_finish(0)

</stderr_txt>
]]>

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