Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:02 (2668033): wrapper (7.7.26015): starting
00:04:02 (2668033): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:04:02] Arguments: --nthreads 9
[2025-11-26 00:04:02] Threads: 9
[2025-11-26 00:04:02] Checking for CVMFS
[2025-11-26 00:04:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:04:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:04:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:04:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:04:03] 2.13.3.0 11771 29560 238076 153309 1 365 29855076 32935937 41963 16776704 0 210192438 99.599 217702127 38347 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:04:03] CVMFS is ok
[2025-11-26 00:04:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:04:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:04:03] Further information can be found at the LHC@home message board.
[2025-11-26 00:04:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:04:03] Checking for apptainer binary...
[2025-11-26 00:04:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:04:03] Running /usr/bin/apptainer --version
[2025-11-26 00:04:03] apptainer version 1.4.4-1.el9
[2025-11-26 00:04:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:04:04] c7-2-14.aglt2.org
[2025-11-26 00:04:04] apptainer works
[2025-11-26 00:04:04] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:04:04] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:04:04] Starting ATLAS job with PandaID=6897863816
[2025-11-26 00:04:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 14:31:41]  *** The last 200 lines of the pilot log: ***
[2025-11-26 14:31:41] 2025-11-26 19:30:56,779 | INFO     | monitor loop #2921: job 0:6897863816 is in state 'finished'
[2025-11-26 14:31:41] 2025-11-26 19:30:56,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:31:41] 2025-11-26 19:30:56,885 | INFO     | time since job start (51960s) is within the limit (172800.0s)
[2025-11-26 14:31:41] 2025-11-26 19:30:58,908 | INFO     | time since job start (51962s) is within the limit (172800.0s)
[2025-11-26 14:31:41] 2025-11-26 19:30:59,287 | INFO     | monitor loop #2922: job 0:6897863816 is in state 'finished'
[2025-11-26 14:31:41] 2025-11-26 19:30:59,287 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:31:41] 2025-11-26 19:31:00,916 | INFO     | time since job start (51964s) is within the limit (172800.0s)
[2025-11-26 14:31:41] 2025-11-26 19:31:01,792 | INFO     | monitor loop #2923: job 0:6897863816 is in state 'finished'
[2025-11-26 14:31:41] 2025-11-26 19:31:01,792 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:31:41] 2025-11-26 19:31:03,507 | INFO     | PID=2672818 has CPU usage=14.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 14:31:41] 2025-11-26 19:31:03,507 | INFO     | .. there are 61 such processes running
[2025-11-26 14:31:41] 2025-11-26 19:31:04,317 | INFO     | monitor loop #2924: job 0:6897863816 is in state 'finished'
[2025-11-26 14:31:41] 2025-11-26 19:31:04,317 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:31:41] 2025-11-26 19:31:04,508 | INFO     | time since job start (51968s) is within the limit (172800.0s)
[2025-11-26 14:31:41] 2025-11-26 19:31:06,515 | INFO     | time since job start (51970s) is within the limit (172800.0s)
[2025-11-26 14:31:41] 2025-11-26 19:31:06,824 | INFO     | monitor loop #2925: job 0:6897863816 is in state 'finished'
[2025-11-26 14:31:41] 2025-11-26 19:31:06,824 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 14:31:41] 2025-11-26 19:31:06,915 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-26 14:31:41] 2025-11-26 19:31:06,925 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 3177.233208333333
[2025-11-26 14:31:41] 2025-11-26 19:31:06,955 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6897863816/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 14:31:41] 2025-11-26 19:31:06,956 | INFO     | extracted standard info from prmon json
[2025-11-26 14:31:41] 2025-11-26 19:31:06,956 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 14:31:41] 2025-11-26 19:31:06,956 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 14:31:41] 2025-11-26 19:31:06,978 | INFO     | fitting pss+swap vs Time
[2025-11-26 14:31:41] 2025-11-26 19:31:06,979 | INFO     | sum of square deviations: 190424183790.75775
[2025-11-26 14:31:41] 2025-11-26 19:31:07,008 | INFO     | sum of deviations: 1201111854791.853
[2025-11-26 14:31:41] 2025-11-26 19:31:07,008 | INFO     | mean x: 1764159488.312941
[2025-11-26 14:31:41] 2025-11-26 19:31:07,009 | INFO     | mean y: 2981191.722352941
[2025-11-26 14:31:41] 2025-11-26 19:31:07,009 | INFO     | intersect: -11124559612.047377
[2025-11-26 14:31:41] 2025-11-26 19:31:07,009 | INFO     | chi2: 16.915660650393583
[2025-11-26 14:31:41] 2025-11-26 19:31:07,010 | INFO     | sum of square deviations: 187083597019.93347
[2025-11-26 14:31:41] 2025-11-26 19:31:07,042 | INFO     | sum of deviations: 1539430753182.4412
[2025-11-26 14:31:41] 2025-11-26 19:31:07,042 | INFO     | mean x: 1764159335.8177514
[2025-11-26 14:31:41] 2025-11-26 19:31:07,042 | INFO     | mean y: 2996632.223668639
[2025-11-26 14:31:41] 2025-11-26 19:31:07,042 | INFO     | intersect: -14513514586.995575
[2025-11-26 14:31:41] 2025-11-26 19:31:07,043 | INFO     | chi2: 12.707949619968355
[2025-11-26 14:31:41] 2025-11-26 19:31:07,043 | INFO     | current chi2=12.707949619968355 (change=24.874647921760747 %)
[2025-11-26 14:31:41] 2025-11-26 19:31:07,043 | INFO     | right removable region: 844
[2025-11-26 14:31:41] 2025-11-26 19:31:07,048 | INFO     | sum of square deviations: 187083175509.93362
[2025-11-26 14:31:41] 2025-11-26 19:31:07,074 | INFO     | sum of deviations: 858890641743.7529
[2025-11-26 14:31:41] 2025-11-26 19:31:07,074 | INFO     | mean x: 1764159640.8177514
[2025-11-26 14:31:41] 2025-11-26 19:31:07,074 | INFO     | mean y: 2996810.323076923
[2025-11-26 14:31:41] 2025-11-26 19:31:07,074 | INFO     | intersect: -8096182615.674708
[2025-11-26 14:31:41] 2025-11-26 19:31:07,075 | INFO     | chi2: 13.067746391578432
[2025-11-26 14:31:41] 2025-11-26 19:31:07,075 | INFO     | current chi2=13.067746391578432 (change=22.747643963439412 %)
[2025-11-26 14:31:41] 2025-11-26 19:31:07,075 | INFO     | left removable region: 10
[2025-11-26 14:31:41] 2025-11-26 19:31:07,076 | INFO     | sum of square deviations: 179871482435.9808
[2025-11-26 14:31:41] 2025-11-26 19:31:07,105 | INFO     | sum of deviations: 1024801271567.2593
[2025-11-26 14:31:41] 2025-11-26 19:31:07,105 | INFO     | mean x: 1764159610.3285372
[2025-11-26 14:31:41] 2025-11-26 19:31:07,105 | INFO     | mean y: 3025563.5647482015
[2025-11-26 14:31:41] 2025-11-26 19:31:07,105 | INFO     | intersect: -10048111989.914589
[2025-11-26 14:31:41] 2025-11-26 19:31:07,106 | INFO     | chi2: 6.378718500073914
[2025-11-26 14:31:41] 2025-11-26 19:31:07,106 | INFO     | current memory leak: 5.70 B/s (using 834 data points, chi2=6.38)
[2025-11-26 14:31:41] 2025-11-26 19:31:07,111 | INFO     | could have reported an average CPU frequency of 3225 MHz (32 samples)
[2025-11-26 14:31:41] 2025-11-26 19:31:07,111 | INFO     | ..............................
[2025-11-26 14:31:41] 2025-11-26 19:31:07,111 | INFO     | . Timing measurements:
[2025-11-26 14:31:41] 2025-11-26 19:31:07,111 | INFO     | . get job = 0 s
[2025-11-26 14:31:41] 2025-11-26 19:31:07,111 | INFO     | . initial setup = 5 s
[2025-11-26 14:31:41] 2025-11-26 19:31:07,111 | INFO     | . payload setup = 29 s
[2025-11-26 14:31:41] 2025-11-26 19:31:07,112 | INFO     | . stage-in = 0 s
[2025-11-26 14:31:41] 2025-11-26 19:31:07,112 | INFO     | . payload execution = 51865 s
[2025-11-26 14:31:41] 2025-11-26 19:31:07,112 | INFO     | . stage-out = 4 s
[2025-11-26 14:31:41] 2025-11-26 19:31:07,112 | INFO     | . log creation = 0 s
[2025-11-26 14:31:41] 2025-11-26 19:31:07,112 | INFO     | ..............................
[2025-11-26 14:31:41] 2025-11-26 19:31:07,306 | INFO     | 
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | job summary report
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | --------------------------------------------------
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | PanDA job id: 6897863816
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | task id: 47556173
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | errors: (none)
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | pilot state: finished 
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | transexitcode: 0
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | exeerrorcode: 0
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | exeerrordiag: 
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | exitcode: 0
[2025-11-26 14:31:41] 2025-11-26 19:31:07,307 | INFO     | exitmsg: OK
[2025-11-26 14:31:41] 2025-11-26 19:31:07,308 | INFO     | cpuconsumptiontime: 190752 s
[2025-11-26 14:31:41] 2025-11-26 19:31:07,308 | INFO     | nevents: 1000
[2025-11-26 14:31:41] 2025-11-26 19:31:07,308 | INFO     | neventsw: 0
[2025-11-26 14:31:41] 2025-11-26 19:31:07,308 | INFO     | pid: 2684501
[2025-11-26 14:31:41] 2025-11-26 19:31:07,308 | INFO     | pgrp: 2684501
[2025-11-26 14:31:41] 2025-11-26 19:31:07,308 | INFO     | corecount: 9
[2025-11-26 14:31:41] 2025-11-26 19:31:07,308 | INFO     | event service: False
[2025-11-26 14:31:41] 2025-11-26 19:31:07,308 | INFO     | sizes: {0: 2284263, 11: 2284263, 22: 2284581, 33: 2284581, 51898: 2333268, 51899: 2333267, 51904: 2342445, 51907: 2342501, 51919: 2342747}
[2025-11-26 14:31:41] 2025-11-26 19:31:07,308 | INFO     | --------------------------------------------------
[2025-11-26 14:31:41] 2025-11-26 19:31:07,308 | INFO     | 
[2025-11-26 14:31:41] 2025-11-26 19:31:07,308 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 14:31:41] 2025-11-26 19:31:07,383 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,383 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,383 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,383 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,384 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,384 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,384 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,384 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,384 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,384 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,384 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,384 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,384 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,384 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,384 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,385 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,385 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,385 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 14:31:41] 2025-11-26 19:31:07,385 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,385 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 14:31:41] 2025-11-26 19:31:07,385 | INFO     | job 6897863816 has completed (purged errors)
[2025-11-26 14:31:41] 2025-11-26 19:31:07,385 | INFO     | overall cleanup function is called
[2025-11-26 14:31:41] 2025-11-26 19:31:08,418 | INFO     | --- collectZombieJob: --- 10, [2684501]
[2025-11-26 14:31:41] 2025-11-26 19:31:08,419 | INFO     | zombie collector waiting for pid 2684501
[2025-11-26 14:31:41] 2025-11-26 19:31:08,419 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 14:31:41] 2025-11-26 19:31:08,419 | INFO     | collected zombie processes
[2025-11-26 14:31:41] 2025-11-26 19:31:08,419 | INFO     | will attempt to kill all subprocesses of pid=2684501
[2025-11-26 14:31:41] 2025-11-26 19:31:09,340 | INFO     | process IDs to be killed: [2684501] (in reverse order)
[2025-11-26 14:31:41] 2025-11-26 19:31:09,872 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 14:31:41] 2025-11-26 19:31:09,873 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 14:31:41] 2025-11-26 19:31:09,905 | INFO     | did not find any defunct processes belonging to 2684501
[2025-11-26 14:31:41] 2025-11-26 19:31:09,942 | INFO     | did not find any defunct processes belonging to 2684501
[2025-11-26 14:31:41] 2025-11-26 19:31:09,946 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 14:31:41] 2025-11-26 19:31:09,946 | INFO     | ready for new job
[2025-11-26 14:31:41] 2025-11-26 19:31:09,946 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 14:31:41] 2025-11-26 19:31:09,952 | INFO     | ***************************************
[2025-11-26 14:31:41] 2025-11-26 19:31:09,952 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 14:31:41] 2025-11-26 19:31:09,952 | INFO     | ***************************************
[2025-11-26 14:31:41] 2025-11-26 19:31:09,952 | INFO     | 
[2025-11-26 14:31:41] 2025-11-26 19:31:09,970 | INFO     | architecture information:
[2025-11-26 14:31:41] 2025-11-26 19:31:09,984 | INFO     | executing command: cat /etc/os-release
[2025-11-26 14:31:41] 2025-11-26 19:31:10,055 | INFO     | cat /etc/os-release:
[2025-11-26 14:31:41] NAME="CentOS Linux"
[2025-11-26 14:31:41] VERSION="7 (Core)"
[2025-11-26 14:31:41] ID="centos"
[2025-11-26 14:31:41] ID_LIKE="rhel fedora"
[2025-11-26 14:31:41] VERSION_ID="7"
[2025-11-26 14:31:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 14:31:41] ANSI_COLOR="0;31"
[2025-11-26 14:31:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 14:31:41] HOME_URL="https://www.centos.org/"
[2025-11-26 14:31:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 14:31:41] 
[2025-11-26 14:31:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 14:31:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 14:31:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 14:31:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 14:31:41] 
[2025-11-26 14:31:41] 2025-11-26 19:31:10,055 | INFO     | ***************************************
[2025-11-26 14:31:41] 2025-11-26 19:31:10,559 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 14:31:41] 2025-11-26 19:31:10,589 | INFO     | sufficient remaining disk space (66123202560 B)
[2025-11-26 14:31:41] 2025-11-26 19:31:10,590 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 14:31:41] 2025-11-26 19:31:10,591 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 14:31:41] 2025-11-26 19:31:10,592 | INFO     | update_server=False
[2025-11-26 14:31:41] 2025-11-26 19:31:10,592 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 14:31:41] 2025-11-26 19:31:10,593 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 14:31:41] 2025-11-26 19:31:10,595 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 14:31:41] 2025-11-26 19:31:10,596 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:31:41] 2025-11-26 19:31:10,596 | INFO     | aborting loop
[2025-11-26 14:31:41] 2025-11-26 19:31:10,891 | INFO     | all job control threads have been joined
[2025-11-26 14:31:41] 2025-11-26 19:31:11,307 | INFO     | all payload control threads have been joined
[2025-11-26 14:31:41] 2025-11-26 19:31:11,468 | INFO     | all data control threads have been joined
[2025-11-26 14:31:41] 2025-11-26 19:31:11,598 | INFO     | [job] retrieve thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:11,602 | INFO     | [job] job monitor thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:11,610 | INFO     | [payload] failed_post thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:11,910 | INFO     | [job] validate thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:11,915 | INFO     | [job] control thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:11,972 | INFO     | [payload] validate_post thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:12,030 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:12,079 | INFO     | [data] copytool_in thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:12,273 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:12,295 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:12,314 | INFO     | [payload] control thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:12,331 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 14:31:41] 2025-11-26 19:31:12,475 | INFO     | [data] control thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:12,606 | INFO     | [data] copytool_out thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:13,050 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:13,338 | INFO     | [job] queue monitor thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:14,605 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 14:31:41] 2025-11-26 19:31:29,722 | INFO     | [monitor] cgroup control has ended
[2025-11-26 14:31:41] 2025-11-26 19:31:30,764 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139982801069888)>', '<ExcThread(monitor, started 139982144517888)>']
[2025-11-26 14:31:41] 2025-11-26 19:31:35,789 | INFO     | all workflow threads have been joined
[2025-11-26 14:31:41] 2025-11-26 19:31:35,790 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 14:31:41] 2025-11-26 19:31:35,790 | INFO     | traces error code: 0
[2025-11-26 14:31:41] 2025-11-26 19:31:35,790 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 14:31:41] 2025-11-26 19:31:41,172 | INFO     | PID=2672818 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 14:31:41] 2025-11-26 19:31:41,172 | INFO     | .. there are 61 such processes running
[2025-11-26 14:31:41] 2025-11-26 19:31:41,173 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 14:31:41] 2025-11-26 19:31:41,173 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 14:31:41] 2025-11-26 19:31:41,173 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 14:31:41] 2025-11-26 19:31:41,173 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 14:31:41] 2025-11-26 19:31:41,173 | INFO     | [monitor] control thread has ended
[2025-11-26 14:31:41] 2025-11-26 19:31:41,443 [wrapper] ==== pilot stdout END ====
[2025-11-26 14:31:41] 2025-11-26 19:31:41,446 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 14:31:41] 2025-11-26 19:31:41,448 [wrapper] pilotpid: 2672818
[2025-11-26 14:31:41] 2025-11-26 19:31:41,451 [wrapper] Pilot exit status: 0
[2025-11-26 14:31:41] 2025-11-26 19:31:41,460 [wrapper] pandaids: 6897863816
[2025-11-26 14:31:41] 2025-11-26 19:31:41,610 [wrapper] cleanup supervisor_pilot 4039471 2672819
[2025-11-26 14:31:41] 2025-11-26 19:31:41,614 [wrapper] Test setup, not cleaning
[2025-11-26 14:31:41] 2025-11-26 19:31:41,617 [wrapper] apfmon messages muted
[2025-11-26 14:31:41] 2025-11-26 19:31:41,620 [wrapper] ==== wrapper stdout END ====
[2025-11-26 14:31:41] 2025-11-26 19:31:41,622 [wrapper] ==== wrapper stderr END ====
[2025-11-26 14:31:41]  *** Error codes and diagnostics ***
[2025-11-26 14:31:41]     "exeErrorCode": 0,
[2025-11-26 14:31:41]     "exeErrorDiag": "",
[2025-11-26 14:31:41]     "pilotErrorCode": 0,
[2025-11-26 14:31:41]     "pilotErrorDiag": "",
[2025-11-26 14:31:41]  *** Listing of results directory ***
[2025-11-26 14:31:41] total 1314556
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 14:31:41] -rwx------. 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 14:31:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:04 run_atlas
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:04 job.xml
[2025-11-26 14:31:41] -rw-r--r--. 2 boincer umatlas 409914941 Nov 26 00:04 EVNT.47483658._003125.pool.root.1
[2025-11-26 14:31:41] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 14:31:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:04 shared
[2025-11-26 14:31:41] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:04 input.tar.gz
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:04 boinc_lockfile
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:04 pandaJob.out
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas        57 Nov 26 00:04 setup.sh.local
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas    991877 Nov 26 00:04 agis_schedconf.cvmfs.json
[2025-11-26 14:31:41] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas       533 Nov 26 14:08 boinc_task_state.xml
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas 915286641 Nov 26 14:25 HITS.47556173._000920.pool.root.1
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas      6948 Nov 26 14:28 init_data.xml
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas      1070 Nov 26 14:30 memory_monitor_summary.json
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas   1516240 Nov 26 14:30 agis_ddmendpoints.agis.ALL.json
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas   2130118 Nov 26 14:30 log.47556173._000920.job.log.tgz.1
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas        95 Nov 26 14:30 pilot_heartbeat.json
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas      8629 Nov 26 14:31 heartbeat.json
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas        29 Nov 26 14:31 wrapper_checkpoint.txt
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas       823 Nov 26 14:31 pilotlog.txt
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 14:31 boinc_mmap_file
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas   6363387 Nov 26 14:31 log.47556173._000920.job.log.1
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas       353 Nov 26 14:31 output.list
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas       620 Nov 26 14:31 runtime_log
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas   8509440 Nov 26 14:31 result.tar.gz
[2025-11-26 14:31:41] -rw-------. 1 boincer umatlas       663 Nov 26 14:31 T32NDmlbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmVfMKDmKzPI0n.diag
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas      9338 Nov 26 14:31 runtime_log.err
[2025-11-26 14:31:41] -rw-r--r--. 1 boincer umatlas     21874 Nov 26 14:31 stderr.txt
[2025-11-26 14:31:42] HITS file was successfully produced:
[2025-11-26 14:31:42] -rw-------. 1 boincer umatlas 915286641 Nov 26 14:25 shared/HITS.pool.root.1
[2025-11-26 14:31:42]  *** Contents of shared directory: ***
[2025-11-26 14:31:42] total 1303060
[2025-11-26 14:31:42] -rw-r--r--. 2 boincer umatlas 409914941 Nov 26 00:04 ATLAS.root_0
[2025-11-26 14:31:42] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:04 start_atlas.sh
[2025-11-26 14:31:42] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:04 input.tar.gz
[2025-11-26 14:31:42] -rw-------. 1 boincer umatlas 915286641 Nov 26 14:25 HITS.pool.root.1
[2025-11-26 14:31:42] -rw-------. 1 boincer umatlas   8509440 Nov 26 14:31 result.tar.gz
14:31:43 (2668033): run_atlas exited; CPU time 191742.826062
14:31:43 (2668033): called boinc_finish(0)

</stderr_txt>
]]>

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