Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:59 (2832814): wrapper (7.7.26015): starting
00:02:59 (2832814): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:02:59] Arguments: --nthreads 9
[2025-11-26 00:02:59] Threads: 9
[2025-11-26 00:02:59] Checking for CVMFS
[2025-11-26 00:02:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:03:00] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:03:00] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:03:01] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:03:01] 2.13.3.0 15551 27903 359660 153309 2 597 24352871 32935936 27926 16776704 0 51322568 99.566 60773437 39923 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:03:01] CVMFS is ok
[2025-11-26 00:03:01] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:03:01] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:03:01] Further information can be found at the LHC@home message board.
[2025-11-26 00:03:01] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:03:01] Checking for apptainer binary...
[2025-11-26 00:03:01] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:03:01] Running /usr/bin/apptainer --version
[2025-11-26 00:03:01] apptainer version 1.4.4-1.el9
[2025-11-26 00:03:01] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:03:02] c6-5-7-3.aglt2.org
[2025-11-26 00:03:02] apptainer works
[2025-11-26 00:03:02] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:03:02] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:03:02] Starting ATLAS job with PandaID=6897863676
[2025-11-26 00:03:02] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 21:24:30]  *** The last 200 lines of the pilot log: ***
[2025-11-26 21:24:30] 2025-11-27 02:23:18,783 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:24:30] 2025-11-27 02:23:20,587 | INFO     | time since job start (76755s) is within the limit (172800.0s)
[2025-11-26 21:24:30] 2025-11-27 02:23:21,353 | INFO     | monitor loop #4935: job 0:6897863676 is in state 'finished'
[2025-11-26 21:24:30] 2025-11-27 02:23:21,353 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:24:30] 2025-11-27 02:23:22,609 | INFO     | time since job start (76757s) is within the limit (172800.0s)
[2025-11-26 21:24:30] 2025-11-27 02:23:23,905 | INFO     | monitor loop #4936: job 0:6897863676 is in state 'finished'
[2025-11-26 21:24:30] 2025-11-27 02:23:23,905 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:24:30] 2025-11-27 02:23:24,633 | INFO     | time since job start (76759s) is within the limit (172800.0s)
[2025-11-26 21:24:30] 2025-11-27 02:23:26,410 | INFO     | monitor loop #4937: job 0:6897863676 is in state 'finished'
[2025-11-26 21:24:30] 2025-11-27 02:23:26,410 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:24:30] 2025-11-27 02:23:26,656 | INFO     | time since job start (76761s) is within the limit (172800.0s)
[2025-11-26 21:24:30] 2025-11-27 02:23:28,663 | INFO     | time since job start (76763s) is within the limit (172800.0s)
[2025-11-26 21:24:30] 2025-11-27 02:23:28,923 | INFO     | monitor loop #4938: job 0:6897863676 is in state 'finished'
[2025-11-26 21:24:30] 2025-11-27 02:23:28,923 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 21:24:30] 2025-11-27 02:23:29,842 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 21:24:30] 2025-11-27 02:23:29,861 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2845.736946428572
[2025-11-26 21:24:30] 2025-11-27 02:23:29,921 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6897863676/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 21:24:30] 2025-11-27 02:23:29,922 | INFO     | extracted standard info from prmon json
[2025-11-26 21:24:30] 2025-11-27 02:23:29,922 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 21:24:30] 2025-11-27 02:23:29,922 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 21:24:30] 2025-11-27 02:23:30,016 | INFO     | fitting pss+swap vs Time
[2025-11-26 21:24:30] 2025-11-27 02:23:30,036 | INFO     | sum of square deviations: 614377879445.1559
[2025-11-26 21:24:30] 2025-11-27 02:23:30,153 | INFO     | sum of deviations: 4152837176226.381
[2025-11-26 21:24:30] 2025-11-27 02:23:30,154 | INFO     | mean x: 1764171857.4378982
[2025-11-26 21:24:30] 2025-11-27 02:23:30,154 | INFO     | mean y: 3044596.479299363
[2025-11-26 21:24:30] 2025-11-27 02:23:30,154 | INFO     | intersect: -11921731213.217564
[2025-11-26 21:24:30] 2025-11-27 02:23:30,156 | INFO     | chi2: 19.461911353829183
[2025-11-26 21:24:30] 2025-11-27 02:23:30,159 | INFO     | sum of square deviations: 607069897050.7417
[2025-11-26 21:24:30] 2025-11-27 02:23:30,278 | INFO     | sum of deviations: 4613834371334.563
[2025-11-26 21:24:30] 2025-11-27 02:23:30,279 | INFO     | mean x: 1764171704.9416466
[2025-11-26 21:24:30] 2025-11-27 02:23:30,279 | INFO     | mean y: 3054214.939248601
[2025-11-26 21:24:30] 2025-11-27 02:23:30,283 | INFO     | intersect: -13404950511.928837
[2025-11-26 21:24:30] 2025-11-27 02:23:30,284 | INFO     | chi2: 15.982433261583244
[2025-11-26 21:24:30] 2025-11-27 02:23:30,285 | INFO     | current chi2=15.982433261583244 (change=17.87839862687147 %)
[2025-11-26 21:24:30] 2025-11-27 02:23:30,285 | INFO     | right removable region: 1250
[2025-11-26 21:24:30] 2025-11-27 02:23:30,286 | INFO     | sum of square deviations: 607069178470.742
[2025-11-26 21:24:30] 2025-11-27 02:23:30,337 | INFO     | sum of deviations: 3622952081275.7656
[2025-11-26 21:24:30] 2025-11-27 02:23:30,338 | INFO     | mean x: 1764172009.9416466
[2025-11-26 21:24:30] 2025-11-27 02:23:30,338 | INFO     | mean y: 3055651.503597122
[2025-11-26 21:24:30] 2025-11-27 02:23:30,338 | INFO     | intersect: -10525416031.488594
[2025-11-26 21:24:30] 2025-11-27 02:23:30,344 | INFO     | chi2: 15.41149734772871
[2025-11-26 21:24:30] 2025-11-27 02:23:30,344 | INFO     | current chi2=15.41149734772871 (change=20.812005216042376 %)
[2025-11-26 21:24:30] 2025-11-27 02:23:30,344 | INFO     | left removable region: 10
[2025-11-26 21:24:30] 2025-11-27 02:23:30,345 | INFO     | sum of square deviations: 591195389898.9004
[2025-11-26 21:24:30] 2025-11-27 02:23:30,398 | INFO     | sum of deviations: 3734486864815.6543
[2025-11-26 21:24:30] 2025-11-27 02:23:30,398 | INFO     | mean x: 1764171979.45
[2025-11-26 21:24:30] 2025-11-27 02:23:30,398 | INFO     | mean y: 3076528.6798387095
[2025-11-26 21:24:30] 2025-11-27 02:23:30,398 | INFO     | intersect: -11140916129.413301
[2025-11-26 21:24:30] 2025-11-27 02:23:30,399 | INFO     | chi2: 8.56180983392892
[2025-11-26 21:24:30] 2025-11-27 02:23:30,400 | INFO     | current memory leak: 6.32 B/s (using 1240 data points, chi2=8.56)
[2025-11-26 21:24:30] 2025-11-27 02:23:30,406 | INFO     | could have reported an average CPU frequency of 3027 MHz (45 samples)
[2025-11-26 21:24:30] 2025-11-27 02:23:30,406 | INFO     | ..............................
[2025-11-26 21:24:30] 2025-11-27 02:23:30,406 | INFO     | . Timing measurements:
[2025-11-26 21:24:30] 2025-11-27 02:23:30,406 | INFO     | . get job = 0 s
[2025-11-26 21:24:30] 2025-11-27 02:23:30,406 | INFO     | . initial setup = 5 s
[2025-11-26 21:24:30] 2025-11-27 02:23:30,406 | INFO     | . payload setup = 41 s
[2025-11-26 21:24:30] 2025-11-27 02:23:30,406 | INFO     | . stage-in = 0 s
[2025-11-26 21:24:30] 2025-11-27 02:23:30,406 | INFO     | . payload execution = 76607 s
[2025-11-26 21:24:30] 2025-11-27 02:23:30,406 | INFO     | . stage-out = 8 s
[2025-11-26 21:24:30] 2025-11-27 02:23:30,406 | INFO     | . log creation = 2 s
[2025-11-26 21:24:30] 2025-11-27 02:23:30,406 | INFO     | ..............................
[2025-11-26 21:24:30] 2025-11-27 02:23:30,580 | INFO     | 
[2025-11-26 21:24:30] 2025-11-27 02:23:30,609 | INFO     | job summary report
[2025-11-26 21:24:30] 2025-11-27 02:23:30,609 | INFO     | --------------------------------------------------
[2025-11-26 21:24:30] 2025-11-27 02:23:30,609 | INFO     | PanDA job id: 6897863676
[2025-11-26 21:24:30] 2025-11-27 02:23:30,609 | INFO     | task id: 47556173
[2025-11-26 21:24:30] 2025-11-27 02:23:30,609 | INFO     | errors: (none)
[2025-11-26 21:24:30] 2025-11-27 02:23:30,609 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 21:24:30] 2025-11-27 02:23:30,609 | INFO     | pilot state: finished 
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | transexitcode: 0
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | exeerrorcode: 0
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | exeerrordiag: 
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | exitcode: 0
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | exitmsg: OK
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | cpuconsumptiontime: 243059 s
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | nevents: 1000
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | neventsw: 0
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | pid: 2850207
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | pgrp: 2850207
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | corecount: 9
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | event service: False
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | sizes: {0: 2283435, 1: 2284120, 2: 2284319, 13: 2284319, 24: 2284375, 32: 2284665, 35: 2284821, 76651: 2345433, 76660: 2354427, 76661: 2354483, 76700: 2354729}
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | --------------------------------------------------
[2025-11-26 21:24:30] 2025-11-27 02:23:30,610 | INFO     | 
[2025-11-26 21:24:30] 2025-11-27 02:23:30,611 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 21:24:30] 2025-11-27 02:23:30,672 | INFO     | time since job start (76765s) is within the limit (172800.0s)
[2025-11-26 21:24:30] 2025-11-27 02:23:30,700 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,700 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,700 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,701 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,702 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 21:24:30] 2025-11-27 02:23:30,702 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,702 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 21:24:30] 2025-11-27 02:23:30,702 | INFO     | job 6897863676 has completed (purged errors)
[2025-11-26 21:24:30] 2025-11-27 02:23:30,702 | INFO     | overall cleanup function is called
[2025-11-26 21:24:30] 2025-11-27 02:23:31,794 | INFO     | --- collectZombieJob: --- 10, [2850207]
[2025-11-26 21:24:30] 2025-11-27 02:23:31,794 | INFO     | zombie collector waiting for pid 2850207
[2025-11-26 21:24:30] 2025-11-27 02:23:31,795 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 21:24:30] 2025-11-27 02:23:31,795 | INFO     | collected zombie processes
[2025-11-26 21:24:30] 2025-11-27 02:23:31,795 | INFO     | will attempt to kill all subprocesses of pid=2850207
[2025-11-26 21:24:30] 2025-11-27 02:23:32,531 | INFO     | process IDs to be killed: [2850207] (in reverse order)
[2025-11-26 21:24:30] 2025-11-27 02:23:32,972 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 21:24:30] 2025-11-27 02:23:32,973 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 21:24:30] 2025-11-27 02:23:33,072 | INFO     | did not find any defunct processes belonging to 2850207
[2025-11-26 21:24:30] 2025-11-27 02:23:33,089 | INFO     | did not find any defunct processes belonging to 2850207
[2025-11-26 21:24:30] 2025-11-27 02:23:33,090 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 21:24:30] 2025-11-27 02:23:33,090 | INFO     | ready for new job
[2025-11-26 21:24:30] 2025-11-27 02:23:33,091 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 21:24:30] 2025-11-27 02:23:33,096 | INFO     | ***************************************
[2025-11-26 21:24:30] 2025-11-27 02:23:33,096 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 21:24:30] 2025-11-27 02:23:33,096 | INFO     | ***************************************
[2025-11-26 21:24:30] 2025-11-27 02:23:33,096 | INFO     | 
[2025-11-26 21:24:30] 2025-11-27 02:23:33,099 | INFO     | architecture information:
[2025-11-26 21:24:30] 2025-11-27 02:23:33,100 | INFO     | executing command: cat /etc/os-release
[2025-11-26 21:24:30] 2025-11-27 02:23:33,169 | INFO     | cat /etc/os-release:
[2025-11-26 21:24:30] NAME="CentOS Linux"
[2025-11-26 21:24:30] VERSION="7 (Core)"
[2025-11-26 21:24:30] ID="centos"
[2025-11-26 21:24:30] ID_LIKE="rhel fedora"
[2025-11-26 21:24:30] VERSION_ID="7"
[2025-11-26 21:24:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 21:24:30] ANSI_COLOR="0;31"
[2025-11-26 21:24:30] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 21:24:30] HOME_URL="https://www.centos.org/"
[2025-11-26 21:24:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 21:24:30] 
[2025-11-26 21:24:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 21:24:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 21:24:30] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 21:24:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 21:24:30] 
[2025-11-26 21:24:30] 2025-11-27 02:23:33,169 | INFO     | ***************************************
[2025-11-26 21:24:30] 2025-11-27 02:23:33,673 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 21:24:30] 2025-11-27 02:23:33,719 | INFO     | sufficient remaining disk space (69617057792 B)
[2025-11-26 21:24:30] 2025-11-27 02:23:33,720 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 21:24:30] 2025-11-27 02:23:33,720 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 21:24:30] 2025-11-27 02:23:33,720 | INFO     | update_server=False
[2025-11-26 21:24:30] 2025-11-27 02:23:33,720 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 21:24:30] 2025-11-27 02:23:33,801 | INFO     | all job control threads have been joined
[2025-11-26 21:24:30] 2025-11-27 02:23:33,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 21:24:30] 2025-11-27 02:23:33,864 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 21:24:30] 2025-11-27 02:23:33,948 | INFO     | all payload control threads have been joined
[2025-11-26 21:24:30] 2025-11-27 02:23:34,002 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 21:24:30] 2025-11-27 02:23:34,002 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 21:24:30] 2025-11-27 02:23:34,002 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:24:30] 2025-11-27 02:23:34,002 | INFO     | will abort loop
[2025-11-26 21:24:30] 2025-11-27 02:23:34,726 | INFO     | [job] retrieve thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:34,773 | INFO     | all data control threads have been joined
[2025-11-26 21:24:30] 2025-11-27 02:23:34,807 | INFO     | [job] control thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:34,959 | INFO     | [payload] control thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:35,008 | INFO     | [job] job monitor thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:35,020 | INFO     | [job] validate thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:35,021 | INFO     | [data] copytool_in thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:35,040 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:35,194 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:35,319 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:35,337 | INFO     | [payload] failed_post thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:35,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 21:24:30] 2025-11-27 02:23:35,732 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:35,779 | INFO     | [data] control thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:35,874 | INFO     | [data] copytool_out thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:36,020 | INFO     | [payload] validate_post thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:36,576 | INFO     | [job] queue monitor thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:23:37,914 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 21:24:30] 2025-11-27 02:24:06,056 | INFO     | PID=2838649 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 21:24:30] 2025-11-27 02:24:06,056 | INFO     | .. there are 40 such processes running
[2025-11-26 21:24:30] 2025-11-27 02:24:06,057 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 21:24:30] 2025-11-27 02:24:06,057 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 21:24:30] 2025-11-27 02:24:06,057 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 21:24:30] 2025-11-27 02:24:21,289 | INFO     | [monitor] cgroup control has ended
[2025-11-26 21:24:30] 2025-11-27 02:24:22,909 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140315675445056)>', '<ExcThread(monitor, started 140315323242240)>']
[2025-11-26 21:24:30] 2025-11-27 02:24:23,220 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 21:24:30] 2025-11-27 02:24:23,220 | INFO     | [monitor] control thread has ended
[2025-11-26 21:24:30] 2025-11-27 02:24:27,937 | INFO     | all workflow threads have been joined
[2025-11-26 21:24:30] 2025-11-27 02:24:27,937 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 21:24:30] 2025-11-27 02:24:27,937 | INFO     | traces error code: 0
[2025-11-26 21:24:30] 2025-11-27 02:24:27,938 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 21:24:30] 2025-11-27 02:24:28,829 [wrapper] ==== pilot stdout END ====
[2025-11-26 21:24:30] 2025-11-27 02:24:28,863 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 21:24:30] 2025-11-27 02:24:28,883 [wrapper] pilotpid: 2838649
[2025-11-26 21:24:30] 2025-11-27 02:24:28,938 [wrapper] Pilot exit status: 0
[2025-11-26 21:24:30] 2025-11-27 02:24:29,055 [wrapper] pandaids: 6897863676
[2025-11-26 21:24:30] 2025-11-27 02:24:29,265 [wrapper] cleanup supervisor_pilot 3115392 2838650
[2025-11-26 21:24:30] 2025-11-27 02:24:29,279 [wrapper] Test setup, not cleaning
[2025-11-26 21:24:30] 2025-11-27 02:24:29,318 [wrapper] apfmon messages muted
[2025-11-26 21:24:30] 2025-11-27 02:24:29,336 [wrapper] ==== wrapper stdout END ====
[2025-11-26 21:24:30] 2025-11-27 02:24:29,366 [wrapper] ==== wrapper stderr END ====
[2025-11-26 21:24:30]  *** Error codes and diagnostics ***
[2025-11-26 21:24:30]     "exeErrorCode": 0,
[2025-11-26 21:24:30]     "exeErrorDiag": "",
[2025-11-26 21:24:30]     "pilotErrorCode": 0,
[2025-11-26 21:24:30]     "pilotErrorDiag": "",
[2025-11-26 21:24:30]  *** Listing of results directory ***
[2025-11-26 21:24:30] total 1336752
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 21:24:30] -rwx------. 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 21:24:30] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:02 run_atlas
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:02 job.xml
[2025-11-26 21:24:30] -rw-r--r--. 2 boincer umatlas 409914941 Nov 26 00:02 EVNT.47483658._003125.pool.root.1
[2025-11-26 21:24:30] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:02 shared
[2025-11-26 21:24:30] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:02 input.tar.gz
[2025-11-26 21:24:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:02 boinc_lockfile
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas      2785 Nov 26 00:03 pandaJob.out
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas        57 Nov 26 00:03 setup.sh.local
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-26 21:24:30] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas       532 Nov 26 20:58 boinc_task_state.xml
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas 929804354 Nov 26 21:21 HITS.47556173._000915.pool.root.1
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas      6844 Nov 26 21:22 init_data.xml
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas      1079 Nov 26 21:22 memory_monitor_summary.json
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas   1516240 Nov 26 21:22 agis_ddmendpoints.agis.ALL.json
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas   2488323 Nov 26 21:22 log.47556173._000915.job.log.tgz.1
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas      8652 Nov 26 21:23 heartbeat.json
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas        95 Nov 26 21:24 pilot_heartbeat.json
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas      5010 Nov 26 21:24 pilotlog.txt
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 21:24 boinc_mmap_file
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas        29 Nov 26 21:24 wrapper_checkpoint.txt
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas  10110250 Nov 26 21:24 log.47556173._000915.job.log.1
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas       353 Nov 26 21:24 output.list
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas       620 Nov 26 21:24 runtime_log
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas  12615680 Nov 26 21:24 result.tar.gz
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas       663 Nov 26 21:24 XDvNDmlbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmQfMKDmqsXrBn.diag
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 21:24 runtime_log.err
[2025-11-26 21:24:30] -rw-r--r--. 1 boincer umatlas     21796 Nov 26 21:24 stderr.txt
[2025-11-26 21:24:30] HITS file was successfully produced:
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas 929804354 Nov 26 21:21 shared/HITS.pool.root.1
[2025-11-26 21:24:30]  *** Contents of shared directory: ***
[2025-11-26 21:24:30] total 1321244
[2025-11-26 21:24:30] -rw-r--r--. 2 boincer umatlas 409914941 Nov 26 00:02 ATLAS.root_0
[2025-11-26 21:24:30] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:02 input.tar.gz
[2025-11-26 21:24:30] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas 929804354 Nov 26 21:21 HITS.pool.root.1
[2025-11-26 21:24:30] -rw-------. 1 boincer umatlas  12615680 Nov 26 21:24 result.tar.gz
21:24:31 (2832814): run_atlas exited; CPU time 244877.487541
21:24:31 (2832814): called boinc_finish(0)

</stderr_txt>
]]>

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