Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:31:03 (3409563): wrapper (7.7.26015): starting
23:31:03 (3409563): wrapper: running run_atlas (--nthreads 8)
[2025-11-25 23:31:03] Arguments: --nthreads 8
[2025-11-25 23:31:03] Threads: 8
[2025-11-25 23:31:03] Checking for CVMFS
[2025-11-25 23:31:04] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:31:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:31:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:31:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:31:05] 2.13.3.0 11836 28093 347368 153309 1 353 28367372 32935936 34203 16776704 0 120230780 99.536 134996487 35755 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 23:31:05] CVMFS is ok
[2025-11-25 23:31:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:31:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:31:05] Further information can be found at the LHC@home message board.
[2025-11-25 23:31:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:31:05] Checking for apptainer binary...
[2025-11-25 23:31:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:31:05] Running /usr/bin/apptainer --version
[2025-11-25 23:31:05] apptainer version 1.4.4-1.el9
[2025-11-25 23:31:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:31:06] c6-2-11-1.aglt2.org
[2025-11-25 23:31:06] apptainer works
[2025-11-25 23:31:06] Set ATHENA_PROC_NUMBER=8
[2025-11-25 23:31:06] Set ATHENA_CORE_NUMBER=8
[2025-11-25 23:31:06] Starting ATLAS job with PandaID=6897864777
[2025-11-25 23:31:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 16:35:19]  *** The last 200 lines of the pilot log: ***
[2025-11-26 16:35:19] 2025-11-26 21:34:19,938 | INFO     | monitor loop #2757: job 0:6897864777 is in state 'finished'
[2025-11-26 16:35:19] 2025-11-26 21:34:19,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 16:35:19] 2025-11-26 21:34:21,382 | INFO     | time since job start (61333s) is within the limit (172800.0s)
[2025-11-26 16:35:19] 2025-11-26 21:34:22,143 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 16:35:19] 2025-11-26 21:34:22,155 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2705.2104791666666
[2025-11-26 16:35:19] 2025-11-26 21:34:22,172 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897864777/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 16:35:19] 2025-11-26 21:34:22,172 | INFO     | extracted standard info from prmon json
[2025-11-26 16:35:19] 2025-11-26 21:34:22,173 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 16:35:19] 2025-11-26 21:34:22,173 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 16:35:19] 2025-11-26 21:34:22,189 | INFO     | fitting pss+swap vs Time
[2025-11-26 16:35:19] 2025-11-26 21:34:22,192 | INFO     | sum of square deviations: 313762337909.89307
[2025-11-26 16:35:19] 2025-11-26 21:34:22,259 | INFO     | sum of deviations: 2181297894078.527
[2025-11-26 16:35:19] 2025-11-26 21:34:22,260 | INFO     | mean x: 1764162257.0458167
[2025-11-26 16:35:19] 2025-11-26 21:34:22,261 | INFO     | mean y: 2865806.5537848608
[2025-11-26 16:35:19] 2025-11-26 21:34:22,262 | INFO     | intersect: -12261714581.714436
[2025-11-26 16:35:19] 2025-11-26 21:34:22,263 | INFO     | chi2: 8.289569059592086
[2025-11-26 16:35:19] 2025-11-26 21:34:22,264 | INFO     | sum of square deviations: 309099732087.90985
[2025-11-26 16:35:19] 2025-11-26 21:34:22,286 | INFO     | sum of deviations: 2515388835627.582
[2025-11-26 16:35:19] 2025-11-26 21:34:22,286 | INFO     | mean x: 1764162104.5885885
[2025-11-26 16:35:19] 2025-11-26 21:34:22,286 | INFO     | mean y: 2876729.3493493493
[2025-11-26 16:35:19] 2025-11-26 21:34:22,286 | INFO     | intersect: -14353504727.679306
[2025-11-26 16:35:19] 2025-11-26 21:34:22,288 | INFO     | chi2: 5.1849198845061135
[2025-11-26 16:35:19] 2025-11-26 21:34:22,288 | INFO     | current chi2=5.1849198845061135 (change=37.45247977026621 %)
[2025-11-26 16:35:19] 2025-11-26 21:34:22,289 | INFO     | sum of square deviations: 304483592249.7351
[2025-11-26 16:35:19] 2025-11-26 21:34:22,309 | INFO     | sum of deviations: 2653662311131.69
[2025-11-26 16:35:19] 2025-11-26 21:34:22,309 | INFO     | mean x: 1764161952.1317906
[2025-11-26 16:35:19] 2025-11-26 21:34:22,309 | INFO     | mean y: 2881292.490945674
[2025-11-26 16:35:19] 2025-11-26 21:34:22,310 | INFO     | intersect: -15372298856.017416
[2025-11-26 16:35:19] 2025-11-26 21:34:22,311 | INFO     | chi2: 4.463668376288918
[2025-11-26 16:35:19] 2025-11-26 21:34:22,311 | INFO     | current chi2=4.463668376288918 (change=13.910562251356703 %)
[2025-11-26 16:35:19] 2025-11-26 21:34:22,311 | INFO     | right removable region: 993
[2025-11-26 16:35:19] 2025-11-26 21:34:22,312 | INFO     | sum of square deviations: 309094191976.99786
[2025-11-26 16:35:19] 2025-11-26 21:34:22,333 | INFO     | sum of deviations: 1805051899396.3997
[2025-11-26 16:35:19] 2025-11-26 21:34:22,333 | INFO     | mean x: 1764162409.5935936
[2025-11-26 16:35:19] 2025-11-26 21:34:22,333 | INFO     | mean y: 2878098.5625625625
[2025-11-26 16:35:19] 2025-11-26 21:34:22,333 | INFO     | intersect: -10299498299.754303
[2025-11-26 16:35:19] 2025-11-26 21:34:22,334 | INFO     | chi2: 4.641664739776161
[2025-11-26 16:35:19] 2025-11-26 21:34:22,334 | INFO     | current chi2=4.641664739776161 (change=44.00595849545201 %)
[2025-11-26 16:35:19] 2025-11-26 21:34:22,336 | INFO     | sum of square deviations: 304472876786.66547
[2025-11-26 16:35:19] 2025-11-26 21:34:22,355 | INFO     | sum of deviations: 1658700598847.2126
[2025-11-26 16:35:19] 2025-11-26 21:34:22,356 | INFO     | mean x: 1764162562.135815
[2025-11-26 16:35:19] 2025-11-26 21:34:22,356 | INFO     | mean y: 2882922.8873239434
[2025-11-26 16:35:19] 2025-11-26 21:34:22,356 | INFO     | intersect: -9607882834.513186
[2025-11-26 16:35:19] 2025-11-26 21:34:22,357 | INFO     | chi2: 4.0540463108016365
[2025-11-26 16:35:19] 2025-11-26 21:34:22,357 | INFO     | current chi2=4.0540463108016365 (change=12.659648249452449 %)
[2025-11-26 16:35:19] 2025-11-26 21:34:22,357 | INFO     | left removable region: 20
[2025-11-26 16:35:19] 2025-11-26 21:34:22,358 | INFO     | sum of square deviations: 285578281527.7076
[2025-11-26 16:35:19] 2025-11-26 21:34:22,377 | INFO     | sum of deviations: 1993505457403.7861
[2025-11-26 16:35:19] 2025-11-26 21:34:22,378 | INFO     | mean x: 1764162531.7965057
[2025-11-26 16:35:19] 2025-11-26 21:34:22,378 | INFO     | mean y: 2902923.8776978417
[2025-11-26 16:35:19] 2025-11-26 21:34:22,378 | INFO     | intersect: -12311995870.491575
[2025-11-26 16:35:19] 2025-11-26 21:34:22,379 | INFO     | chi2: 0.10811114411748002
[2025-11-26 16:35:19] 2025-11-26 21:34:22,379 | INFO     | current memory leak: 6.98 B/s (using 973 data points, chi2=0.11)
[2025-11-26 16:35:19] 2025-11-26 21:34:22,380 | INFO     | could have reported an average CPU frequency of 2667 MHz (37 samples)
[2025-11-26 16:35:19] 2025-11-26 21:34:22,381 | INFO     | ..............................
[2025-11-26 16:35:19] 2025-11-26 21:34:22,381 | INFO     | . Timing measurements:
[2025-11-26 16:35:19] 2025-11-26 21:34:22,381 | INFO     | . get job = 0 s
[2025-11-26 16:35:19] 2025-11-26 21:34:22,381 | INFO     | . initial setup = 5 s
[2025-11-26 16:35:19] 2025-11-26 21:34:22,381 | INFO     | . payload setup = 39 s
[2025-11-26 16:35:19] 2025-11-26 21:34:22,381 | INFO     | . stage-in = 0 s
[2025-11-26 16:35:19] 2025-11-26 21:34:22,381 | INFO     | . payload execution = 61211 s
[2025-11-26 16:35:19] 2025-11-26 21:34:22,381 | INFO     | . stage-out = 7 s
[2025-11-26 16:35:19] 2025-11-26 21:34:22,381 | INFO     | . log creation = 1 s
[2025-11-26 16:35:19] 2025-11-26 21:34:22,381 | INFO     | ..............................
[2025-11-26 16:35:19] 2025-11-26 21:34:22,801 | INFO     | 
[2025-11-26 16:35:19] 2025-11-26 21:34:22,802 | INFO     | job summary report
[2025-11-26 16:35:19] 2025-11-26 21:34:22,802 | INFO     | --------------------------------------------------
[2025-11-26 16:35:19] 2025-11-26 21:34:22,802 | INFO     | PanDA job id: 6897864777
[2025-11-26 16:35:19] 2025-11-26 21:34:22,803 | INFO     | task id: 47556161
[2025-11-26 16:35:19] 2025-11-26 21:34:22,803 | INFO     | errors: (none)
[2025-11-26 16:35:19] 2025-11-26 21:34:22,803 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 16:35:19] 2025-11-26 21:34:22,803 | INFO     | pilot state: finished 
[2025-11-26 16:35:19] 2025-11-26 21:34:22,803 | INFO     | transexitcode: 0
[2025-11-26 16:35:19] 2025-11-26 21:34:22,803 | INFO     | exeerrorcode: 0
[2025-11-26 16:35:19] 2025-11-26 21:34:22,803 | INFO     | exeerrordiag: 
[2025-11-26 16:35:19] 2025-11-26 21:34:22,803 | INFO     | exitcode: 0
[2025-11-26 16:35:19] 2025-11-26 21:34:22,803 | INFO     | exitmsg: OK
[2025-11-26 16:35:19] 2025-11-26 21:34:22,803 | INFO     | cpuconsumptiontime: 267146 s
[2025-11-26 16:35:19] 2025-11-26 21:34:22,803 | INFO     | nevents: 1000
[2025-11-26 16:35:19] 2025-11-26 21:34:22,804 | INFO     | neventsw: 0
[2025-11-26 16:35:19] 2025-11-26 21:34:22,804 | INFO     | pid: 3445801
[2025-11-26 16:35:19] 2025-11-26 21:34:22,804 | INFO     | pgrp: 3445801
[2025-11-26 16:35:19] 2025-11-26 21:34:22,804 | INFO     | corecount: 8
[2025-11-26 16:35:19] 2025-11-26 21:34:22,804 | INFO     | event service: False
[2025-11-26 16:35:19] 2025-11-26 21:34:22,804 | INFO     | sizes: {0: 2284094, 1: 2284122, 2: 2284293, 3: 2284321, 14: 2284349, 26: 2284377, 32: 2284795, 37: 2284823, 61253: 2336202, 61261: 2345196, 61262: 2345252, 61271: 
[2025-11-26 16:35:19] 2025-11-26 21:34:22,804 | INFO     | --------------------------------------------------
[2025-11-26 16:35:19] 2025-11-26 21:34:22,804 | INFO     | 
[2025-11-26 16:35:19] 2025-11-26 21:34:22,804 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-26 16:35:19] 2025-11-26 21:34:22,840 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,840 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,840 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,841 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,842 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,842 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 16:35:19] 2025-11-26 21:34:22,842 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,842 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 16:35:19] 2025-11-26 21:34:22,842 | INFO     | job 6897864777 has completed (purged errors)
[2025-11-26 16:35:19] 2025-11-26 21:34:22,842 | INFO     | overall cleanup function is called
[2025-11-26 16:35:19] 2025-11-26 21:34:23,859 | INFO     | --- collectZombieJob: --- 10, [3445801]
[2025-11-26 16:35:19] 2025-11-26 21:34:23,859 | INFO     | zombie collector waiting for pid 3445801
[2025-11-26 16:35:19] 2025-11-26 21:34:23,859 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 16:35:19] 2025-11-26 21:34:23,859 | INFO     | collected zombie processes
[2025-11-26 16:35:19] 2025-11-26 21:34:23,860 | INFO     | will attempt to kill all subprocesses of pid=3445801
[2025-11-26 16:35:19] 2025-11-26 21:34:25,090 | INFO     | process IDs to be killed: [3445801] (in reverse order)
[2025-11-26 16:35:19] 2025-11-26 21:34:25,280 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 16:35:19] 2025-11-26 21:34:25,280 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 16:35:19] 2025-11-26 21:34:25,315 | INFO     | did not find any defunct processes belonging to 3445801
[2025-11-26 16:35:19] 2025-11-26 21:34:25,343 | INFO     | did not find any defunct processes belonging to 3445801
[2025-11-26 16:35:19] 2025-11-26 21:34:25,348 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 16:35:19] 2025-11-26 21:34:25,348 | INFO     | ready for new job
[2025-11-26 16:35:19] 2025-11-26 21:34:25,348 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 16:35:19] 2025-11-26 21:34:25,357 | INFO     | ***************************************
[2025-11-26 16:35:19] 2025-11-26 21:34:25,357 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 16:35:19] 2025-11-26 21:34:25,357 | INFO     | ***************************************
[2025-11-26 16:35:19] 2025-11-26 21:34:25,357 | INFO     | 
[2025-11-26 16:35:19] 2025-11-26 21:34:25,367 | INFO     | architecture information:
[2025-11-26 16:35:19] 2025-11-26 21:34:25,367 | INFO     | executing command: cat /etc/os-release
[2025-11-26 16:35:19] 2025-11-26 21:34:25,422 | INFO     | cat /etc/os-release:
[2025-11-26 16:35:19] NAME="CentOS Linux"
[2025-11-26 16:35:19] VERSION="7 (Core)"
[2025-11-26 16:35:19] ID="centos"
[2025-11-26 16:35:19] ID_LIKE="rhel fedora"
[2025-11-26 16:35:19] VERSION_ID="7"
[2025-11-26 16:35:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 16:35:19] ANSI_COLOR="0;31"
[2025-11-26 16:35:19] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 16:35:19] HOME_URL="https://www.centos.org/"
[2025-11-26 16:35:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 16:35:19] 
[2025-11-26 16:35:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 16:35:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 16:35:19] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 16:35:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 16:35:19] 
[2025-11-26 16:35:19] 2025-11-26 21:34:25,423 | INFO     | ***************************************
[2025-11-26 16:35:19] 2025-11-26 21:34:25,925 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-26 16:35:19] 2025-11-26 21:34:25,947 | INFO     | sufficient remaining disk space (85458944000 B)
[2025-11-26 16:35:19] 2025-11-26 21:34:25,948 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 16:35:19] 2025-11-26 21:34:25,948 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 16:35:19] 2025-11-26 21:34:25,948 | INFO     | update_server=False
[2025-11-26 16:35:19] 2025-11-26 21:34:25,948 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 16:35:19] 2025-11-26 21:34:25,948 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 16:35:19] 2025-11-26 21:34:25,979 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:35:19] 2025-11-26 21:34:25,979 | INFO     | aborting loop
[2025-11-26 16:35:19] 2025-11-26 21:34:26,029 | INFO     | all job control threads have been joined
[2025-11-26 16:35:19] 2025-11-26 21:34:26,596 | INFO     | all data control threads have been joined
[2025-11-26 16:35:19] 2025-11-26 21:34:26,954 | INFO     | [job] retrieve thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:26,973 | INFO     | all payload control threads have been joined
[2025-11-26 16:35:19] 2025-11-26 21:34:26,985 | INFO     | [job] job monitor thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:27,034 | INFO     | [job] control thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:27,314 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:27,319 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:27,419 | INFO     | [payload] validate_post thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:27,502 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 16:35:19] 2025-11-26 21:34:27,602 | INFO     | [data] control thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:27,819 | INFO     | [data] copytool_in thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:27,820 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:27,842 | INFO     | [job] validate thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:27,862 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:27,889 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 16:35:19] 2025-11-26 21:34:27,955 | INFO     | [data] copytool_out thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:27,980 | INFO     | [payload] control thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:28,421 | INFO     | [payload] failed_post thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:28,508 | INFO     | [job] queue monitor thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:31,906 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 16:35:19] 2025-11-26 21:34:56,610 | INFO     | PID=3422531 has CPU usage=5.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 16:35:19] 2025-11-26 21:34:56,610 | INFO     | .. there are 55 such processes running
[2025-11-26 16:35:19] 2025-11-26 21:34:56,611 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 16:35:19] 2025-11-26 21:34:56,611 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 16:35:19] 2025-11-26 21:34:56,611 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 16:35:19] 2025-11-26 21:35:11,890 | INFO     | [monitor] cgroup control has ended
[2025-11-26 16:35:19] 2025-11-26 21:35:12,377 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140198218241856)>', '<ExcThread(monitor, started 140197429753600)>']
[2025-11-26 16:35:19] 2025-11-26 21:35:12,780 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 16:35:19] 2025-11-26 21:35:12,780 | INFO     | [monitor] control thread has ended
[2025-11-26 16:35:19] 2025-11-26 21:35:17,403 | INFO     | all workflow threads have been joined
[2025-11-26 16:35:19] 2025-11-26 21:35:17,403 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 16:35:19] 2025-11-26 21:35:17,404 | INFO     | traces error code: 0
[2025-11-26 16:35:19] 2025-11-26 21:35:17,404 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 16:35:19] 2025-11-26 21:35:18,886 [wrapper] ==== pilot stdout END ====
[2025-11-26 16:35:19] 2025-11-26 21:35:18,903 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 16:35:19] 2025-11-26 21:35:18,911 [wrapper] pilotpid: 3422531
[2025-11-26 16:35:19] 2025-11-26 21:35:18,914 [wrapper] Pilot exit status: 0
[2025-11-26 16:35:19] 2025-11-26 21:35:18,927 [wrapper] pandaids: 6897864777
[2025-11-26 16:35:19] 2025-11-26 21:35:19,038 [wrapper] cleanup supervisor_pilot 3909413 3422532
[2025-11-26 16:35:19] 2025-11-26 21:35:19,040 [wrapper] Test setup, not cleaning
[2025-11-26 16:35:19] 2025-11-26 21:35:19,045 [wrapper] apfmon messages muted
[2025-11-26 16:35:19] 2025-11-26 21:35:19,047 [wrapper] ==== wrapper stdout END ====
[2025-11-26 16:35:19] 2025-11-26 21:35:19,054 [wrapper] ==== wrapper stderr END ====
[2025-11-26 16:35:19]  *** Error codes and diagnostics ***
[2025-11-26 16:35:19]     "exeErrorCode": 0,
[2025-11-26 16:35:19]     "exeErrorDiag": "",
[2025-11-26 16:35:19]     "pilotErrorCode": 0,
[2025-11-26 16:35:19]     "pilotErrorDiag": "",
[2025-11-26 16:35:19]  *** Listing of results directory ***
[2025-11-26 16:35:19] total 1337252
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 16:35:19] -rwx------. 1 boincer umatlas     36292 Nov 25 12:02 runpilot2-wrapper.sh
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas       100 Nov 25 23:31 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 16:35:19] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 23:31 run_atlas
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas       105 Nov 25 23:31 job.xml
[2025-11-26 16:35:19] -rw-r--r--. 2 boincer umatlas 410826014 Nov 25 23:31 EVNT.47483658._002343.pool.root.1
[2025-11-26 16:35:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 23:31 start_atlas.sh
[2025-11-26 16:35:19] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 23:31 shared
[2025-11-26 16:35:19] -rw-r--r--. 2 boincer umatlas    590113 Nov 25 23:31 input.tar.gz
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas         0 Nov 25 23:31 boinc_lockfile
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 23:31 pandaJob.out
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas        57 Nov 25 23:31 setup.sh.local
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas    991877 Nov 25 23:32 agis_schedconf.cvmfs.json
[2025-11-26 16:35:19] drwx------. 5 boincer umatlas      4096 Nov 25 23:32 pilot3
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas       533 Nov 26 16:24 boinc_task_state.xml
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas      6878 Nov 26 16:30 init_data.xml
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas 937592001 Nov 26 16:33 HITS.47556161._003258.pool.root.1
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas      1058 Nov 26 16:34 memory_monitor_summary.json
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas   1516240 Nov 26 16:34 agis_ddmendpoints.agis.ALL.json
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas        95 Nov 26 16:34 pilot_heartbeat.json
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas   2044091 Nov 26 16:34 log.47556161._003258.job.log.tgz.1
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas      8623 Nov 26 16:34 heartbeat.json
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas        29 Nov 26 16:35 wrapper_checkpoint.txt
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 16:35 boinc_mmap_file
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas      4824 Nov 26 16:35 pilotlog.txt
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas   6456708 Nov 26 16:35 log.47556161._003258.job.log.1
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas       353 Nov 26 16:35 output.list
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas       620 Nov 26 16:35 runtime_log
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas   8519680 Nov 26 16:35 result.tar.gz
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas      9348 Nov 26 16:35 runtime_log.err
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas       661 Nov 26 16:35 dgdLDmlbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwjJKDmTcqAFo.diag
[2025-11-26 16:35:19] -rw-r--r--. 1 boincer umatlas     21395 Nov 26 16:35 stderr.txt
[2025-11-26 16:35:19] HITS file was successfully produced:
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas 937592001 Nov 26 16:33 shared/HITS.pool.root.1
[2025-11-26 16:35:19]  *** Contents of shared directory: ***
[2025-11-26 16:35:19] total 1325744
[2025-11-26 16:35:19] -rw-r--r--. 2 boincer umatlas 410826014 Nov 25 23:31 ATLAS.root_0
[2025-11-26 16:35:19] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 23:31 start_atlas.sh
[2025-11-26 16:35:19] -rw-r--r--. 2 boincer umatlas    590113 Nov 25 23:31 input.tar.gz
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas 937592001 Nov 26 16:33 HITS.pool.root.1
[2025-11-26 16:35:19] -rw-------. 1 boincer umatlas   8519680 Nov 26 16:35 result.tar.gz
16:35:20 (3409563): run_atlas exited; CPU time 269482.937805
16:35:20 (3409563): called boinc_finish(0)

</stderr_txt>
]]>

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