Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:57:18 (167923): wrapper (7.7.26015): starting
20:57:18 (167923): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 20:57:18] Arguments: --nthreads 12
[2025-11-25 20:57:18] Threads: 12
[2025-11-25 20:57:18] Checking for CVMFS
[2025-11-25 20:57:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:57:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:57:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:57:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:57:21] 2.11.5.0 4091557 27647 214532 153309 2 315 43803698 45568000 36971 130560 0 209434489 99.756 145329015 21769 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 20:57:21] CVMFS is ok
[2025-11-25 20:57:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:57:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:57:21] Further information can be found at the LHC@home message board.
[2025-11-25 20:57:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:57:21] Checking for apptainer binary...
[2025-11-25 20:57:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:57:21] Running /usr/bin/apptainer --version
[2025-11-25 20:57:21] apptainer version 1.4.1-1.el9
[2025-11-25 20:57:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:57:22] wns0073.triumf.lcg
[2025-11-25 20:57:22] apptainer works
[2025-11-25 20:57:22] Set ATHENA_PROC_NUMBER=12
[2025-11-25 20:57:22] Set ATHENA_CORE_NUMBER=12
[2025-11-25 20:57:23] Starting ATLAS job with PandaID=6897864766
[2025-11-25 20:57:23] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 21:09:31]  *** The last 200 lines of the pilot log: ***
[2025-11-25 21:09:31] 2025-11-26 05:08:35,105 | WARNING  | wrong length of table data, x=[1764133248.0, 1764133309.0, 1764133370.0, 1764133431.0, 1764133492.0, 1764133553.0], y=[579.0, 397500.0, 669667.0, 926678.0, 376929.
[2025-11-25 21:09:31] 2025-11-26 05:08:35,116 | INFO     | could have reported an average CPU frequency of 1486 MHz (4 samples)
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | ..............................
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . Timing measurements:
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . get job = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . initial setup = 5 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . payload setup = 40 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . stage-in = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . payload execution = 356 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . stage-out = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . log creation = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | ..............................
[2025-11-25 21:09:31] 2025-11-26 05:08:35,118 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 21:09:31] 2025-11-26 05:08:35,118 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897864766/pilotlog.txt
[2025-11-25 21:09:31] 2025-11-26 05:08:35,253 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 21:09:31] - Log from pilotlog.txt -
[2025-11-25 21:09:31] 2025-11-26 05:08:35,103 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897864766/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:09:31] 2025-11-26 05:08:35,104 | INFO     | extracted standard info from prmon json
[2025-11-25 21:09:31] 2025-11-26 05:08:35,104 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:09:31] 2025-11-26 05:08:35,104 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:09:31] 2025-11-26 05:08:35,105 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 21:09:31] 2025-11-26 05:08:35,105 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 21:09:31] 2025-11-26 05:08:35,105 | WARNING  | wrong length of table data, x=[1764133248.0, 1764133309.0, 1764133370.0, 1764133431.0, 1764133492.0, 1764133553.0], y=[579.0, 397500.0, 669667.0, 926678.0, 376929.
[2025-11-25 21:09:31] 2025-11-26 05:08:35,116 | INFO     | could have reported an average CPU frequency of 1486 MHz (4 samples)
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | ..............................
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . Timing measurements:
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . get job = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . initial setup = 5 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . payload setup = 40 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . stage-in = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . payload execution = 356 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . stage-out = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . log creation = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | ..............................
[2025-11-25 21:09:31] 2025-11-26 05:08:35,118 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 21:09:31] 2025-11-26 05:08:35,118 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897864766/pilotlog.txt
[2025-11-25 21:09:31] 2025-11-26 05:08:35,254 | WARNING  | 
[2025-11-25 21:09:31] [begin log extracts]
[2025-11-25 21:09:31] - Log from pilotlog.txt -
[2025-11-25 21:09:31] 2025-11-26 05:08:35,103 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897864766/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 21:09:31] 2025-11-26 05:08:35,104 | INFO     | extracted standard info from prmon json
[2025-11-25 21:09:31] 2025-11-26 05:08:35,104 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 21:09:31] 2025-11-26 05:08:35,104 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 21:09:31] 2025-11-26 05:08:35,105 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 21:09:31] 2025-11-26 05:08:35,105 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 21:09:31] 2025-11-26 05:08:35,105 | WARNING  | wrong length of table data, x=[1764133248.0, 1764133309.0, 1764133370.0, 1764133431.0, 1764133492.0, 1764133553.0], y=[579.0, 397500.0, 669667.0, 926678.0, 376929.
[2025-11-25 21:09:31] 2025-11-26 05:08:35,116 | INFO     | could have reported an average CPU frequency of 1486 MHz (4 samples)
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | ..............................
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . Timing measurements:
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . get job = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . initial setup = 5 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . payload setup = 40 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . stage-in = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . payload execution = 356 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . stage-out = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | . log creation = 0 s
[2025-11-25 21:09:31] 2025-11-26 05:08:35,117 | INFO     | ..............................
[2025-11-25 21:09:31] 2025-11-26 05:08:35,118 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 21:09:31] 2025-11-26 05:08:35,118 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897864766/pilotlog.txt
[2025-11-25 21:09:31] [end log extracts]
[2025-11-25 21:09:31] 2025-11-26 05:08:35,254 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 21:09:31] 2025-11-26 05:08:35,255 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 21:09:31] 2025-11-26 05:08:35,642 | INFO     | time since job start (611s) is within the limit (172800.0s)
[2025-11-25 21:09:31] 2025-11-26 05:08:36,225 | INFO     | 
[2025-11-25 21:09:31] 2025-11-26 05:08:36,225 | INFO     | job summary report
[2025-11-25 21:09:31] 2025-11-26 05:08:36,225 | INFO     | --------------------------------------------------
[2025-11-25 21:09:31] 2025-11-26 05:08:36,225 | INFO     | PanDA job id: 6897864766
[2025-11-25 21:09:31] 2025-11-26 05:08:36,225 | INFO     | task id: 47556161
[2025-11-25 21:09:31] 2025-11-26 05:08:36,226 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 21:05:57,603 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 21:09:31] 2025-11-26 05:08:36,226 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 21:09:31] 2025-11-26 05:08:36,226 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 21:09:31] 2025-11-26 05:08:36,226 | INFO     | pilot state: failed 
[2025-11-25 21:09:31] 2025-11-26 05:08:36,226 | INFO     | transexitcode: 65
[2025-11-25 21:09:31] 2025-11-26 05:08:36,226 | INFO     | exeerrorcode: 65
[2025-11-25 21:09:31] 2025-11-26 05:08:36,226 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 21:09:31] 2025-11-26 05:08:36,226 | INFO     | exitcode: 65
[2025-11-25 21:09:31] 2025-11-26 05:08:36,226 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 21:09:31] 2025-11-26 05:08:36,226 | INFO     | cpuconsumptiontime: 75 s
[2025-11-25 21:09:31] 2025-11-26 05:08:36,226 | INFO     | nevents: 0
[2025-11-25 21:09:31] 2025-11-26 05:08:36,227 | INFO     | neventsw: 0
[2025-11-25 21:09:31] 2025-11-26 05:08:36,227 | INFO     | pid: 179162
[2025-11-25 21:09:31] 2025-11-26 05:08:36,227 | INFO     | pgrp: 179162
[2025-11-25 21:09:31] 2025-11-26 05:08:36,227 | INFO     | corecount: 12
[2025-11-25 21:09:31] 2025-11-26 05:08:36,227 | INFO     | event service: False
[2025-11-25 21:09:31] 2025-11-26 05:08:36,227 | INFO     | sizes: {0: 2284035, 1: 2284119, 2: 2284290, 3: 2284318, 13: 2284346, 25: 2284402, 32: 2284820, 35: 2284848, 402: 2310356, 403: 2314646, 404: 2314702, 551: 2315236}
[2025-11-25 21:09:31] 2025-11-26 05:08:36,227 | INFO     | --------------------------------------------------
[2025-11-25 21:09:31] 2025-11-26 05:08:36,227 | INFO     | 
[2025-11-25 21:09:31] 2025-11-26 05:08:36,227 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 21:09:31] 2025-11-26 05:08:36,410 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,410 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,410 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,410 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,410 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,410 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,410 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,410 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,411 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 21:09:31] 2025-11-26 05:08:36,412 | INFO     | job 6897864766 has completed (purged errors)
[2025-11-25 21:09:31] 2025-11-26 05:08:36,412 | INFO     | overall cleanup function is called
[2025-11-25 21:09:31] 2025-11-26 05:08:37,446 | INFO     | --- collectZombieJob: --- 10, [179162]
[2025-11-25 21:09:31] 2025-11-26 05:08:37,446 | INFO     | zombie collector waiting for pid 179162
[2025-11-25 21:09:31] 2025-11-26 05:08:37,446 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 21:09:31] 2025-11-26 05:08:37,446 | INFO     | collected zombie processes
[2025-11-25 21:09:31] 2025-11-26 05:08:37,446 | INFO     | will attempt to kill all subprocesses of pid=179162
[2025-11-25 21:09:31] 2025-11-26 05:08:38,554 | INFO     | process IDs to be killed: [179162] (in reverse order)
[2025-11-25 21:09:31] 2025-11-26 05:08:38,698 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 21:09:31] 2025-11-26 05:08:38,698 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 21:09:31] 2025-11-26 05:08:38,751 | INFO     | did not find any defunct processes belonging to 179162
[2025-11-25 21:09:31] 2025-11-26 05:08:38,783 | INFO     | did not find any defunct processes belonging to 179162
[2025-11-25 21:09:31] 2025-11-26 05:08:38,790 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 21:09:31] 2025-11-26 05:08:38,790 | INFO     | ready for new job
[2025-11-25 21:09:31] 2025-11-26 05:08:38,790 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 21:09:31] 2025-11-26 05:08:38,792 | INFO     | ***************************************
[2025-11-25 21:09:31] 2025-11-26 05:08:38,792 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 21:09:31] 2025-11-26 05:08:38,792 | INFO     | ***************************************
[2025-11-25 21:09:31] 2025-11-26 05:08:38,792 | INFO     | 
[2025-11-25 21:09:31] 2025-11-26 05:08:38,808 | INFO     | architecture information:
[2025-11-25 21:09:31] 2025-11-26 05:08:38,809 | INFO     | executing command: cat /etc/os-release
[2025-11-25 21:09:31] 2025-11-26 05:08:38,873 | INFO     | cat /etc/os-release:
[2025-11-25 21:09:31] NAME="CentOS Linux"
[2025-11-25 21:09:31] VERSION="7 (Core)"
[2025-11-25 21:09:31] ID="centos"
[2025-11-25 21:09:31] ID_LIKE="rhel fedora"
[2025-11-25 21:09:31] VERSION_ID="7"
[2025-11-25 21:09:31] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 21:09:31] ANSI_COLOR="0;31"
[2025-11-25 21:09:31] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 21:09:31] HOME_URL="https://www.centos.org/"
[2025-11-25 21:09:31] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 21:09:31] 
[2025-11-25 21:09:31] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 21:09:31] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 21:09:31] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 21:09:31] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 21:09:31] 
[2025-11-25 21:09:31] 2025-11-26 05:08:38,874 | INFO     | ***************************************
[2025-11-25 21:09:31] 2025-11-26 05:08:39,377 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 21:09:31] 2025-11-26 05:08:39,469 | INFO     | sufficient remaining disk space (909109100544 B)
[2025-11-25 21:09:31] 2025-11-26 05:08:39,470 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 21:09:31] 2025-11-26 05:08:39,470 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 21:09:31] 2025-11-26 05:08:39,470 | INFO     | update_server=False
[2025-11-25 21:09:31] 2025-11-26 05:08:39,470 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 21:09:31] 2025-11-26 05:08:39,471 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 21:09:31] 2025-11-26 05:08:39,471 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 21:09:31] 2025-11-26 05:08:39,471 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:09:31] 2025-11-26 05:08:39,472 | INFO     | aborting loop
[2025-11-25 21:09:31] 2025-11-26 05:08:39,600 | INFO     | all data control threads have been joined
[2025-11-25 21:09:31] 2025-11-26 05:08:39,701 | INFO     | all payload control threads have been joined
[2025-11-25 21:09:31] 2025-11-26 05:08:39,741 | INFO     | all job control threads have been joined
[2025-11-25 21:09:31] 2025-11-26 05:08:40,476 | INFO     | [job] retrieve thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:40,487 | INFO     | [job] job monitor thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:40,583 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:40,606 | INFO     | [data] control thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:40,707 | INFO     | [payload] control thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:40,708 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:40,747 | INFO     | [job] control thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:40,771 | INFO     | [payload] validate_post thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:40,831 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:40,941 | INFO     | [payload] failed_post thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:41,199 | INFO     | [job] validate thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:41,239 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 21:09:31] 2025-11-26 05:08:41,415 | INFO     | [data] copytool_in thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:41,486 | INFO     | [data] copytool_out thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:41,529 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:42,245 | INFO     | [job] queue monitor thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:08:43,480 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 21:09:31] 2025-11-26 05:09:09,719 | INFO     | PID=171944 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 21:09:31] 2025-11-26 05:09:09,719 | INFO     | .. there are 42 such processes running
[2025-11-25 21:09:31] 2025-11-26 05:09:09,720 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 21:09:31] 2025-11-26 05:09:09,720 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 21:09:31] 2025-11-26 05:09:09,720 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 21:09:31] 2025-11-26 05:09:24,482 | INFO     | [monitor] cgroup control has ended
[2025-11-25 21:09:31] 2025-11-26 05:09:24,603 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140365321717568)>', '<ExcThread(monitor, started 140364488894208)>']
[2025-11-25 21:09:31] 2025-11-26 05:09:24,845 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 21:09:31] 2025-11-26 05:09:24,845 | INFO     | [monitor] control thread has ended
[2025-11-25 21:09:31] 2025-11-26 05:09:29,629 | INFO     | all workflow threads have been joined
[2025-11-25 21:09:31] 2025-11-26 05:09:29,629 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 21:09:31] 2025-11-26 05:09:29,630 | INFO     | traces error code: 0
[2025-11-25 21:09:31] 2025-11-26 05:09:29,630 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 21:09:31] 2025-11-26 05:09:29,838 [wrapper] ==== pilot stdout END ====
[2025-11-25 21:09:31] 2025-11-26 05:09:29,863 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 21:09:31] 2025-11-26 05:09:29,866 [wrapper] pilotpid: 171944
[2025-11-25 21:09:31] 2025-11-26 05:09:29,876 [wrapper] Pilot exit status: 0
[2025-11-25 21:09:31] 2025-11-26 05:09:30,019 [wrapper] pandaids: 6897864766
[2025-11-25 21:09:31] 2025-11-26 05:09:30,102 [wrapper] cleanup supervisor_pilot  171950 171945
[2025-11-25 21:09:31] 2025-11-26 05:09:30,106 [wrapper] Test setup, not cleaning
[2025-11-25 21:09:31] 2025-11-26 05:09:30,109 [wrapper] apfmon messages muted
[2025-11-25 21:09:31] 2025-11-26 05:09:30,111 [wrapper] ==== wrapper stdout END ====
[2025-11-25 21:09:31] 2025-11-26 05:09:30,125 [wrapper] ==== wrapper stderr END ====
[2025-11-25 21:09:31]  *** Error codes and diagnostics ***
[2025-11-25 21:09:31]     "exeErrorCode": 65,
[2025-11-25 21:09:31]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 21:09:31]     "pilotErrorCode": 1305,
[2025-11-25 21:09:31]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 21:09:31]  *** Listing of results directory ***
[2025-11-25 21:09:31] total 405436
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc    576529 Nov 25 08:48 pilot3.tar.gz
[2025-11-25 21:09:31] -rwx------. 1 boinc boinc     36292 Nov 25 09:02 runpilot2-wrapper.sh
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc      5112 Nov 25 09:02 queuedata.json
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc       100 Nov 25 20:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 21:09:31] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 20:57 run_atlas
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc       105 Nov 25 20:57 job.xml
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc      6593 Nov 25 20:57 init_data.xml
[2025-11-25 21:09:31] -rw-r--r--. 2 boinc boinc 410867847 Nov 25 20:57 EVNT.47483658._002342.pool.root.1
[2025-11-25 21:09:31] -rw-r--r--. 2 boinc boinc     15847 Nov 25 20:57 start_atlas.sh
[2025-11-25 21:09:31] drwxrwx--x. 2 boinc boinc      4096 Nov 25 20:57 shared
[2025-11-25 21:09:31] -rw-r--r--. 2 boinc boinc    590111 Nov 25 20:57 input.tar.gz
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc         0 Nov 25 20:57 boinc_lockfile
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc      2786 Nov 25 20:57 pandaJob.out
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc    991877 Nov 25 20:58 agis_schedconf.cvmfs.json
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc   1516240 Nov 25 20:58 agis_ddmendpoints.agis.ALL.json
[2025-11-25 21:09:31] drwx------. 5 boinc boinc      4096 Nov 25 20:58 pilot3
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc       525 Nov 25 21:05 boinc_task_state.xml
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc      1004 Nov 25 21:06 memory_monitor_summary.json
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc     52815 Nov 25 21:06 log.47556161._003247.job.log.tgz.1
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc        95 Nov 25 21:08 pilot_heartbeat.json
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc     10342 Nov 25 21:08 heartbeat.json
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc      4821 Nov 25 21:09 pilotlog.txt
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc    137891 Nov 25 21:09 log.47556161._003247.job.log.1
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc      8192 Nov 25 21:09 boinc_mmap_file
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc       186 Nov 25 21:09 output.list
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc       620 Nov 25 21:09 runtime_log
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc    215040 Nov 25 21:09 result.tar.gz
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc      8636 Nov 25 21:09 runtime_log.err
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc       645 Nov 25 21:09 hePLDmlbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmnjJKDmTXIYWo.diag
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc        23 Nov 25 21:09 wrapper_checkpoint.txt
[2025-11-25 21:09:31] -rw-r--r--. 1 boinc boinc     22705 Nov 25 21:09 stderr.txt
[2025-11-25 21:09:31] No HITS result produced
[2025-11-25 21:09:31]  *** Contents of shared directory: ***
[2025-11-25 21:09:31] total 402052
[2025-11-25 21:09:31] -rw-r--r--. 2 boinc boinc 410867847 Nov 25 20:57 ATLAS.root_0
[2025-11-25 21:09:31] -rw-r--r--. 2 boinc boinc     15847 Nov 25 20:57 start_atlas.sh
[2025-11-25 21:09:31] -rw-r--r--. 2 boinc boinc    590111 Nov 25 20:57 input.tar.gz
[2025-11-25 21:09:31] -rw-------. 1 boinc boinc    215040 Nov 25 21:09 result.tar.gz
21:09:33 (167923): run_atlas exited; CPU time 91.769211
21:09:33 (167923): called boinc_finish(0)

</stderr_txt>
]]>

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