Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:03 (1196336): wrapper (7.7.26015): starting
00:02:03 (1196336): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:02:03] Arguments: --nthreads 9
[2025-11-26 00:02:03] Threads: 9
[2025-11-26 00:02:03] Checking for CVMFS
[2025-11-26 00:02:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:02:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:02:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:02:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:02:05] 2.13.3.0 10079 27907 394444 153309 3 181 23434129 32935936 51809 16776704 0 306389414 99.795 156891957 29136 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:02:05] CVMFS is ok
[2025-11-26 00:02:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:02:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:02:05] Further information can be found at the LHC@home message board.
[2025-11-26 00:02:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:02:05] Checking for apptainer binary...
[2025-11-26 00:02:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:02:05] Running /usr/bin/apptainer --version
[2025-11-26 00:02:05] apptainer version 1.4.4-1.el9
[2025-11-26 00:02:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:02:06] lc-12-33.aglt2.org
[2025-11-26 00:02:06] apptainer works
[2025-11-26 00:02:06] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:02:06] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:02:06] Starting ATLAS job with PandaID=6897759738
[2025-11-26 00:02:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:27:23]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:27:23] 2025-11-27 00:26:16,369 | INFO     | time since job start (69786s) is within the limit (172800.0s)
[2025-11-26 19:27:23] 2025-11-27 00:26:18,121 | INFO     | monitor loop #3980: job 0:6897759738 is in state 'finished'
[2025-11-26 19:27:23] 2025-11-27 00:26:18,122 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:27:23] 2025-11-27 00:26:18,375 | INFO     | time since job start (69788s) is within the limit (172800.0s)
[2025-11-26 19:27:23] 2025-11-27 00:26:20,387 | INFO     | time since job start (69790s) is within the limit (172800.0s)
[2025-11-26 19:27:23] 2025-11-27 00:26:20,634 | INFO     | monitor loop #3981: job 0:6897759738 is in state 'finished'
[2025-11-26 19:27:23] 2025-11-27 00:26:20,635 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:27:23] 2025-11-27 00:26:22,417 | INFO     | time since job start (69792s) is within the limit (172800.0s)
[2025-11-26 19:27:23] 2025-11-27 00:26:23,142 | INFO     | monitor loop #3982: job 0:6897759738 is in state 'finished'
[2025-11-26 19:27:23] 2025-11-27 00:26:23,142 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:27:23] 2025-11-27 00:26:24,448 | INFO     | time since job start (69794s) is within the limit (172800.0s)
[2025-11-26 19:27:23] 2025-11-27 00:26:25,659 | INFO     | monitor loop #3983: job 0:6897759738 is in state 'finished'
[2025-11-26 19:27:23] 2025-11-27 00:26:25,660 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:27:23] 2025-11-27 00:26:26,466 | INFO     | time since job start (69796s) is within the limit (172800.0s)
[2025-11-26 19:27:23] 2025-11-27 00:26:27,729 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 19:27:23] 2025-11-27 00:26:27,735 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2805.4449583333335
[2025-11-26 19:27:23] 2025-11-27 00:26:27,789 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6897759738/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 19:27:23] 2025-11-27 00:26:27,790 | INFO     | extracted standard info from prmon json
[2025-11-26 19:27:23] 2025-11-27 00:26:27,790 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 19:27:23] 2025-11-27 00:26:27,790 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 19:27:23] 2025-11-27 00:26:27,843 | INFO     | fitting pss+swap vs Time
[2025-11-26 19:27:23] 2025-11-27 00:26:27,875 | INFO     | sum of square deviations: 461819100220.80365
[2025-11-26 19:27:23] 2025-11-27 00:26:28,034 | INFO     | sum of deviations: 2286124958316.5254
[2025-11-26 19:27:23] 2025-11-27 00:26:28,034 | INFO     | mean x: 1764168333.7723293
[2025-11-26 19:27:23] 2025-11-27 00:26:28,034 | INFO     | mean y: 2995075.6558669
[2025-11-26 19:27:23] 2025-11-27 00:26:28,035 | INFO     | intersect: -8730098156.261786
[2025-11-26 19:27:23] 2025-11-27 00:26:28,036 | INFO     | chi2: 17.765169748954964
[2025-11-26 19:27:23] 2025-11-27 00:26:28,042 | INFO     | sum of square deviations: 455780072000.17615
[2025-11-26 19:27:23] 2025-11-27 00:26:28,076 | INFO     | sum of deviations: 2684128221367.02
[2025-11-26 19:27:23] 2025-11-27 00:26:28,076 | INFO     | mean x: 1764168181.2779243
[2025-11-26 19:27:23] 2025-11-27 00:26:28,076 | INFO     | mean y: 3005124.196130167
[2025-11-26 19:27:23] 2025-11-27 00:26:28,076 | INFO     | intersect: -10386333711.583366
[2025-11-26 19:27:23] 2025-11-27 00:26:28,078 | INFO     | chi2: 14.549114203684592
[2025-11-26 19:27:23] 2025-11-27 00:26:28,078 | INFO     | current chi2=14.549114203684592 (change=18.103151226345904 %)
[2025-11-26 19:27:23] 2025-11-27 00:26:28,078 | INFO     | right removable region: 1136
[2025-11-26 19:27:23] 2025-11-27 00:26:28,079 | INFO     | sum of square deviations: 455779185670.17615
[2025-11-26 19:27:23] 2025-11-27 00:26:28,127 | INFO     | sum of deviations: 1809816041490.4585
[2025-11-26 19:27:23] 2025-11-27 00:26:28,128 | INFO     | mean x: 1764168486.2779243
[2025-11-26 19:27:23] 2025-11-27 00:26:28,128 | INFO     | mean y: 3007100.9384344765
[2025-11-26 19:27:23] 2025-11-27 00:26:28,128 | INFO     | intersect: -7002184287.218124
[2025-11-26 19:27:23] 2025-11-27 00:26:28,129 | INFO     | chi2: 13.626172055149706
[2025-11-26 19:27:23] 2025-11-27 00:26:28,130 | INFO     | current chi2=13.626172055149706 (change=23.298385280268626 %)
[2025-11-26 19:27:23] 2025-11-27 00:26:28,130 | INFO     | left removable region: 10
[2025-11-26 19:27:23] 2025-11-27 00:26:28,131 | INFO     | sum of square deviations: 442678263994.53656
[2025-11-26 19:27:23] 2025-11-27 00:26:28,195 | INFO     | monitor loop #3984: job 0:6897759738 is in state 'finished'
[2025-11-26 19:27:23] 2025-11-27 00:26:28,195 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-26 19:27:23] 2025-11-27 00:26:28,219 | INFO     | sum of deviations: 1916943780851.8782
[2025-11-26 19:27:23] 2025-11-27 00:26:28,219 | INFO     | mean x: 1764168455.7904086
[2025-11-26 19:27:23] 2025-11-27 00:26:28,220 | INFO     | mean y: 3028675.414742451
[2025-11-26 19:27:23] 2025-11-27 00:26:28,220 | INFO     | intersect: -7636406157.428605
[2025-11-26 19:27:23] 2025-11-27 00:26:28,221 | INFO     | chi2: 7.348426283469351
[2025-11-26 19:27:23] 2025-11-27 00:26:28,245 | INFO     | current memory leak: 4.33 B/s (using 1126 data points, chi2=7.35)
[2025-11-26 19:27:23] 2025-11-27 00:26:28,259 | INFO     | could have reported an average CPU frequency of 2752 MHz (41 samples)
[2025-11-26 19:27:23] 2025-11-27 00:26:28,259 | INFO     | ..............................
[2025-11-26 19:27:23] 2025-11-27 00:26:28,259 | INFO     | . Timing measurements:
[2025-11-26 19:27:23] 2025-11-27 00:26:28,259 | INFO     | . get job = 0 s
[2025-11-26 19:27:23] 2025-11-27 00:26:28,259 | INFO     | . initial setup = 5 s
[2025-11-26 19:27:23] 2025-11-27 00:26:28,259 | INFO     | . payload setup = 44 s
[2025-11-26 19:27:23] 2025-11-27 00:26:28,259 | INFO     | . stage-in = 0 s
[2025-11-26 19:27:23] 2025-11-27 00:26:28,259 | INFO     | . payload execution = 69648 s
[2025-11-26 19:27:23] 2025-11-27 00:26:28,259 | INFO     | . stage-out = 8 s
[2025-11-26 19:27:23] 2025-11-27 00:26:28,259 | INFO     | . log creation = 1 s
[2025-11-26 19:27:23] 2025-11-27 00:26:28,259 | INFO     | ..............................
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | 
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | job summary report
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | --------------------------------------------------
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | PanDA job id: 6897759738
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | task id: 47556161
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | errors: (none)
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | pilot state: finished 
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | transexitcode: 0
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | exeerrorcode: 0
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | exeerrordiag: 
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | exitcode: 0
[2025-11-26 19:27:23] 2025-11-27 00:26:28,423 | INFO     | exitmsg: OK
[2025-11-26 19:27:23] 2025-11-27 00:26:28,424 | INFO     | cpuconsumptiontime: 258214 s
[2025-11-26 19:27:23] 2025-11-27 00:26:28,424 | INFO     | nevents: 1000
[2025-11-26 19:27:23] 2025-11-27 00:26:28,424 | INFO     | neventsw: 0
[2025-11-26 19:27:23] 2025-11-27 00:26:28,424 | INFO     | pid: 1227125
[2025-11-26 19:27:23] 2025-11-27 00:26:28,424 | INFO     | pgrp: 1227125
[2025-11-26 19:27:23] 2025-11-27 00:26:28,424 | INFO     | corecount: 9
[2025-11-26 19:27:23] 2025-11-27 00:26:28,424 | INFO     | event service: False
[2025-11-26 19:27:23] 2025-11-27 00:26:28,424 | INFO     | sizes: {0: 2283437, 1: 2284122, 2: 2284122, 3: 2284349, 14: 2284349, 25: 2284377, 33: 2284795, 36: 2284851, 69696: 2340933, 69705: 2349955, 69707: 2350011, 69733: 
[2025-11-26 19:27:23] 2025-11-27 00:26:28,424 | INFO     | --------------------------------------------------
[2025-11-26 19:27:23] 2025-11-27 00:26:28,424 | INFO     | 
[2025-11-26 19:27:23] 2025-11-27 00:26:28,424 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-26 19:27:23] 2025-11-27 00:26:28,474 | INFO     | time since job start (69798s) is within the limit (172800.0s)
[2025-11-26 19:27:23] 2025-11-27 00:26:28,528 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,529 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,530 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,530 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,530 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,530 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:27:23] 2025-11-27 00:26:28,530 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,530 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:27:23] 2025-11-27 00:26:28,530 | INFO     | job 6897759738 has completed (purged errors)
[2025-11-26 19:27:23] 2025-11-27 00:26:28,530 | INFO     | overall cleanup function is called
[2025-11-26 19:27:23] 2025-11-27 00:26:29,565 | INFO     | --- collectZombieJob: --- 10, [1227125]
[2025-11-26 19:27:23] 2025-11-27 00:26:29,565 | INFO     | zombie collector waiting for pid 1227125
[2025-11-26 19:27:23] 2025-11-27 00:26:29,566 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:27:23] 2025-11-27 00:26:29,566 | INFO     | collected zombie processes
[2025-11-26 19:27:23] 2025-11-27 00:26:29,566 | INFO     | will attempt to kill all subprocesses of pid=1227125
[2025-11-26 19:27:23] 2025-11-27 00:26:30,758 | INFO     | process IDs to be killed: [1227125] (in reverse order)
[2025-11-26 19:27:23] 2025-11-27 00:26:31,058 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:27:23] 2025-11-27 00:26:31,058 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:27:23] 2025-11-27 00:26:31,089 | INFO     | did not find any defunct processes belonging to 1227125
[2025-11-26 19:27:23] 2025-11-27 00:26:31,124 | INFO     | did not find any defunct processes belonging to 1227125
[2025-11-26 19:27:23] 2025-11-27 00:26:31,126 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:27:23] 2025-11-27 00:26:31,126 | INFO     | ready for new job
[2025-11-26 19:27:23] 2025-11-27 00:26:31,127 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:27:23] 2025-11-27 00:26:31,166 | INFO     | ***************************************
[2025-11-26 19:27:23] 2025-11-27 00:26:31,166 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:27:23] 2025-11-27 00:26:31,166 | INFO     | ***************************************
[2025-11-26 19:27:23] 2025-11-27 00:26:31,166 | INFO     | 
[2025-11-26 19:27:23] 2025-11-27 00:26:31,173 | INFO     | architecture information:
[2025-11-26 19:27:23] 2025-11-27 00:26:31,173 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:27:23] 2025-11-27 00:26:31,241 | INFO     | cat /etc/os-release:
[2025-11-26 19:27:23] NAME="CentOS Linux"
[2025-11-26 19:27:23] VERSION="7 (Core)"
[2025-11-26 19:27:23] ID="centos"
[2025-11-26 19:27:23] ID_LIKE="rhel fedora"
[2025-11-26 19:27:23] VERSION_ID="7"
[2025-11-26 19:27:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:27:23] ANSI_COLOR="0;31"
[2025-11-26 19:27:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:27:23] HOME_URL="https://www.centos.org/"
[2025-11-26 19:27:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:27:23] 
[2025-11-26 19:27:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:27:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:27:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:27:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:27:23] 
[2025-11-26 19:27:23] 2025-11-27 00:26:31,241 | INFO     | ***************************************
[2025-11-26 19:27:23] 2025-11-27 00:26:31,757 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-26 19:27:23] 2025-11-27 00:26:31,807 | INFO     | sufficient remaining disk space (66824699904 B)
[2025-11-26 19:27:23] 2025-11-27 00:26:31,808 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:27:23] 2025-11-27 00:26:31,808 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:27:23] 2025-11-27 00:26:31,808 | INFO     | update_server=False
[2025-11-26 19:27:23] 2025-11-27 00:26:31,808 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:27:23] 2025-11-27 00:26:31,809 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:27:23] 2025-11-27 00:26:31,809 | INFO     | aborting loop
[2025-11-26 19:27:23] 2025-11-27 00:26:32,225 | INFO     | all job control threads have been joined
[2025-11-26 19:27:23] 2025-11-27 00:26:32,240 | INFO     | all payload control threads have been joined
[2025-11-26 19:27:23] 2025-11-27 00:26:32,519 | INFO     | all data control threads have been joined
[2025-11-26 19:27:23] 2025-11-27 00:26:32,813 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:32,815 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:32,933 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:32,934 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:33,140 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:33,141 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:33,141 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:33,206 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:27:23] 2025-11-27 00:26:33,231 | INFO     | [job] control thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:33,252 | INFO     | [payload] control thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:33,278 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:33,438 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:27:23] 2025-11-27 00:26:33,524 | INFO     | [data] control thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:33,963 | INFO     | [job] validate thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:34,019 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:34,443 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:35,040 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:27:23] 2025-11-27 00:26:35,213 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:26:39,047 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:27:23] 2025-11-27 00:27:03,121 | INFO     | PID=1203310 has CPU usage=4.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:27:23] 2025-11-27 00:27:03,121 | INFO     | .. there are 81 such processes running
[2025-11-26 19:27:23] 2025-11-27 00:27:03,173 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:27:23] 2025-11-27 00:27:03,173 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:27:23] 2025-11-27 00:27:03,173 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:27:23] 2025-11-27 00:27:14,505 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:27:23] 2025-11-27 00:27:16,489 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139943444047680)>', '<ExcThread(monitor, started 139943078766336)>']
[2025-11-26 19:27:23] 2025-11-27 00:27:17,283 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:27:23] 2025-11-27 00:27:17,284 | INFO     | [monitor] control thread has ended
[2025-11-26 19:27:23] 2025-11-27 00:27:21,515 | INFO     | all workflow threads have been joined
[2025-11-26 19:27:23] 2025-11-27 00:27:21,515 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:27:23] 2025-11-27 00:27:21,516 | INFO     | traces error code: 0
[2025-11-26 19:27:23] 2025-11-27 00:27:21,516 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:27:23] 2025-11-27 00:27:22,152 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:27:23] 2025-11-27 00:27:22,169 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:27:23] 2025-11-27 00:27:22,187 [wrapper] pilotpid: 1203310
[2025-11-26 19:27:23] 2025-11-27 00:27:22,202 [wrapper] Pilot exit status: 0
[2025-11-26 19:27:23] 2025-11-27 00:27:22,295 [wrapper] pandaids: 6897759738
[2025-11-26 19:27:23] 2025-11-27 00:27:22,500 [wrapper] cleanup supervisor_pilot 1367646 1203311
[2025-11-26 19:27:23] 2025-11-27 00:27:22,514 [wrapper] Test setup, not cleaning
[2025-11-26 19:27:23] 2025-11-27 00:27:22,533 [wrapper] apfmon messages muted
[2025-11-26 19:27:23] 2025-11-27 00:27:22,550 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:27:23] 2025-11-27 00:27:22,566 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:27:23]  *** Error codes and diagnostics ***
[2025-11-26 19:27:23]     "exeErrorCode": 0,
[2025-11-26 19:27:23]     "exeErrorDiag": "",
[2025-11-26 19:27:23]     "pilotErrorCode": 0,
[2025-11-26 19:27:23]     "pilotErrorDiag": "",
[2025-11-26 19:27:23]  *** Listing of results directory ***
[2025-11-26 19:27:23] total 1312224
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 19:27:23] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:27:23] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:02 run_atlas
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:02 job.xml
[2025-11-26 19:27:23] -rw-r--r--. 2 boincer umatlas 410671728 Nov 26 00:02 EVNT.47483658._002325.pool.root.1
[2025-11-26 19:27:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 19:27:23] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:02 shared
[2025-11-26 19:27:23] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:02 input.tar.gz
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:02 boinc_lockfile
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:02 pandaJob.out
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas        57 Nov 26 00:02 setup.sh.local
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-26 19:27:23] drwx------. 5 boincer umatlas      4096 Nov 26 00:03 pilot3
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas       533 Nov 26 18:59 boinc_task_state.xml
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas      6884 Nov 26 19:20 init_data.xml
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas 907328701 Nov 26 19:24 HITS.47556161._003073.pool.root.1
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas      1060 Nov 26 19:25 memory_monitor_summary.json
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:25 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas   2346467 Nov 26 19:25 log.47556161._003073.job.log.tgz.1
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas      8631 Nov 26 19:26 heartbeat.json
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas        95 Nov 26 19:27 pilot_heartbeat.json
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas      4824 Nov 26 19:27 pilotlog.txt
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas   8553063 Nov 26 19:27 log.47556161._003073.job.log.1
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:27 boinc_mmap_file
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas       353 Nov 26 19:27 output.list
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:27 runtime_log
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas  10915840 Nov 26 19:27 result.tar.gz
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas        29 Nov 26 19:27 wrapper_checkpoint.txt
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 19:27 runtime_log.err
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas       660 Nov 26 19:27 5BTNDmXbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm9iJKDmlbk8rm.diag
[2025-11-26 19:27:23] -rw-r--r--. 1 boincer umatlas     21822 Nov 26 19:27 stderr.txt
[2025-11-26 19:27:23] HITS file was successfully produced:
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas 907328701 Nov 26 19:24 shared/HITS.pool.root.1
[2025-11-26 19:27:23]  *** Contents of shared directory: ***
[2025-11-26 19:27:23] total 1298376
[2025-11-26 19:27:23] -rw-r--r--. 2 boincer umatlas 410671728 Nov 26 00:02 ATLAS.root_0
[2025-11-26 19:27:23] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 19:27:23] -rw-r--r--. 2 boincer umatlas    590110 Nov 26 00:02 input.tar.gz
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas 907328701 Nov 26 19:24 HITS.pool.root.1
[2025-11-26 19:27:23] -rw-------. 1 boincer umatlas  10915840 Nov 26 19:27 result.tar.gz
19:27:44 (1196336): run_atlas exited; CPU time 262125.176868
19:27:44 (1196336): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN