Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:52:26 (4009118): wrapper (7.7.26015): starting
23:52:26 (4009118): wrapper: running run_atlas (--nthreads 10)
[2025-11-25 23:52:26] Arguments: --nthreads 10
[2025-11-25 23:52:26] Threads: 10
[2025-11-25 23:52:26] Checking for CVMFS
[2025-11-25 23:52:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 23:52:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 23:52:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 23:52:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 23:52:28] 2.13.3.0 12359 29596 371392 153309 2 443 29188105 32935937 32505 16776704 0 181267648 99.619 176168696 32749 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-25 23:52:28] CVMFS is ok
[2025-11-25 23:52:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 23:52:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 23:52:28] Further information can be found at the LHC@home message board.
[2025-11-25 23:52:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 23:52:28] Checking for apptainer binary...
[2025-11-25 23:52:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 23:52:28] Running /usr/bin/apptainer --version
[2025-11-25 23:52:28] apptainer version 1.4.4-1.el9
[2025-11-25 23:52:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 23:52:29] c6-12-29-3.aglt2.org
[2025-11-25 23:52:29] apptainer works
[2025-11-25 23:52:29] Set ATHENA_PROC_NUMBER=10
[2025-11-25 23:52:29] Set ATHENA_CORE_NUMBER=10
[2025-11-25 23:52:29] Starting ATLAS job with PandaID=6897863935
[2025-11-25 23:52:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-27 10:31:35]  *** The last 200 lines of the pilot log: ***
[2025-11-27 10:31:35] 2025-11-27 15:30:36,764 | INFO     | monitor loop #6479: job 0:6897863935 is in state 'finished'
[2025-11-27 10:31:35] 2025-11-27 15:30:36,764 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:31:35] 2025-11-27 15:30:37,391 | INFO     | time since job start (124625s) is within the limit (172800.0s)
[2025-11-27 10:31:35] 2025-11-27 15:30:39,318 | INFO     | monitor loop #6480: job 0:6897863935 is in state 'finished'
[2025-11-27 10:31:35] 2025-11-27 15:30:39,318 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:31:35] 2025-11-27 15:30:39,398 | INFO     | time since job start (124627s) is within the limit (172800.0s)
[2025-11-27 10:31:35] 2025-11-27 15:30:41,405 | INFO     | time since job start (124629s) is within the limit (172800.0s)
[2025-11-27 10:31:35] 2025-11-27 15:30:41,842 | INFO     | monitor loop #6481: job 0:6897863935 is in state 'finished'
[2025-11-27 10:31:35] 2025-11-27 15:30:41,842 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:31:35] 2025-11-27 15:30:43,412 | INFO     | time since job start (124631s) is within the limit (172800.0s)
[2025-11-27 10:31:35] 2025-11-27 15:30:44,370 | INFO     | monitor loop #6482: job 0:6897863935 is in state 'finished'
[2025-11-27 10:31:35] 2025-11-27 15:30:44,370 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:31:35] 2025-11-27 15:30:45,419 | INFO     | time since job start (124633s) is within the limit (172800.0s)
[2025-11-27 10:31:35] 2025-11-27 15:30:45,828 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-27 10:31:35] 2025-11-27 15:30:45,859 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2566.418552083335
[2025-11-27 10:31:35] 2025-11-27 15:30:45,998 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6897863935/memory_monitor_summary.json (trf name=prmon)
[2025-11-27 10:31:35] 2025-11-27 15:30:45,999 | INFO     | extracted standard info from prmon json
[2025-11-27 10:31:35] 2025-11-27 15:30:45,999 | INFO     | extracted standard memory fields from prmon json
[2025-11-27 10:31:35] 2025-11-27 15:30:45,999 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-27 10:31:35] 2025-11-27 15:30:46,326 | INFO     | fitting pss+swap vs Time
[2025-11-27 10:31:35] 2025-11-27 15:30:46,350 | INFO     | sum of square deviations: 2632434760339.4326
[2025-11-27 10:31:35] 2025-11-27 15:30:46,533 | INFO     | sum of deviations: 9691751635081.615
[2025-11-27 10:31:35] 2025-11-27 15:30:46,533 | INFO     | mean x: 1764195144.8166666
[2025-11-27 10:31:35] 2025-11-27 15:30:46,533 | INFO     | mean y: 3250790.410784314
[2025-11-27 10:31:35] 2025-11-27 15:30:46,533 | INFO     | intersect: -6491930566.780874
[2025-11-27 10:31:35] 2025-11-27 15:30:46,540 | INFO     | chi2: 26.83479934221039
[2025-11-27 10:31:35] 2025-11-27 15:30:46,547 | INFO     | sum of square deviations: 2613127463263.9414
[2025-11-27 10:31:35] 2025-11-27 15:30:46,735 | INFO     | sum of deviations: 10514515714440.691
[2025-11-27 10:31:35] 2025-11-27 15:30:46,735 | INFO     | mean x: 1764194992.3243244
[2025-11-27 10:31:35] 2025-11-27 15:30:46,735 | INFO     | mean y: 3257287.7837837837
[2025-11-27 10:31:35] 2025-11-27 15:30:46,735 | INFO     | intersect: -7095384562.224609
[2025-11-27 10:31:35] 2025-11-27 15:30:46,742 | INFO     | chi2: 23.080265517144824
[2025-11-27 10:31:35] 2025-11-27 15:30:46,742 | INFO     | current chi2=23.080265517144824 (change=13.991287123804902 %)
[2025-11-27 10:31:35] 2025-11-27 15:30:46,743 | INFO     | right removable region: 2034
[2025-11-27 10:31:35] 2025-11-27 15:30:46,750 | INFO     | sum of square deviations: 2613123460194.2935
[2025-11-27 10:31:35] 2025-11-27 15:30:46,912 | INFO     | monitor loop #6483: job 0:6897863935 is in state 'finished'
[2025-11-27 10:31:35] 2025-11-27 15:30:46,912 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-27 10:31:35] 2025-11-27 15:30:46,929 | INFO     | sum of deviations: 8788011527573.666
[2025-11-27 10:31:35] 2025-11-27 15:30:46,929 | INFO     | mean x: 1764195297.3248158
[2025-11-27 10:31:35] 2025-11-27 15:30:46,929 | INFO     | mean y: 3257927.0004914007
[2025-11-27 10:31:35] 2025-11-27 15:30:46,929 | INFO     | intersect: -5929783066.259345
[2025-11-27 10:31:35] 2025-11-27 15:30:46,936 | INFO     | chi2: 23.002303432838332
[2025-11-27 10:31:35] 2025-11-27 15:30:46,937 | INFO     | current chi2=23.002303432838332 (change=14.281813180334268 %)
[2025-11-27 10:31:35] 2025-11-27 15:30:46,937 | INFO     | left removable region: 10
[2025-11-27 10:31:35] 2025-11-27 15:30:46,939 | INFO     | sum of square deviations: 2570976526896.0884
[2025-11-27 10:31:35] 2025-11-27 15:30:47,177 | INFO     | sum of deviations: 9194462247287.889
[2025-11-27 10:31:35] 2025-11-27 15:30:47,177 | INFO     | mean x: 1764195266.8414032
[2025-11-27 10:31:35] 2025-11-27 15:30:47,177 | INFO     | mean y: 3270135.2208498023
[2025-11-27 10:31:35] 2025-11-27 15:30:47,178 | INFO     | intersect: -6305938295.165129
[2025-11-27 10:31:35] 2025-11-27 15:30:47,184 | INFO     | chi2: 17.166976798526036
[2025-11-27 10:31:35] 2025-11-27 15:30:47,185 | INFO     | current memory leak: 3.58 B/s (using 2024 data points, chi2=17.17)
[2025-11-27 10:31:35] 2025-11-27 15:30:47,190 | INFO     | could have reported an average CPU frequency of 2584 MHz (71 samples)
[2025-11-27 10:31:35] 2025-11-27 15:30:47,190 | INFO     | ..............................
[2025-11-27 10:31:35] 2025-11-27 15:30:47,190 | INFO     | . Timing measurements:
[2025-11-27 10:31:35] 2025-11-27 15:30:47,190 | INFO     | . get job = 0 s
[2025-11-27 10:31:35] 2025-11-27 15:30:47,190 | INFO     | . initial setup = 4 s
[2025-11-27 10:31:35] 2025-11-27 15:30:47,191 | INFO     | . payload setup = 43 s
[2025-11-27 10:31:35] 2025-11-27 15:30:47,191 | INFO     | . stage-in = 0 s
[2025-11-27 10:31:35] 2025-11-27 15:30:47,191 | INFO     | . payload execution = 124465 s
[2025-11-27 10:31:35] 2025-11-27 15:30:47,191 | INFO     | . stage-out = 18 s
[2025-11-27 10:31:35] 2025-11-27 15:30:47,191 | INFO     | . log creation = 5 s
[2025-11-27 10:31:35] 2025-11-27 15:30:47,191 | INFO     | ..............................
[2025-11-27 10:31:35] 2025-11-27 15:30:47,440 | INFO     | time since job start (124635s) is within the limit (172800.0s)
[2025-11-27 10:31:35] 2025-11-27 15:30:47,717 | INFO     | 
[2025-11-27 10:31:35] 2025-11-27 15:30:47,739 | INFO     | job summary report
[2025-11-27 10:31:35] 2025-11-27 15:30:47,739 | INFO     | --------------------------------------------------
[2025-11-27 10:31:35] 2025-11-27 15:30:47,739 | INFO     | PanDA job id: 6897863935
[2025-11-27 10:31:35] 2025-11-27 15:30:47,739 | INFO     | task id: 47556161
[2025-11-27 10:31:35] 2025-11-27 15:30:47,739 | INFO     | errors: (none)
[2025-11-27 10:31:35] 2025-11-27 15:30:47,739 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | pilot state: finished 
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | transexitcode: 0
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | exeerrorcode: 0
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | exeerrordiag: 
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | exitcode: 0
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | exitmsg: OK
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | cpuconsumptiontime: 278466 s
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | nevents: 1000
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | neventsw: 0
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | pid: 4029322
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | pgrp: 4029322
[2025-11-27 10:31:35] 2025-11-27 15:30:47,740 | INFO     | corecount: 10
[2025-11-27 10:31:35] 2025-11-27 15:30:47,741 | INFO     | event service: False
[2025-11-27 10:31:35] 2025-11-27 15:30:47,741 | INFO     | sizes: {0: 2284038, 1: 2284122, 2: 2284150, 3: 2284321, 14: 2284349, 25: 2284377, 32: 2284795, 36: 2284823, 124513: 2365657, 124532: 2374707, 124569: 2374897}
[2025-11-27 10:31:35] 2025-11-27 15:30:47,741 | INFO     | --------------------------------------------------
[2025-11-27 10:31:35] 2025-11-27 15:30:47,741 | INFO     | 
[2025-11-27 10:31:35] 2025-11-27 15:30:47,741 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-27 10:31:35] 2025-11-27 15:30:47,868 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,869 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,869 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,869 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,869 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,869 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,869 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,869 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,869 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,869 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,869 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,870 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,870 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,870 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,870 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,870 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,870 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,870 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-27 10:31:35] 2025-11-27 15:30:47,870 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,870 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-27 10:31:35] 2025-11-27 15:30:47,870 | INFO     | job 6897863935 has completed (purged errors)
[2025-11-27 10:31:35] 2025-11-27 15:30:47,871 | INFO     | overall cleanup function is called
[2025-11-27 10:31:35] 2025-11-27 15:30:48,974 | INFO     | --- collectZombieJob: --- 10, [4029322]
[2025-11-27 10:31:35] 2025-11-27 15:30:48,974 | INFO     | zombie collector waiting for pid 4029322
[2025-11-27 10:31:35] 2025-11-27 15:30:48,974 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-27 10:31:35] 2025-11-27 15:30:48,974 | INFO     | collected zombie processes
[2025-11-27 10:31:35] 2025-11-27 15:30:48,974 | INFO     | will attempt to kill all subprocesses of pid=4029322
[2025-11-27 10:31:35] 2025-11-27 15:30:51,283 | INFO     | process IDs to be killed: [4029322] (in reverse order)
[2025-11-27 10:31:35] 2025-11-27 15:30:51,813 | WARNING  | found no corresponding commands to process id(s)
[2025-11-27 10:31:35] 2025-11-27 15:30:51,813 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-27 10:31:35] 2025-11-27 15:30:51,944 | INFO     | did not find any defunct processes belonging to 4029322
[2025-11-27 10:31:35] 2025-11-27 15:30:52,268 | INFO     | did not find any defunct processes belonging to 4029322
[2025-11-27 10:31:35] 2025-11-27 15:30:52,291 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-27 10:31:35] 2025-11-27 15:30:52,291 | INFO     | ready for new job
[2025-11-27 10:31:35] 2025-11-27 15:30:52,292 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-27 10:31:35] 2025-11-27 15:30:52,322 | INFO     | ***************************************
[2025-11-27 10:31:35] 2025-11-27 15:30:52,323 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-27 10:31:35] 2025-11-27 15:30:52,348 | INFO     | ***************************************
[2025-11-27 10:31:35] 2025-11-27 15:30:52,348 | INFO     | 
[2025-11-27 10:31:35] 2025-11-27 15:30:52,378 | INFO     | architecture information:
[2025-11-27 10:31:35] 2025-11-27 15:30:52,389 | INFO     | executing command: cat /etc/os-release
[2025-11-27 10:31:35] 2025-11-27 15:30:52,514 | INFO     | cat /etc/os-release:
[2025-11-27 10:31:35] NAME="CentOS Linux"
[2025-11-27 10:31:35] VERSION="7 (Core)"
[2025-11-27 10:31:35] ID="centos"
[2025-11-27 10:31:35] ID_LIKE="rhel fedora"
[2025-11-27 10:31:35] VERSION_ID="7"
[2025-11-27 10:31:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-27 10:31:35] ANSI_COLOR="0;31"
[2025-11-27 10:31:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-27 10:31:35] HOME_URL="https://www.centos.org/"
[2025-11-27 10:31:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-27 10:31:35] 
[2025-11-27 10:31:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-27 10:31:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-27 10:31:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-27 10:31:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-27 10:31:35] 
[2025-11-27 10:31:35] 2025-11-27 15:30:52,515 | INFO     | ***************************************
[2025-11-27 10:31:35] 2025-11-27 15:30:53,017 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-27 10:31:35] 2025-11-27 15:30:53,097 | INFO     | sufficient remaining disk space (82298535936 B)
[2025-11-27 10:31:35] 2025-11-27 15:30:53,097 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-27 10:31:35] 2025-11-27 15:30:53,097 | INFO     | current server update state: UPDATING_FINAL
[2025-11-27 10:31:35] 2025-11-27 15:30:53,098 | INFO     | update_server=False
[2025-11-27 10:31:35] 2025-11-27 15:30:53,098 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-27 10:31:35] 2025-11-27 15:30:53,098 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:31:35] 2025-11-27 15:30:53,102 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-27 10:31:35] 2025-11-27 15:30:53,102 | INFO     | aborting loop
[2025-11-27 10:31:35] 2025-11-27 15:30:53,414 | INFO     | all data control threads have been joined
[2025-11-27 10:31:35] 2025-11-27 15:30:53,491 | INFO     | all job control threads have been joined
[2025-11-27 10:31:35] 2025-11-27 15:30:53,573 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-27 10:31:35] 2025-11-27 15:30:54,106 | INFO     | [job] retrieve thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:54,107 | INFO     | [job] queue monitor thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:54,107 | INFO     | [job] job monitor thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:54,115 | INFO     | [payload] validate_post thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:54,405 | INFO     | all payload control threads have been joined
[2025-11-27 10:31:35] 2025-11-27 15:30:54,420 | INFO     | [data] control thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:54,434 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-27 10:31:35] 2025-11-27 15:30:54,500 | INFO     | [job] control thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:55,060 | INFO     | [payload] failed_post thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:55,103 | INFO     | [payload] execute_payloads thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:55,174 | INFO     | [payload] validate_pre thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:55,210 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:55,210 | INFO     | [data] copytool_in thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:55,211 | INFO     | [job] validate thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:55,211 | INFO     | [job] create_data_payload thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:55,451 | INFO     | [payload] control thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:56,450 | INFO     | [data] copytool_out thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:30:57,584 | INFO     | [data] queue_monitor thread has finished
[2025-11-27 10:31:35] 2025-11-27 15:31:23,047 | INFO     | [monitor] cgroup control has ended
[2025-11-27 10:31:35] 2025-11-27 15:31:24,656 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140292093695808)>', '<ExcThread(monitor, started 140291608667904)>']
[2025-11-27 10:31:35] 2025-11-27 15:31:29,721 | INFO     | all workflow threads have been joined
[2025-11-27 10:31:35] 2025-11-27 15:31:29,721 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-27 10:31:35] 2025-11-27 15:31:29,722 | INFO     | traces error code: 0
[2025-11-27 10:31:35] 2025-11-27 15:31:29,722 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-27 10:31:35] 2025-11-27 15:31:32,232 | INFO     | PID=4021065 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-27 10:31:35] 2025-11-27 15:31:32,233 | INFO     | .. there are 55 such processes running
[2025-11-27 10:31:35] 2025-11-27 15:31:32,233 | INFO     | found 0 job(s) in 20 queues
[2025-11-27 10:31:35] 2025-11-27 15:31:32,233 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-27 10:31:35] 2025-11-27 15:31:32,233 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-27 10:31:35] 2025-11-27 15:31:32,233 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-27 10:31:35] 2025-11-27 15:31:32,234 | CRITICAL | thread 'MainThread' is not alive
[2025-11-27 10:31:35] 2025-11-27 15:31:32,234 | INFO     | [monitor] control thread has ended
[2025-11-27 10:31:35] 2025-11-27 15:31:33,751 [wrapper] ==== pilot stdout END ====
[2025-11-27 10:31:35] 2025-11-27 15:31:33,777 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-27 10:31:35] 2025-11-27 15:31:33,796 [wrapper] pilotpid: 4021065
[2025-11-27 10:31:35] 2025-11-27 15:31:33,824 [wrapper] Pilot exit status: 0
[2025-11-27 10:31:35] 2025-11-27 15:31:33,898 [wrapper] pandaids: 6897863935
[2025-11-27 10:31:35] 2025-11-27 15:31:34,067 [wrapper] cleanup supervisor_pilot 1255230 4021066
[2025-11-27 10:31:35] 2025-11-27 15:31:34,078 [wrapper] Test setup, not cleaning
[2025-11-27 10:31:35] 2025-11-27 15:31:34,095 [wrapper] apfmon messages muted
[2025-11-27 10:31:35] 2025-11-27 15:31:34,114 [wrapper] ==== wrapper stdout END ====
[2025-11-27 10:31:35] 2025-11-27 15:31:34,128 [wrapper] ==== wrapper stderr END ====
[2025-11-27 10:31:35]  *** Error codes and diagnostics ***
[2025-11-27 10:31:35]     "exeErrorCode": 0,
[2025-11-27 10:31:35]     "exeErrorDiag": "",
[2025-11-27 10:31:35]     "pilotErrorCode": 0,
[2025-11-27 10:31:35]     "pilotErrorDiag": "",
[2025-11-27 10:31:35]  *** Listing of results directory ***
[2025-11-27 10:31:35] total 1332424
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-27 10:31:35] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas       100 Nov 25 23:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-27 10:31:35] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 25 23:52 run_atlas
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas       105 Nov 25 23:52 job.xml
[2025-11-27 10:31:35] -rw-r--r--. 2 boincer umatlas 410084521 Nov 25 23:52 EVNT.47483658._002338.pool.root.1
[2025-11-27 10:31:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 23:52 start_atlas.sh
[2025-11-27 10:31:35] drwxrwx--x. 2 boincer umatlas      4096 Nov 25 23:52 shared
[2025-11-27 10:31:35] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 23:52 input.tar.gz
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas         0 Nov 25 23:52 boinc_lockfile
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas      2786 Nov 25 23:52 pandaJob.out
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas        57 Nov 25 23:52 setup.sh.local
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas    991877 Nov 25 23:53 agis_schedconf.cvmfs.json
[2025-11-27 10:31:35] drwx------. 5 boincer umatlas      4096 Nov 25 23:53 pilot3
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas       534 Nov 27 09:38 boinc_task_state.xml
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas      6882 Nov 27 10:20 init_data.xml
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas 915453525 Nov 27 10:27 HITS.47556161._003209.pool.root.1
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas      1059 Nov 27 10:29 memory_monitor_summary.json
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas   1516240 Nov 27 10:30 agis_ddmendpoints.agis.ALL.json
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas   3032891 Nov 27 10:30 log.47556161._003209.job.log.tgz.1
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas        95 Nov 27 10:30 pilot_heartbeat.json
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas      8633 Nov 27 10:30 heartbeat.json
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas       893 Nov 27 10:31 pilotlog.txt
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas      8192 Nov 27 10:31 boinc_mmap_file
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas        30 Nov 27 10:31 wrapper_checkpoint.txt
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas  14441654 Nov 27 10:31 log.47556161._003209.job.log.1
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas       353 Nov 27 10:31 output.list
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas       620 Nov 27 10:31 runtime_log
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas  17489920 Nov 27 10:31 result.tar.gz
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas       665 Nov 27 10:31 xRDLDmYbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmKeMKDmSiFG9m.diag
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas      9356 Nov 27 10:31 runtime_log.err
[2025-11-27 10:31:35] -rw-r--r--. 1 boincer umatlas     21806 Nov 27 10:31 stderr.txt
[2025-11-27 10:31:35] HITS file was successfully produced:
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas 915453525 Nov 27 10:27 shared/HITS.pool.root.1
[2025-11-27 10:31:35]  *** Contents of shared directory: ***
[2025-11-27 10:31:35] total 1312160
[2025-11-27 10:31:35] -rw-r--r--. 2 boincer umatlas 410084521 Nov 25 23:52 ATLAS.root_0
[2025-11-27 10:31:35] -rw-r--r--. 2 boincer umatlas     15847 Nov 25 23:52 start_atlas.sh
[2025-11-27 10:31:35] -rw-r--r--. 2 boincer umatlas    590108 Nov 25 23:52 input.tar.gz
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas 915453525 Nov 27 10:27 HITS.pool.root.1
[2025-11-27 10:31:35] -rw-------. 1 boincer umatlas  17489920 Nov 27 10:31 result.tar.gz
10:31:36 (4009118): run_atlas exited; CPU time 284346.010882
10:31:36 (4009118): called boinc_finish(0)

</stderr_txt>
]]>

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