Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:08 (3100084): wrapper (7.7.26015): starting
00:01:08 (3100084): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:01:08] Arguments: --nthreads 9
[2025-11-26 00:01:08] Threads: 9
[2025-11-26 00:01:08] Checking for CVMFS
[2025-11-26 00:01:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:01:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:01:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:01:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:01:10] 2.13.3.0 9456 29603 352640 153309 2 646 28672048 32935937 24372 16776704 0 92850145 99.402 139646984 41007 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:01:10] CVMFS is ok
[2025-11-26 00:01:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:01:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:01:10] Further information can be found at the LHC@home message board.
[2025-11-26 00:01:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:01:10] Checking for apptainer binary...
[2025-11-26 00:01:10] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:01:10] Running /usr/bin/apptainer --version
[2025-11-26 00:01:11] apptainer version 1.4.4-1.el9
[2025-11-26 00:01:11] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:01:11] c6-5-7-2.aglt2.org
[2025-11-26 00:01:11] apptainer works
[2025-11-26 00:01:11] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:01:11] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:01:11] Starting ATLAS job with PandaID=6897759728
[2025-11-26 00:01:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 19:40:48]  *** The last 200 lines of the pilot log: ***
[2025-11-26 19:40:48] 2025-11-27 00:40:02,839 | INFO     | sum of square deviations: 478980413854.9993
[2025-11-26 19:40:48] 2025-11-27 00:40:02,864 | INFO     | time since job start (70659s) is within the limit (172800.0s)
[2025-11-26 19:40:48] 2025-11-27 00:40:02,882 | INFO     | sum of deviations: 4905450501215.8
[2025-11-26 19:40:48] 2025-11-27 00:40:02,883 | INFO     | mean x: 1764168719.3235295
[2025-11-26 19:40:48] 2025-11-27 00:40:02,883 | INFO     | mean y: 3055203.48183391
[2025-11-26 19:40:48] 2025-11-27 00:40:02,883 | INFO     | intersect: -18064577789.65901
[2025-11-26 19:40:48] 2025-11-27 00:40:02,889 | INFO     | chi2: 9.789990909345788
[2025-11-26 19:40:48] 2025-11-27 00:40:02,890 | INFO     | sum of square deviations: 472794033656.18604
[2025-11-26 19:40:48] 2025-11-27 00:40:02,920 | INFO     | sum of deviations: 5275193565737.958
[2025-11-26 19:40:48] 2025-11-27 00:40:02,920 | INFO     | mean x: 1764168566.853171
[2025-11-26 19:40:48] 2025-11-27 00:40:02,920 | INFO     | mean y: 3064314.490877498
[2025-11-26 19:40:48] 2025-11-27 00:40:02,920 | INFO     | intersect: -19680624586.516975
[2025-11-26 19:40:48] 2025-11-27 00:40:02,921 | INFO     | chi2: 7.119304488168906
[2025-11-26 19:40:48] 2025-11-27 00:40:02,922 | INFO     | current chi2=7.119304488168906 (change=27.27976405603577 %)
[2025-11-26 19:40:48] 2025-11-27 00:40:02,924 | INFO     | sum of square deviations: 466660979114.1224
[2025-11-26 19:40:48] 2025-11-27 00:40:02,949 | INFO     | sum of deviations: 5272682199932.208
[2025-11-26 19:40:48] 2025-11-27 00:40:02,949 | INFO     | mean x: 1764168414.3804538
[2025-11-26 19:40:48] 2025-11-27 00:40:02,949 | INFO     | mean y: 3064249.107329843
[2025-11-26 19:40:48] 2025-11-27 00:40:02,949 | INFO     | intersect: -19929820248.423496
[2025-11-26 19:40:48] 2025-11-27 00:40:02,951 | INFO     | chi2: 7.032313030875698
[2025-11-26 19:40:48] 2025-11-27 00:40:02,951 | INFO     | current chi2=7.032313030875698 (change=1.221909491829901 %)
[2025-11-26 19:40:48] 2025-11-27 00:40:02,951 | INFO     | right removable region: 1145
[2025-11-26 19:40:48] 2025-11-27 00:40:02,952 | INFO     | sum of square deviations: 472789221976.18567
[2025-11-26 19:40:48] 2025-11-27 00:40:02,977 | INFO     | sum of deviations: 4409256598698.482
[2025-11-26 19:40:48] 2025-11-27 00:40:02,977 | INFO     | mean x: 1764168871.853171
[2025-11-26 19:40:48] 2025-11-27 00:40:02,977 | INFO     | mean y: 3067426.6064291922
[2025-11-26 19:40:48] 2025-11-27 00:40:02,978 | INFO     | intersect: -16449662199.765768
[2025-11-26 19:40:48] 2025-11-27 00:40:02,979 | INFO     | chi2: 5.553458451730286
[2025-11-26 19:40:48] 2025-11-27 00:40:02,979 | INFO     | current chi2=5.553458451730286 (change=43.27412044449596 %)
[2025-11-26 19:40:48] 2025-11-27 00:40:02,980 | INFO     | sum of square deviations: 466651565982.83167
[2025-11-26 19:40:48] 2025-11-27 00:40:03,005 | INFO     | sum of deviations: 4028746132983.6206
[2025-11-26 19:40:48] 2025-11-27 00:40:03,006 | INFO     | mean x: 1764169024.3830717
[2025-11-26 19:40:48] 2025-11-27 00:40:03,006 | INFO     | mean y: 3076879.310645724
[2025-11-26 19:40:48] 2025-11-27 00:40:03,006 | INFO     | intersect: -15227535536.922565
[2025-11-26 19:40:48] 2025-11-27 00:40:03,012 | INFO     | chi2: 3.225550132982449
[2025-11-26 19:40:48] 2025-11-27 00:40:03,012 | INFO     | current chi2=3.225550132982449 (change=41.918172954414246 %)
[2025-11-26 19:40:48] 2025-11-27 00:40:03,014 | INFO     | sum of square deviations: 460568610832.5891
[2025-11-26 19:40:48] 2025-11-27 00:40:03,045 | INFO     | sum of deviations: 3899267478354.031
[2025-11-26 19:40:48] 2025-11-27 00:40:03,045 | INFO     | mean x: 1764169176.8957055
[2025-11-26 19:40:48] 2025-11-27 00:40:03,045 | INFO     | mean y: 3080125.3531989483
[2025-11-26 19:40:48] 2025-11-27 00:40:03,045 | INFO     | intersect: -14932734726.094507
[2025-11-26 19:40:48] 2025-11-27 00:40:03,047 | INFO     | chi2: 3.106624153017887
[2025-11-26 19:40:48] 2025-11-27 00:40:03,047 | INFO     | current chi2=3.106624153017887 (change=3.686998343274841 %)
[2025-11-26 19:40:48] 2025-11-27 00:40:03,047 | INFO     | left removable region: 30
[2025-11-26 19:40:48] 2025-11-27 00:40:03,048 | INFO     | sum of square deviations: 429792829499.56635
[2025-11-26 19:40:48] 2025-11-27 00:40:03,071 | INFO     | sum of deviations: 3959362425969.8667
[2025-11-26 19:40:48] 2025-11-27 00:40:03,072 | INFO     | mean x: 1764169299.019731
[2025-11-26 19:40:48] 2025-11-27 00:40:03,072 | INFO     | mean y: 3097127.3695067265
[2025-11-26 19:40:48] 2025-11-27 00:40:03,072 | INFO     | intersect: -16248885586.537935
[2025-11-26 19:40:48] 2025-11-27 00:40:03,075 | INFO     | chi2: 0.15281934290170618
[2025-11-26 19:40:48] 2025-11-27 00:40:03,076 | INFO     | current memory leak: 9.21 B/s (using 1115 data points, chi2=0.15)
[2025-11-26 19:40:48] 2025-11-27 00:40:03,077 | INFO     | could have reported an average CPU frequency of 2948 MHz (42 samples)
[2025-11-26 19:40:48] 2025-11-27 00:40:03,078 | INFO     | ..............................
[2025-11-26 19:40:48] 2025-11-27 00:40:03,078 | INFO     | . Timing measurements:
[2025-11-26 19:40:48] 2025-11-27 00:40:03,078 | INFO     | . get job = 0 s
[2025-11-26 19:40:48] 2025-11-27 00:40:03,078 | INFO     | . initial setup = 7 s
[2025-11-26 19:40:48] 2025-11-27 00:40:03,078 | INFO     | . payload setup = 44 s
[2025-11-26 19:40:48] 2025-11-27 00:40:03,078 | INFO     | . stage-in = 0 s
[2025-11-26 19:40:48] 2025-11-27 00:40:03,078 | INFO     | . payload execution = 70531 s
[2025-11-26 19:40:48] 2025-11-27 00:40:03,078 | INFO     | . stage-out = 4 s
[2025-11-26 19:40:48] 2025-11-27 00:40:03,078 | INFO     | . log creation = 0 s
[2025-11-26 19:40:48] 2025-11-27 00:40:03,078 | INFO     | ..............................
[2025-11-26 19:40:48] 2025-11-27 00:40:03,663 | INFO     | 
[2025-11-26 19:40:48] 2025-11-27 00:40:03,667 | INFO     | job summary report
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | --------------------------------------------------
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | PanDA job id: 6897759728
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | task id: 47556161
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | errors: (none)
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | pilot state: finished 
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | transexitcode: 0
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | exeerrorcode: 0
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | exeerrordiag: 
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | exitcode: 0
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | exitmsg: OK
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | cpuconsumptiontime: 238610 s
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | nevents: 1000
[2025-11-26 19:40:48] 2025-11-27 00:40:03,668 | INFO     | neventsw: 0
[2025-11-26 19:40:48] 2025-11-27 00:40:03,669 | INFO     | pid: 3124982
[2025-11-26 19:40:48] 2025-11-27 00:40:03,669 | INFO     | pgrp: 3124982
[2025-11-26 19:40:48] 2025-11-27 00:40:03,669 | INFO     | corecount: 9
[2025-11-26 19:40:48] 2025-11-27 00:40:03,669 | INFO     | event service: False
[2025-11-26 19:40:48] 2025-11-27 00:40:03,669 | INFO     | sizes: {0: 2284038, 1: 2284094, 3: 2284150, 4: 2284150, 5: 2284321, 6: 2284377, 17: 2284533, 28: 2284561, 37: 2284851, 38: 2284879, 70579: 2341109, 70580: 2341388,
[2025-11-26 19:40:48] 2025-11-27 00:40:03,669 | INFO     | --------------------------------------------------
[2025-11-26 19:40:48] 2025-11-27 00:40:03,669 | INFO     | 
[2025-11-26 19:40:48] 2025-11-27 00:40:03,669 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-26 19:40:48] 2025-11-27 00:40:03,704 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,705 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,706 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,706 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,706 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,706 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 19:40:48] 2025-11-27 00:40:03,706 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,706 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 19:40:48] 2025-11-27 00:40:03,706 | INFO     | job 6897759728 has completed (purged errors)
[2025-11-26 19:40:48] 2025-11-27 00:40:03,706 | INFO     | overall cleanup function is called
[2025-11-26 19:40:48] 2025-11-27 00:40:04,721 | INFO     | --- collectZombieJob: --- 10, [3124982]
[2025-11-26 19:40:48] 2025-11-27 00:40:04,722 | INFO     | zombie collector waiting for pid 3124982
[2025-11-26 19:40:48] 2025-11-27 00:40:04,722 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 19:40:48] 2025-11-27 00:40:04,722 | INFO     | collected zombie processes
[2025-11-26 19:40:48] 2025-11-27 00:40:04,722 | INFO     | will attempt to kill all subprocesses of pid=3124982
[2025-11-26 19:40:48] 2025-11-27 00:40:05,116 | INFO     | process IDs to be killed: [3124982] (in reverse order)
[2025-11-26 19:40:48] 2025-11-27 00:40:05,298 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 19:40:48] 2025-11-27 00:40:05,298 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 19:40:48] 2025-11-27 00:40:05,313 | INFO     | did not find any defunct processes belonging to 3124982
[2025-11-26 19:40:48] 2025-11-27 00:40:05,327 | INFO     | did not find any defunct processes belonging to 3124982
[2025-11-26 19:40:48] 2025-11-27 00:40:05,329 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 19:40:48] 2025-11-27 00:40:05,329 | INFO     | ready for new job
[2025-11-26 19:40:48] 2025-11-27 00:40:05,329 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 19:40:48] 2025-11-27 00:40:05,340 | INFO     | ***************************************
[2025-11-26 19:40:48] 2025-11-27 00:40:05,340 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 19:40:48] 2025-11-27 00:40:05,340 | INFO     | ***************************************
[2025-11-26 19:40:48] 2025-11-27 00:40:05,340 | INFO     | 
[2025-11-26 19:40:48] 2025-11-27 00:40:05,351 | INFO     | architecture information:
[2025-11-26 19:40:48] 2025-11-27 00:40:05,356 | INFO     | executing command: cat /etc/os-release
[2025-11-26 19:40:48] 2025-11-27 00:40:05,391 | INFO     | cat /etc/os-release:
[2025-11-26 19:40:48] NAME="CentOS Linux"
[2025-11-26 19:40:48] VERSION="7 (Core)"
[2025-11-26 19:40:48] ID="centos"
[2025-11-26 19:40:48] ID_LIKE="rhel fedora"
[2025-11-26 19:40:48] VERSION_ID="7"
[2025-11-26 19:40:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 19:40:48] ANSI_COLOR="0;31"
[2025-11-26 19:40:48] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 19:40:48] HOME_URL="https://www.centos.org/"
[2025-11-26 19:40:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 19:40:48] 
[2025-11-26 19:40:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 19:40:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 19:40:48] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 19:40:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 19:40:48] 
[2025-11-26 19:40:48] 2025-11-27 00:40:05,391 | INFO     | ***************************************
[2025-11-26 19:40:48] 2025-11-27 00:40:05,896 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-26 19:40:48] 2025-11-27 00:40:05,925 | INFO     | sufficient remaining disk space (72949432320 B)
[2025-11-26 19:40:48] 2025-11-27 00:40:05,926 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 19:40:48] 2025-11-27 00:40:05,926 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 19:40:48] 2025-11-27 00:40:05,927 | INFO     | update_server=False
[2025-11-26 19:40:48] 2025-11-27 00:40:05,927 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 19:40:48] 2025-11-27 00:40:05,995 | INFO     | all data control threads have been joined
[2025-11-26 19:40:48] 2025-11-27 00:40:06,081 | INFO     | all payload control threads have been joined
[2025-11-26 19:40:48] 2025-11-27 00:40:06,239 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-26 19:40:48] 2025-11-27 00:40:06,240 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-26 19:40:48] 2025-11-27 00:40:06,240 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:40:48] 2025-11-27 00:40:06,240 | INFO     | will abort loop
[2025-11-26 19:40:48] 2025-11-27 00:40:06,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 19:40:48] 2025-11-27 00:40:06,932 | INFO     | [job] retrieve thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:07,001 | INFO     | [data] control thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:07,086 | INFO     | [payload] control thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:07,133 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:07,239 | INFO     | all job control threads have been joined
[2025-11-26 19:40:48] 2025-11-27 00:40:07,244 | INFO     | [job] job monitor thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:07,284 | INFO     | [data] copytool_in thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:07,341 | INFO     | [job] validate thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:07,620 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:07,932 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:08,178 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 19:40:48] 2025-11-27 00:40:08,245 | INFO     | [job] control thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:08,341 | INFO     | [payload] validate_post thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:08,432 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:08,513 | INFO     | [payload] failed_post thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:08,934 | INFO     | [data] copytool_out thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:09,034 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 19:40:48] 2025-11-27 00:40:09,182 | INFO     | [job] queue monitor thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:13,043 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 19:40:48] 2025-11-27 00:40:36,517 | INFO     | PID=3107649 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 19:40:48] 2025-11-27 00:40:36,517 | INFO     | .. there are 31 such processes running
[2025-11-26 19:40:48] 2025-11-27 00:40:36,518 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 19:40:48] 2025-11-27 00:40:36,518 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 19:40:48] 2025-11-27 00:40:36,518 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 19:40:48] 2025-11-27 00:40:41,136 | INFO     | [monitor] cgroup control has ended
[2025-11-26 19:40:48] 2025-11-27 00:40:42,564 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139735996868416)>', '<ExcThread(monitor, started 139735276185344)>']
[2025-11-26 19:40:48] 2025-11-27 00:40:43,561 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 19:40:48] 2025-11-27 00:40:43,562 | INFO     | [monitor] control thread has ended
[2025-11-26 19:40:48] 2025-11-27 00:40:47,590 | INFO     | all workflow threads have been joined
[2025-11-26 19:40:48] 2025-11-27 00:40:47,591 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 19:40:48] 2025-11-27 00:40:47,591 | INFO     | traces error code: 0
[2025-11-26 19:40:48] 2025-11-27 00:40:47,591 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 19:40:48] 2025-11-27 00:40:47,912 [wrapper] ==== pilot stdout END ====
[2025-11-26 19:40:48] 2025-11-27 00:40:47,916 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 19:40:48] 2025-11-27 00:40:47,919 [wrapper] pilotpid: 3107649
[2025-11-26 19:40:48] 2025-11-27 00:40:47,923 [wrapper] Pilot exit status: 0
[2025-11-26 19:40:48] 2025-11-27 00:40:47,942 [wrapper] pandaids: 6897759728
[2025-11-26 19:40:48] 2025-11-27 00:40:48,032 [wrapper] cleanup supervisor_pilot 3557575 3107650
[2025-11-26 19:40:48] 2025-11-27 00:40:48,035 [wrapper] Test setup, not cleaning
[2025-11-26 19:40:48] 2025-11-27 00:40:48,039 [wrapper] apfmon messages muted
[2025-11-26 19:40:48] 2025-11-27 00:40:48,041 [wrapper] ==== wrapper stdout END ====
[2025-11-26 19:40:48] 2025-11-27 00:40:48,044 [wrapper] ==== wrapper stderr END ====
[2025-11-26 19:40:48]  *** Error codes and diagnostics ***
[2025-11-26 19:40:48]     "exeErrorCode": 0,
[2025-11-26 19:40:48]     "exeErrorDiag": "",
[2025-11-26 19:40:48]     "pilotErrorCode": 0,
[2025-11-26 19:40:48]     "pilotErrorDiag": "",
[2025-11-26 19:40:48]  *** Listing of results directory ***
[2025-11-26 19:40:48] total 1341768
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 19:40:48] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 19:40:48] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:01 run_atlas
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:01 job.xml
[2025-11-26 19:40:48] -rw-r--r--. 2 boincer umatlas 409871107 Nov 26 00:01 EVNT.47483658._002324.pool.root.1
[2025-11-26 19:40:48] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:01 shared
[2025-11-26 19:40:48] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 00:01 input.tar.gz
[2025-11-26 19:40:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:01 boinc_lockfile
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:01 pandaJob.out
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas        57 Nov 26 00:01 setup.sh.local
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas    991877 Nov 26 00:02 agis_schedconf.cvmfs.json
[2025-11-26 19:40:48] drwx------. 5 boincer umatlas      4096 Nov 26 00:02 pilot3
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas       533 Nov 26 19:31 boinc_task_state.xml
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas 939055423 Nov 26 19:39 HITS.47556161._003063.pool.root.1
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas      1058 Nov 26 19:39 memory_monitor_summary.json
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas   1516240 Nov 26 19:39 agis_ddmendpoints.agis.ALL.json
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas   2323322 Nov 26 19:39 log.47556161._003063.job.log.tgz.1
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas      6843 Nov 26 19:39 init_data.xml
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas      8616 Nov 26 19:40 heartbeat.json
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas        95 Nov 26 19:40 pilot_heartbeat.json
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 19:40 boinc_mmap_file
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas        29 Nov 26 19:40 wrapper_checkpoint.txt
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas      5010 Nov 26 19:40 pilotlog.txt
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas   8236019 Nov 26 19:40 log.47556161._003063.job.log.1
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas       353 Nov 26 19:40 output.list
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas       620 Nov 26 19:40 runtime_log
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas  10577920 Nov 26 19:40 result.tar.gz
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas      9343 Nov 26 19:40 runtime_log.err
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas       662 Nov 26 19:40 Ph8MDmXbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm1iJKDmWMulEn.diag
[2025-11-26 19:40:48] -rw-r--r--. 1 boincer umatlas     21230 Nov 26 19:40 stderr.txt
[2025-11-26 19:40:48] HITS file was successfully produced:
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas 939055423 Nov 26 19:39 shared/HITS.pool.root.1
[2025-11-26 19:40:48]  *** Contents of shared directory: ***
[2025-11-26 19:40:48] total 1328252
[2025-11-26 19:40:48] -rw-r--r--. 2 boincer umatlas 409871107 Nov 26 00:01 ATLAS.root_0
[2025-11-26 19:40:48] -rw-r--r--. 2 boincer umatlas    590107 Nov 26 00:01 input.tar.gz
[2025-11-26 19:40:48] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:01 start_atlas.sh
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas 939055423 Nov 26 19:39 HITS.pool.root.1
[2025-11-26 19:40:48] -rw-------. 1 boincer umatlas  10577920 Nov 26 19:40 result.tar.gz
19:40:49 (3100084): run_atlas exited; CPU time 240354.739103
19:40:49 (3100084): called boinc_finish(0)

</stderr_txt>
]]>

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