Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:43 (4046975): wrapper (7.7.26015): starting
00:02:43 (4046975): wrapper: running run_atlas (--nthreads 9)
[2025-11-26 00:02:43] Arguments: --nthreads 9
[2025-11-26 00:02:43] Threads: 9
[2025-11-26 00:02:43] Checking for CVMFS
[2025-11-26 00:02:44] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-26 00:02:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-26 00:02:44] Running cvmfs_config stat atlas.cern.ch
[2025-11-26 00:02:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-26 00:02:46] 2.13.3.0 12359 29606 370732 153309 0 443 29201408 32935937 34138 16776704 0 181342832 99.619 176168697 32749 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-26 00:02:46] CVMFS is ok
[2025-11-26 00:02:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-26 00:02:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-26 00:02:46] Further information can be found at the LHC@home message board.
[2025-11-26 00:02:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-26 00:02:46] Checking for apptainer binary...
[2025-11-26 00:02:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-26 00:02:46] Running /usr/bin/apptainer --version
[2025-11-26 00:02:46] apptainer version 1.4.4-1.el9
[2025-11-26 00:02:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-26 00:02:46] c6-12-29-3.aglt2.org
[2025-11-26 00:02:46] apptainer works
[2025-11-26 00:02:47] Set ATHENA_PROC_NUMBER=9
[2025-11-26 00:02:47] Set ATHENA_CORE_NUMBER=9
[2025-11-26 00:02:47] Starting ATLAS job with PandaID=6897863873
[2025-11-26 00:02:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-26 23:33:53]  *** The last 200 lines of the pilot log: ***
[2025-11-26 23:33:53] 2025-11-27 04:32:48,553 | INFO     | time since job start (84528s) is within the limit (172800.0s)
[2025-11-26 23:33:53] 2025-11-27 04:32:49,471 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-26 23:33:53] 2025-11-27 04:32:49,477 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2613.9925104166655
[2025-11-26 23:33:53] 2025-11-27 04:32:49,496 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6897863873/memory_monitor_summary.json (trf name=prmon)
[2025-11-26 23:33:53] 2025-11-27 04:32:49,497 | INFO     | extracted standard info from prmon json
[2025-11-26 23:33:53] 2025-11-27 04:32:49,497 | INFO     | extracted standard memory fields from prmon json
[2025-11-26 23:33:53] 2025-11-27 04:32:49,497 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-26 23:33:53] 2025-11-27 04:32:49,546 | INFO     | fitting pss+swap vs Time
[2025-11-26 23:33:53] 2025-11-27 04:32:49,548 | INFO     | sum of square deviations: 820210424355.3536
[2025-11-26 23:33:53] 2025-11-27 04:32:49,659 | INFO     | sum of deviations: 4427629409174.303
[2025-11-26 23:33:53] 2025-11-27 04:32:49,660 | INFO     | mean x: 1764175763.1836586
[2025-11-26 23:33:53] 2025-11-27 04:32:49,660 | INFO     | mean y: 2999263.9869848154
[2025-11-26 23:33:53] 2025-11-27 04:32:49,660 | INFO     | intersect: -9520308731.231014
[2025-11-26 23:33:53] 2025-11-27 04:32:49,666 | INFO     | chi2: 15.776922728463788
[2025-11-26 23:33:53] 2025-11-27 04:32:49,812 | INFO     | sum of square deviations: 811347498691.9875
[2025-11-26 23:33:53] 2025-11-27 04:32:49,883 | INFO     | sum of deviations: 4937433765950.863
[2025-11-26 23:33:53] 2025-11-27 04:32:49,884 | INFO     | mean x: 1764175610.6952105
[2025-11-26 23:33:53] 2025-11-27 04:32:49,884 | INFO     | mean y: 3008033.478229318
[2025-11-26 23:33:53] 2025-11-27 04:32:49,884 | INFO     | intersect: -10732836032.542969
[2025-11-26 23:33:53] 2025-11-27 04:32:49,886 | INFO     | chi2: 12.31285877579421
[2025-11-26 23:33:53] 2025-11-27 04:32:49,886 | INFO     | current chi2=12.31285877579421 (change=21.9565248070837 %)
[2025-11-26 23:33:53] 2025-11-27 04:32:49,886 | INFO     | right removable region: 1377
[2025-11-26 23:33:53] 2025-11-27 04:32:49,888 | INFO     | sum of square deviations: 811344812861.9885
[2025-11-26 23:33:53] 2025-11-27 04:32:49,954 | INFO     | sum of deviations: 3839508228900.8345
[2025-11-26 23:33:53] 2025-11-27 04:32:49,954 | INFO     | mean x: 1764175915.6952105
[2025-11-26 23:33:53] 2025-11-27 04:32:49,955 | INFO     | mean y: 3009379.7162554427
[2025-11-26 23:33:53] 2025-11-27 04:32:49,955 | INFO     | intersect: -8345559364.621823
[2025-11-26 23:33:53] 2025-11-27 04:32:49,957 | INFO     | chi2: 11.429090845210562
[2025-11-26 23:33:53] 2025-11-27 04:32:49,957 | INFO     | current chi2=11.429090845210562 (change=27.558174417683663 %)
[2025-11-26 23:33:53] 2025-11-27 04:32:49,959 | INFO     | sum of square deviations: 802543295593.2535
[2025-11-26 23:33:53] 2025-11-27 04:32:50,025 | INFO     | sum of deviations: 3353109028534.31
[2025-11-26 23:33:53] 2025-11-27 04:32:50,025 | INFO     | mean x: 1764176068.2068462
[2025-11-26 23:33:53] 2025-11-27 04:32:50,025 | INFO     | mean y: 3017806.604515659
[2025-11-26 23:33:53] 2025-11-27 04:32:50,025 | INFO     | intersect: -7367892566.343922
[2025-11-26 23:33:53] 2025-11-27 04:32:50,027 | INFO     | chi2: 8.56597407159968
[2025-11-26 23:33:53] 2025-11-27 04:32:50,028 | INFO     | current chi2=8.56597407159968 (change=25.051133221245593 %)
[2025-11-26 23:33:53] 2025-11-27 04:32:50,029 | INFO     | sum of square deviations: 793805807137.5194
[2025-11-26 23:33:53] 2025-11-27 04:32:50,081 | INFO     | sum of deviations: 3070621296078.054
[2025-11-26 23:33:53] 2025-11-27 04:32:50,082 | INFO     | mean x: 1764176220.7171052
[2025-11-26 23:33:53] 2025-11-27 04:32:50,082 | INFO     | mean y: 3022733.9122807016
[2025-11-26 23:33:53] 2025-11-27 04:32:50,082 | INFO     | intersect: -6821211889.543901
[2025-11-26 23:33:53] 2025-11-27 04:32:50,084 | INFO     | chi2: 7.589644781497171
[2025-11-26 23:33:53] 2025-11-27 04:32:50,084 | INFO     | current chi2=7.589644781497171 (change=11.397761444778471 %)
[2025-11-26 23:33:53] 2025-11-27 04:32:50,084 | INFO     | left removable region: 30
[2025-11-26 23:33:53] 2025-11-27 04:32:50,086 | INFO     | sum of square deviations: 757806731977.3369
[2025-11-26 23:33:53] 2025-11-27 04:32:50,153 | INFO     | sum of deviations: 3308843023959.1875
[2025-11-26 23:33:53] 2025-11-27 04:32:50,153 | INFO     | mean x: 1764176495.233853
[2025-11-26 23:33:53] 2025-11-27 04:32:50,153 | INFO     | mean y: 3040323.307349666
[2025-11-26 23:33:53] 2025-11-27 04:32:50,153 | INFO     | intersect: -7699956816.947506
[2025-11-26 23:33:53] 2025-11-27 04:32:50,155 | INFO     | chi2: 2.9894490822479303
[2025-11-26 23:33:53] 2025-11-27 04:32:50,155 | INFO     | current memory leak: 4.37 B/s (using 1347 data points, chi2=2.99)
[2025-11-26 23:33:53] 2025-11-27 04:32:50,157 | INFO     | could have reported an average CPU frequency of 2592 MHz (49 samples)
[2025-11-26 23:33:53] 2025-11-27 04:32:50,157 | INFO     | ..............................
[2025-11-26 23:33:53] 2025-11-27 04:32:50,157 | INFO     | . Timing measurements:
[2025-11-26 23:33:53] 2025-11-27 04:32:50,157 | INFO     | . get job = 0 s
[2025-11-26 23:33:53] 2025-11-27 04:32:50,157 | INFO     | . initial setup = 7 s
[2025-11-26 23:33:53] 2025-11-27 04:32:50,157 | INFO     | . payload setup = 55 s
[2025-11-26 23:33:53] 2025-11-27 04:32:50,157 | INFO     | . stage-in = 0 s
[2025-11-26 23:33:53] 2025-11-27 04:32:50,157 | INFO     | . payload execution = 84360 s
[2025-11-26 23:33:53] 2025-11-27 04:32:50,157 | INFO     | . stage-out = 11 s
[2025-11-26 23:33:53] 2025-11-27 04:32:50,157 | INFO     | . log creation = 1 s
[2025-11-26 23:33:53] 2025-11-27 04:32:50,158 | INFO     | ..............................
[2025-11-26 23:33:53] 2025-11-27 04:32:52,816 | INFO     | 
[2025-11-26 23:33:53] 2025-11-27 04:32:52,816 | INFO     | job summary report
[2025-11-26 23:33:53] 2025-11-27 04:32:52,816 | INFO     | --------------------------------------------------
[2025-11-26 23:33:53] 2025-11-27 04:32:52,816 | INFO     | PanDA job id: 6897863873
[2025-11-26 23:33:53] 2025-11-27 04:32:52,816 | INFO     | task id: 47556161
[2025-11-26 23:33:53] 2025-11-27 04:32:52,816 | INFO     | errors: (none)
[2025-11-26 23:33:53] 2025-11-27 04:32:52,816 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | pilot state: finished 
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | transexitcode: 0
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | exeerrorcode: 0
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | exeerrordiag: 
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | exitcode: 0
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | exitmsg: OK
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | cpuconsumptiontime: 277691 s
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | nevents: 1000
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | neventsw: 0
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | pid: 4093802
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | pgrp: 4093802
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | corecount: 9
[2025-11-26 23:33:53] 2025-11-27 04:32:52,817 | INFO     | event service: False
[2025-11-26 23:33:53] 2025-11-27 04:32:52,818 | INFO     | sizes: {0: 2283437, 1: 2284038, 2: 2284321, 3: 2284321, 14: 2284349, 25: 2284377, 36: 2284795, 47: 2284823, 84420: 2347119, 84432: 2356141, 84433: 2356197, 84453: 
[2025-11-26 23:33:53] 2025-11-27 04:32:52,818 | INFO     | --------------------------------------------------
[2025-11-26 23:33:53] 2025-11-27 04:32:52,818 | INFO     | 
[2025-11-26 23:33:53] 2025-11-27 04:32:52,818 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-26 23:33:53] 2025-11-27 04:32:53,008 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,009 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,009 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,009 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,009 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,009 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,009 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,009 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,009 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,009 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,009 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,009 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,010 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,010 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,010 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,010 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,010 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-26 23:33:53] 2025-11-27 04:32:53,010 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,010 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-26 23:33:53] 2025-11-27 04:32:53,010 | INFO     | job 6897863873 has completed (purged errors)
[2025-11-26 23:33:53] 2025-11-27 04:32:53,011 | INFO     | overall cleanup function is called
[2025-11-26 23:33:53] 2025-11-27 04:32:54,400 | INFO     | --- collectZombieJob: --- 10, [4093802]
[2025-11-26 23:33:53] 2025-11-27 04:32:54,414 | INFO     | zombie collector waiting for pid 4093802
[2025-11-26 23:33:53] 2025-11-27 04:32:54,415 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-26 23:33:53] 2025-11-27 04:32:54,415 | INFO     | collected zombie processes
[2025-11-26 23:33:53] 2025-11-27 04:32:54,415 | INFO     | will attempt to kill all subprocesses of pid=4093802
[2025-11-26 23:33:53] 2025-11-27 04:32:55,469 | INFO     | PID=4054637 has CPU usage=12.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-26 23:33:53] 2025-11-27 04:32:55,475 | INFO     | .. there are 53 such processes running
[2025-11-26 23:33:53] 2025-11-27 04:32:55,823 | INFO     | process IDs to be killed: [4093802] (in reverse order)
[2025-11-26 23:33:53] 2025-11-27 04:32:56,030 | WARNING  | found no corresponding commands to process id(s)
[2025-11-26 23:33:53] 2025-11-27 04:32:56,031 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-26 23:33:53] 2025-11-27 04:32:56,061 | INFO     | did not find any defunct processes belonging to 4093802
[2025-11-26 23:33:53] 2025-11-27 04:32:56,123 | INFO     | did not find any defunct processes belonging to 4093802
[2025-11-26 23:33:53] 2025-11-27 04:32:56,126 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-26 23:33:53] 2025-11-27 04:32:56,126 | INFO     | ready for new job
[2025-11-26 23:33:53] 2025-11-27 04:32:56,126 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-26 23:33:53] 2025-11-27 04:32:56,134 | INFO     | ***************************************
[2025-11-26 23:33:53] 2025-11-27 04:32:56,134 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-26 23:33:53] 2025-11-27 04:32:56,134 | INFO     | ***************************************
[2025-11-26 23:33:53] 2025-11-27 04:32:56,134 | INFO     | 
[2025-11-26 23:33:53] 2025-11-27 04:32:56,141 | INFO     | architecture information:
[2025-11-26 23:33:53] 2025-11-27 04:32:56,141 | INFO     | executing command: cat /etc/os-release
[2025-11-26 23:33:53] 2025-11-27 04:32:56,182 | INFO     | cat /etc/os-release:
[2025-11-26 23:33:53] NAME="CentOS Linux"
[2025-11-26 23:33:53] VERSION="7 (Core)"
[2025-11-26 23:33:53] ID="centos"
[2025-11-26 23:33:53] ID_LIKE="rhel fedora"
[2025-11-26 23:33:53] VERSION_ID="7"
[2025-11-26 23:33:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-26 23:33:53] ANSI_COLOR="0;31"
[2025-11-26 23:33:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-26 23:33:53] HOME_URL="https://www.centos.org/"
[2025-11-26 23:33:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-26 23:33:53] 
[2025-11-26 23:33:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-26 23:33:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-26 23:33:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-26 23:33:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-26 23:33:53] 
[2025-11-26 23:33:53] 2025-11-27 04:32:56,182 | INFO     | ***************************************
[2025-11-26 23:33:53] 2025-11-27 04:32:56,692 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-26 23:33:53] 2025-11-27 04:32:56,745 | INFO     | sufficient remaining disk space (84293976064 B)
[2025-11-26 23:33:53] 2025-11-27 04:32:56,746 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-26 23:33:53] 2025-11-27 04:32:56,746 | INFO     | current server update state: UPDATING_FINAL
[2025-11-26 23:33:53] 2025-11-27 04:32:56,747 | INFO     | update_server=False
[2025-11-26 23:33:53] 2025-11-27 04:32:56,747 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-26 23:33:53] 2025-11-27 04:32:57,229 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-26 23:33:53] 2025-11-27 04:32:57,460 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:33:53] 2025-11-27 04:32:57,460 | INFO     | aborting loop
[2025-11-26 23:33:53] 2025-11-27 04:32:57,470 | INFO     | all job control threads have been joined
[2025-11-26 23:33:53] 2025-11-27 04:32:57,554 | INFO     | all payload control threads have been joined
[2025-11-26 23:33:53] 2025-11-27 04:32:57,611 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-26 23:33:53] 2025-11-27 04:32:57,639 | INFO     | all data control threads have been joined
[2025-11-26 23:33:53] 2025-11-27 04:32:57,753 | INFO     | [job] retrieve thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:57,852 | INFO     | [payload] failed_post thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:57,882 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-26 23:33:53] 2025-11-27 04:32:58,236 | INFO     | [payload] execute_payloads thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:58,466 | INFO     | [job] job monitor thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:58,476 | INFO     | [job] control thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:58,560 | INFO     | [payload] control thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:58,646 | INFO     | [data] control thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:58,671 | INFO     | [payload] validate_pre thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:58,775 | INFO     | [payload] validate_post thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:58,800 | INFO     | [data] copytool_in thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:58,811 | INFO     | [job] create_data_payload thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:58,814 | INFO     | [job] validate thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:58,888 | INFO     | [job] queue monitor thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:58,963 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:32:59,236 | INFO     | [data] copytool_out thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:33:01,639 | INFO     | [data] queue_monitor thread has finished
[2025-11-26 23:33:53] 2025-11-27 04:33:30,133 | INFO     | PID=4054637 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-26 23:33:53] 2025-11-27 04:33:30,134 | INFO     | .. there are 52 such processes running
[2025-11-26 23:33:53] 2025-11-27 04:33:30,135 | INFO     | found 0 job(s) in 20 queues
[2025-11-26 23:33:53] 2025-11-27 04:33:30,135 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-26 23:33:53] 2025-11-27 04:33:30,135 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-26 23:33:53] 2025-11-27 04:33:45,046 | INFO     | [monitor] cgroup control has ended
[2025-11-26 23:33:53] 2025-11-27 04:33:46,877 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139671012984640)>', '<ExcThread(monitor, started 139670365128448)>']
[2025-11-26 23:33:53] 2025-11-27 04:33:47,285 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-26 23:33:53] 2025-11-27 04:33:47,285 | INFO     | [monitor] control thread has ended
[2025-11-26 23:33:53] 2025-11-27 04:33:51,903 | INFO     | all workflow threads have been joined
[2025-11-26 23:33:53] 2025-11-27 04:33:51,903 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-26 23:33:53] 2025-11-27 04:33:51,904 | INFO     | traces error code: 0
[2025-11-26 23:33:53] 2025-11-27 04:33:51,904 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-26 23:33:53] 2025-11-27 04:33:53,026 [wrapper] ==== pilot stdout END ====
[2025-11-26 23:33:53] 2025-11-27 04:33:53,029 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-26 23:33:53] 2025-11-27 04:33:53,033 [wrapper] pilotpid: 4054637
[2025-11-26 23:33:53] 2025-11-27 04:33:53,056 [wrapper] Pilot exit status: 0
[2025-11-26 23:33:53] 2025-11-27 04:33:53,067 [wrapper] pandaids: 6897863873
[2025-11-26 23:33:53] 2025-11-27 04:33:53,203 [wrapper] cleanup supervisor_pilot 2336024 4054638
[2025-11-26 23:33:53] 2025-11-27 04:33:53,233 [wrapper] Test setup, not cleaning
[2025-11-26 23:33:53] 2025-11-27 04:33:53,237 [wrapper] apfmon messages muted
[2025-11-26 23:33:53] 2025-11-27 04:33:53,240 [wrapper] ==== wrapper stdout END ====
[2025-11-26 23:33:53] 2025-11-27 04:33:53,244 [wrapper] ==== wrapper stderr END ====
[2025-11-26 23:33:53]  *** Error codes and diagnostics ***
[2025-11-26 23:33:53]     "exeErrorCode": 0,
[2025-11-26 23:33:53]     "exeErrorDiag": "",
[2025-11-26 23:33:53]     "pilotErrorCode": 0,
[2025-11-26 23:33:53]     "pilotErrorDiag": "",
[2025-11-26 23:33:53]  *** Listing of results directory ***
[2025-11-26 23:33:53] total 1333296
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 25 11:48 pilot3.tar.gz
[2025-11-26 23:33:53] -rwx------. 1 boincer umatlas     36292 Nov 25 12:01 runpilot2-wrapper.sh
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 25 12:02 queuedata.json
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas       100 Nov 26 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-26 23:33:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 26 00:02 run_atlas
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas       105 Nov 26 00:02 job.xml
[2025-11-26 23:33:53] -rw-r--r--. 2 boincer umatlas 408149950 Nov 26 00:02 EVNT.47483658._002337.pool.root.1
[2025-11-26 23:33:53] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:02 input.tar.gz
[2025-11-26 23:33:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 23:33:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 26 00:02 shared
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas         0 Nov 26 00:02 boinc_lockfile
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas      2786 Nov 26 00:02 pandaJob.out
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas        57 Nov 26 00:02 setup.sh.local
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas    991877 Nov 26 00:03 agis_schedconf.cvmfs.json
[2025-11-26 23:33:53] drwx------. 5 boincer umatlas      4096 Nov 26 00:04 pilot3
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas       533 Nov 26 23:15 boinc_task_state.xml
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas      6882 Nov 26 23:28 init_data.xml
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas 929627093 Nov 26 23:30 HITS.47556161._003193.pool.root.1
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas      1059 Nov 26 23:32 memory_monitor_summary.json
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas   1516240 Nov 26 23:32 agis_ddmendpoints.agis.ALL.json
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas   2462440 Nov 26 23:32 log.47556161._003193.job.log.tgz.1
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas      8622 Nov 26 23:32 heartbeat.json
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas        95 Nov 26 23:33 pilot_heartbeat.json
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 26 23:33 boinc_mmap_file
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas      4824 Nov 26 23:33 pilotlog.txt
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas        29 Nov 26 23:33 wrapper_checkpoint.txt
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas   9338475 Nov 26 23:33 log.47556161._003193.job.log.1
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas       353 Nov 26 23:33 output.list
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas       620 Nov 26 23:33 runtime_log
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas  11816960 Nov 26 23:33 result.tar.gz
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas      9353 Nov 26 23:33 runtime_log.err
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas       662 Nov 26 23:33 DKxKDmYbBi8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6dMKDmkff6Sm.diag
[2025-11-26 23:33:53] -rw-r--r--. 1 boincer umatlas     21447 Nov 26 23:33 stderr.txt
[2025-11-26 23:33:53] HITS file was successfully produced:
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas 929627093 Nov 26 23:30 shared/HITS.pool.root.1
[2025-11-26 23:33:53]  *** Contents of shared directory: ***
[2025-11-26 23:33:53] total 1318568
[2025-11-26 23:33:53] -rw-r--r--. 2 boincer umatlas 408149950 Nov 26 00:02 ATLAS.root_0
[2025-11-26 23:33:53] -rw-r--r--. 2 boincer umatlas    590104 Nov 26 00:02 input.tar.gz
[2025-11-26 23:33:53] -rw-r--r--. 2 boincer umatlas     15847 Nov 26 00:02 start_atlas.sh
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas 929627093 Nov 26 23:30 HITS.pool.root.1
[2025-11-26 23:33:53] -rw-------. 1 boincer umatlas  11816960 Nov 26 23:33 result.tar.gz
23:33:55 (4046975): run_atlas exited; CPU time 280994.028060
23:33:55 (4046975): called boinc_finish(0)

</stderr_txt>
]]>

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