Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
20:29:57 (708611): wrapper (7.7.26015): starting
20:29:57 (708611): wrapper: running run_atlas (--nthreads 12)
[2025-11-25 20:29:57] Arguments: --nthreads 12
[2025-11-25 20:29:57] Threads: 12
[2025-11-25 20:29:57] Checking for CVMFS
[2025-11-25 20:29:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-25 20:29:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-25 20:29:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-25 20:29:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-25 20:29:58] 2.11.5.0 3742376 27607 226168 153309 3 289 30552624 45568000 16460 130560 0 262834465 99.781 155591220 22095 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-25 20:29:58] CVMFS is ok
[2025-11-25 20:29:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-25 20:29:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-25 20:29:58] Further information can be found at the LHC@home message board.
[2025-11-25 20:29:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-25 20:29:58] Checking for apptainer binary...
[2025-11-25 20:29:58] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-25 20:29:58] Running /usr/bin/apptainer --version
[2025-11-25 20:29:58] apptainer version 1.4.1-1.el9
[2025-11-25 20:29:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-25 20:29:59] wns0066.triumf.lcg
[2025-11-25 20:29:59] apptainer works
[2025-11-25 20:29:59] Set ATHENA_PROC_NUMBER=12
[2025-11-25 20:29:59] Set ATHENA_CORE_NUMBER=12
[2025-11-25 20:29:59] Starting ATLAS job with PandaID=6897663410
[2025-11-25 20:29:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-25 20:35:35]  *** The last 200 lines of the pilot log: ***
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | ..............................
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . Timing measurements:
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . get job = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . initial setup = 3 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . payload setup = 19 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . stage-in = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . payload execution = 94 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . stage-out = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . log creation = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | ..............................
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 20:35:35] 2025-11-26 04:35:03,204 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897663410/pilotlog.txt
[2025-11-25 20:35:35] 2025-11-26 04:35:03,276 | INFO     | monitor loop #74: job 0:6897663410 is in state 'failed'
[2025-11-25 20:35:35] 2025-11-26 04:35:03,276 | INFO     | will abort job monitoring soon since job state=failed (job is still in queue)
[2025-11-25 20:35:35] 2025-11-26 04:35:03,277 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-25 20:35:35] - Log from pilotlog.txt -
[2025-11-25 20:35:35] 2025-11-26 04:35:03,184 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897663410/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:35:35] 2025-11-26 04:35:03,185 | INFO     | extracted standard info from prmon json
[2025-11-25 20:35:35] 2025-11-26 04:35:03,185 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:35:35] 2025-11-26 04:35:03,185 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:35:35] 2025-11-26 04:35:03,186 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 20:35:35] 2025-11-26 04:35:03,186 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 20:35:35] 2025-11-26 04:35:03,186 | WARNING  | wrong length of table data, x=[1764131482.0, 1764131543.0], y=[1600.0, 395697.0] (must be same and length>=4)
[2025-11-25 20:35:35] 2025-11-26 04:35:03,187 | INFO     | could have reported an average CPU frequency of 2691 MHz (4 samples)
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | ..............................
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . Timing measurements:
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . get job = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . initial setup = 3 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . payload setup = 19 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . stage-in = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . payload execution = 94 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . stage-out = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . log creation = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | ..............................
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 20:35:35] 2025-11-26 04:35:03,204 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897663410/pilotlog.txt
[2025-11-25 20:35:35] 2025-11-26 04:35:03,277 | WARNING  | 
[2025-11-25 20:35:35] [begin log extracts]
[2025-11-25 20:35:35] - Log from pilotlog.txt -
[2025-11-25 20:35:35] 2025-11-26 04:35:03,184 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6897663410/memory_monitor_summary.json (trf name=prmon)
[2025-11-25 20:35:35] 2025-11-26 04:35:03,185 | INFO     | extracted standard info from prmon json
[2025-11-25 20:35:35] 2025-11-26 04:35:03,185 | INFO     | extracted standard memory fields from prmon json
[2025-11-25 20:35:35] 2025-11-26 04:35:03,185 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-25 20:35:35] 2025-11-26 04:35:03,186 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-25 20:35:35] 2025-11-26 04:35:03,186 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-25 20:35:35] 2025-11-26 04:35:03,186 | WARNING  | wrong length of table data, x=[1764131482.0, 1764131543.0], y=[1600.0, 395697.0] (must be same and length>=4)
[2025-11-25 20:35:35] 2025-11-26 04:35:03,187 | INFO     | could have reported an average CPU frequency of 2691 MHz (4 samples)
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | ..............................
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . Timing measurements:
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . get job = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . initial setup = 3 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . payload setup = 19 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . stage-in = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . payload execution = 94 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . stage-out = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | . log creation = 0 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | ..............................
[2025-11-25 20:35:35] 2025-11-26 04:35:03,203 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-25 20:35:35] 2025-11-26 04:35:03,204 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6897663410/pilotlog.txt
[2025-11-25 20:35:35] [end log extracts]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,277 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-25 20:35:35] 2025-11-26 04:35:03,277 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | 
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | job summary report
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | --------------------------------------------------
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | PanDA job id: 6897663410
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | task id: 47556161
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-25 20:32:40,889 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | pilot state: failed 
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | transexitcode: 65
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | exeerrorcode: 65
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-25 20:35:35] 2025-11-26 04:35:03,501 | INFO     | exitcode: 65
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | cpuconsumptiontime: 41 s
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | nevents: 0
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | neventsw: 0
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | pid: 719451
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | pgrp: 719451
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | corecount: 12
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | event service: False
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | sizes: {0: 2284262, 1: 2284290, 12: 2284580, 114: 2309972, 115: 2309948, 116: 2314450, 251: 2314588}
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | --------------------------------------------------
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | 
[2025-11-25 20:35:35] 2025-11-26 04:35:03,502 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-25 20:35:35] 2025-11-26 04:35:03,597 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,597 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,597 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,597 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,597 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,597 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,597 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,597 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | job 6897663410 has completed (purged errors)
[2025-11-25 20:35:35] 2025-11-26 04:35:03,598 | INFO     | overall cleanup function is called
[2025-11-25 20:35:35] 2025-11-26 04:35:04,608 | INFO     | --- collectZombieJob: --- 10, [719451]
[2025-11-25 20:35:35] 2025-11-26 04:35:04,608 | INFO     | zombie collector waiting for pid 719451
[2025-11-25 20:35:35] 2025-11-26 04:35:04,608 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-25 20:35:35] 2025-11-26 04:35:04,608 | INFO     | collected zombie processes
[2025-11-25 20:35:35] 2025-11-26 04:35:04,608 | INFO     | will attempt to kill all subprocesses of pid=719451
[2025-11-25 20:35:35] 2025-11-26 04:35:05,269 | INFO     | process IDs to be killed: [719451] (in reverse order)
[2025-11-25 20:35:35] 2025-11-26 04:35:05,340 | WARNING  | found no corresponding commands to process id(s)
[2025-11-25 20:35:35] 2025-11-26 04:35:05,340 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-25 20:35:35] 2025-11-26 04:35:05,349 | INFO     | did not find any defunct processes belonging to 719451
[2025-11-25 20:35:35] 2025-11-26 04:35:05,374 | INFO     | did not find any defunct processes belonging to 719451
[2025-11-25 20:35:35] 2025-11-26 04:35:05,375 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-25 20:35:35] 2025-11-26 04:35:05,375 | INFO     | ready for new job
[2025-11-25 20:35:35] 2025-11-26 04:35:05,375 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-25 20:35:35] 2025-11-26 04:35:05,376 | INFO     | ***************************************
[2025-11-25 20:35:35] 2025-11-26 04:35:05,376 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-25 20:35:35] 2025-11-26 04:35:05,376 | INFO     | ***************************************
[2025-11-25 20:35:35] 2025-11-26 04:35:05,377 | INFO     | 
[2025-11-25 20:35:35] 2025-11-26 04:35:05,383 | INFO     | architecture information:
[2025-11-25 20:35:35] 2025-11-26 04:35:05,388 | INFO     | executing command: cat /etc/os-release
[2025-11-25 20:35:35] 2025-11-26 04:35:05,455 | INFO     | cat /etc/os-release:
[2025-11-25 20:35:35] NAME="CentOS Linux"
[2025-11-25 20:35:35] VERSION="7 (Core)"
[2025-11-25 20:35:35] ID="centos"
[2025-11-25 20:35:35] ID_LIKE="rhel fedora"
[2025-11-25 20:35:35] VERSION_ID="7"
[2025-11-25 20:35:35] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-25 20:35:35] ANSI_COLOR="0;31"
[2025-11-25 20:35:35] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-25 20:35:35] HOME_URL="https://www.centos.org/"
[2025-11-25 20:35:35] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-25 20:35:35] 
[2025-11-25 20:35:35] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-25 20:35:35] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-25 20:35:35] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-25 20:35:35] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-25 20:35:35] 
[2025-11-25 20:35:35] 2025-11-26 04:35:05,455 | INFO     | ***************************************
[2025-11-25 20:35:35] 2025-11-26 04:35:05,959 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-25 20:35:35] 2025-11-26 04:35:05,972 | INFO     | sufficient remaining disk space (1874671435776 B)
[2025-11-25 20:35:35] 2025-11-26 04:35:05,972 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-25 20:35:35] 2025-11-26 04:35:05,972 | INFO     | current server update state: UPDATING_FINAL
[2025-11-25 20:35:35] 2025-11-26 04:35:05,972 | INFO     | update_server=False
[2025-11-25 20:35:35] 2025-11-26 04:35:05,972 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-25 20:35:35] 2025-11-26 04:35:05,972 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-25 20:35:35] 2025-11-26 04:35:06,279 | INFO     | all data control threads have been joined
[2025-11-25 20:35:35] 2025-11-26 04:35:06,509 | INFO     | all payload control threads have been joined
[2025-11-25 20:35:35] 2025-11-26 04:35:06,575 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-25 20:35:35] 2025-11-26 04:35:06,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:35:35] 2025-11-26 04:35:06,787 | INFO     | aborting loop
[2025-11-25 20:35:35] 2025-11-26 04:35:06,980 | INFO     | [job] retrieve thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:07,108 | INFO     | [job] validate thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:07,285 | INFO     | [data] control thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:07,429 | INFO     | [payload] execute_payloads thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:07,515 | INFO     | [payload] control thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:07,599 | INFO     | [payload] validate_post thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:07,606 | INFO     | all job control threads have been joined
[2025-11-25 20:35:35] 2025-11-26 04:35:07,767 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:07,787 | INFO     | [job] create_data_payload thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:07,793 | INFO     | [job] job monitor thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:07,929 | INFO     | [payload] failed_post thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:08,194 | INFO     | [payload] validate_pre thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:08,243 | INFO     | [data] copytool_in thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:08,518 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-25 20:35:35] 2025-11-26 04:35:08,582 | INFO     | [data] copytool_out thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:08,612 | INFO     | [job] control thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:09,524 | INFO     | [job] queue monitor thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:09,981 | INFO     | [data] queue_monitor thread has finished
[2025-11-25 20:35:35] 2025-11-26 04:35:25,188 | INFO     | [monitor] cgroup control has ended
[2025-11-25 20:35:35] 2025-11-26 04:35:27,044 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139806111844160)>', '<ExcThread(monitor, started 139805723707136)>']
[2025-11-25 20:35:35] 2025-11-26 04:35:32,070 | INFO     | all workflow threads have been joined
[2025-11-25 20:35:35] 2025-11-26 04:35:32,070 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-25 20:35:35] 2025-11-26 04:35:32,070 | INFO     | traces error code: 0
[2025-11-25 20:35:35] 2025-11-26 04:35:32,071 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-25 20:35:35] 2025-11-26 04:35:35,411 | INFO     | PID=712732 has CPU usage=1.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-25 20:35:35] 2025-11-26 04:35:35,411 | INFO     | .. there are 21 such processes running
[2025-11-25 20:35:35] 2025-11-26 04:35:35,412 | INFO     | found 0 job(s) in 20 queues
[2025-11-25 20:35:35] 2025-11-26 04:35:35,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-25 20:35:35] 2025-11-26 04:35:35,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-25 20:35:35] 2025-11-26 04:35:35,412 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-25 20:35:35] 2025-11-26 04:35:35,412 | CRITICAL | thread 'MainThread' is not alive
[2025-11-25 20:35:35] 2025-11-26 04:35:35,412 | INFO     | [monitor] control thread has ended
[2025-11-25 20:35:35] 2025-11-26 04:35:35,532 [wrapper] ==== pilot stdout END ====
[2025-11-25 20:35:35] 2025-11-26 04:35:35,579 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-25 20:35:35] 2025-11-26 04:35:35,615 [wrapper] pilotpid: 712732
[2025-11-25 20:35:35] 2025-11-26 04:35:35,617 [wrapper] Pilot exit status: 0
[2025-11-25 20:35:35] 2025-11-26 04:35:35,741 [wrapper] pandaids: 6897663410
[2025-11-25 20:35:35] 2025-11-26 04:35:35,883 [wrapper] cleanup supervisor_pilot  712738 712733
[2025-11-25 20:35:35] 2025-11-26 04:35:35,884 [wrapper] Test setup, not cleaning
[2025-11-25 20:35:35] 2025-11-26 04:35:35,886 [wrapper] apfmon messages muted
[2025-11-25 20:35:35] 2025-11-26 04:35:35,888 [wrapper] ==== wrapper stdout END ====
[2025-11-25 20:35:35] 2025-11-26 04:35:35,890 [wrapper] ==== wrapper stderr END ====
[2025-11-25 20:35:35]  *** Error codes and diagnostics ***
[2025-11-25 20:35:35]     "exeErrorCode": 65,
[2025-11-25 20:35:35]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-25 20:35:35]     "pilotErrorCode": 1305,
[2025-11-25 20:35:35]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-25 20:35:35]  *** Listing of results directory ***
[2025-11-25 20:35:35] total 406804
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc    576529 Nov 25 08:48 pilot3.tar.gz
[2025-11-25 20:35:35] -rwx------. 1 boinc boinc     36292 Nov 25 09:01 runpilot2-wrapper.sh
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc      5112 Nov 25 09:02 queuedata.json
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc       100 Nov 25 20:29 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-25 20:35:35] -rwxr-xr-x. 1 boinc boinc      7986 Nov 25 20:29 run_atlas
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc       105 Nov 25 20:29 job.xml
[2025-11-25 20:35:35] -rw-r--r--. 2 boinc boinc    590108 Nov 25 20:29 input.tar.gz
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc      6595 Nov 25 20:29 init_data.xml
[2025-11-25 20:35:35] -rw-r--r--. 2 boinc boinc 412349293 Nov 25 20:29 EVNT.47483658._002318.pool.root.1
[2025-11-25 20:35:35] -rw-r--r--. 2 boinc boinc     15847 Nov 25 20:29 start_atlas.sh
[2025-11-25 20:35:35] drwxrwx--x. 2 boinc boinc      4096 Nov 25 20:29 shared
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc         0 Nov 25 20:29 boinc_lockfile
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc      2786 Nov 25 20:29 pandaJob.out
[2025-11-25 20:35:35] -rw-------. 1 boinc boinc    991877 Nov 25 20:30 agis_schedconf.cvmfs.json
[2025-11-25 20:35:35] -rw-------. 1 boinc boinc   1516240 Nov 25 20:30 agis_ddmendpoints.agis.ALL.json
[2025-11-25 20:35:35] drwx------. 5 boinc boinc      4096 Nov 25 20:30 pilot3
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc       525 Nov 25 20:32 boinc_task_state.xml
[2025-11-25 20:35:35] -rw-------. 1 boinc boinc       996 Nov 25 20:32 memory_monitor_summary.json
[2025-11-25 20:35:35] -rw-------. 1 boinc boinc     49556 Nov 25 20:32 log.47556161._003020.job.log.tgz.1
[2025-11-25 20:35:35] -rw-------. 1 boinc boinc     10334 Nov 25 20:35 heartbeat.json
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc      8192 Nov 25 20:35 boinc_mmap_file
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc        23 Nov 25 20:35 wrapper_checkpoint.txt
[2025-11-25 20:35:35] -rw-------. 1 boinc boinc       892 Nov 25 20:35 pilotlog.txt
[2025-11-25 20:35:35] -rw-------. 1 boinc boinc        95 Nov 25 20:35 pilot_heartbeat.json
[2025-11-25 20:35:35] -rw-------. 1 boinc boinc    101387 Nov 25 20:35 log.47556161._003020.job.log.1
[2025-11-25 20:35:35] -rw-------. 1 boinc boinc       186 Nov 25 20:35 output.list
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc       620 Nov 25 20:35 runtime_log
[2025-11-25 20:35:35] -rw-------. 1 boinc boinc    174080 Nov 25 20:35 result.tar.gz
[2025-11-25 20:35:35] -rw-------. 1 boinc boinc       645 Nov 25 20:35 X7kLDmXbBi8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUiJKDmdVneDo.diag
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc      8636 Nov 25 20:35 runtime_log.err
[2025-11-25 20:35:35] -rw-r--r--. 1 boinc boinc     22406 Nov 25 20:35 stderr.txt
[2025-11-25 20:35:36] No HITS result produced
[2025-11-25 20:35:36]  *** Contents of shared directory: ***
[2025-11-25 20:35:36] total 403460
[2025-11-25 20:35:36] -rw-r--r--. 2 boinc boinc    590108 Nov 25 20:29 input.tar.gz
[2025-11-25 20:35:36] -rw-r--r--. 2 boinc boinc 412349293 Nov 25 20:29 ATLAS.root_0
[2025-11-25 20:35:36] -rw-r--r--. 2 boinc boinc     15847 Nov 25 20:29 start_atlas.sh
[2025-11-25 20:35:36] -rw-------. 1 boinc boinc    174080 Nov 25 20:35 result.tar.gz
20:35:37 (708611): run_atlas exited; CPU time 44.562314
20:35:37 (708611): called boinc_finish(0)

</stderr_txt>
]]>

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